annotate query.cpp @ 755:37c2b9cce23a multiprobeLSH

Adding mkc_lsh_update branch, trunk candidate with improved LSH: merged trunk 1095 and branch multiprobe_lsh
author mas01mc
date Thu, 25 Nov 2010 13:42:40 +0000
parents e8193805ce42
children
rev   line source
mas01cr@509 1 extern "C" {
mas01cr@509 2 #include "audioDB_API.h"
mas01cr@509 3 }
mas01cr@498 4 #include "audioDB-internals.h"
mas01cr@498 5 #include "accumulators.h"
mas01cr@239 6
mas01cr@498 7 bool audiodb_powers_acceptable(const adb_query_refine_t *r, double p1, double p2) {
mas01cr@498 8 if (r->flags & ADB_REFINE_ABSOLUTE_THRESHOLD) {
mas01cr@498 9 if ((p1 < r->absolute_threshold) || (p2 < r->absolute_threshold)) {
mas01cr@239 10 return false;
mas01cr@239 11 }
mas01cr@239 12 }
mas01cr@498 13 if (r->flags & ADB_REFINE_RELATIVE_THRESHOLD) {
mas01cr@498 14 if (fabs(p1-p2) > fabs(r->relative_threshold)) {
mas01cr@239 15 return false;
mas01cr@239 16 }
mas01cr@239 17 }
mas01cr@239 18 return true;
mas01cr@239 19 }
mas01cr@239 20
mas01cr@498 21 adb_query_results_t *audiodb_query_spec(adb_t *adb, const adb_query_spec_t *qspec) {
mas01cr@498 22 adb_qstate_internal_t qstate = {0};
mas01cr@498 23 qstate.allowed_keys = new std::set<std::string>;
mas01cr@498 24 adb_query_results_t *results;
mas01cr@498 25 if(qspec->refine.flags & ADB_REFINE_INCLUDE_KEYLIST) {
mas01cr@498 26 for(unsigned int k = 0; k < qspec->refine.include.nkeys; k++) {
mas01cr@498 27 qstate.allowed_keys->insert(qspec->refine.include.keys[k]);
mas01cr@498 28 }
mas01cr@498 29 } else {
mas01cr@498 30 for(unsigned int k = 0; k < adb->header->numFiles; k++) {
mas01cr@498 31 qstate.allowed_keys->insert((*adb->keys)[k]);
mas01cr@498 32 }
mas01cr@498 33 }
mas01cr@498 34 if(qspec->refine.flags & ADB_REFINE_EXCLUDE_KEYLIST) {
mas01cr@498 35 for(unsigned int k = 0; k < qspec->refine.exclude.nkeys; k++) {
mas01cr@498 36 qstate.allowed_keys->erase(qspec->refine.exclude.keys[k]);
mas01cr@498 37 }
mas01cr@498 38 }
mas01mc@292 39
mas01cr@498 40 switch(qspec->params.distance) {
mas01cr@498 41 case ADB_DISTANCE_DOT_PRODUCT:
mas01cr@498 42 switch(qspec->params.accumulation) {
mas01cr@498 43 case ADB_ACCUMULATION_DB:
mas01cr@498 44 qstate.accumulator = new DBAccumulator<adb_result_dist_gt>(qspec->params.npoints);
mas01cr@498 45 break;
mas01cr@498 46 case ADB_ACCUMULATION_PER_TRACK:
mas01cr@498 47 qstate.accumulator = new PerTrackAccumulator<adb_result_dist_gt>(qspec->params.npoints, qspec->params.ntracks);
mas01cr@498 48 break;
mas01cr@498 49 case ADB_ACCUMULATION_ONE_TO_ONE:
mas01cr@498 50 qstate.accumulator = new NearestAccumulator<adb_result_dist_gt>();
mas01cr@498 51 break;
mas01cr@498 52 default:
mas01cr@498 53 goto error;
mas01cr@239 54 }
mas01cr@239 55 break;
mas01cr@498 56 case ADB_DISTANCE_EUCLIDEAN_NORMED:
mas01cr@498 57 case ADB_DISTANCE_EUCLIDEAN:
mas01cr@498 58 switch(qspec->params.accumulation) {
mas01cr@498 59 case ADB_ACCUMULATION_DB:
mas01cr@498 60 qstate.accumulator = new DBAccumulator<adb_result_dist_lt>(qspec->params.npoints);
mas01cr@498 61 break;
mas01cr@498 62 case ADB_ACCUMULATION_PER_TRACK:
mas01cr@498 63 qstate.accumulator = new PerTrackAccumulator<adb_result_dist_lt>(qspec->params.npoints, qspec->params.ntracks);
mas01cr@498 64 break;
mas01cr@498 65 case ADB_ACCUMULATION_ONE_TO_ONE:
mas01cr@498 66 qstate.accumulator = new NearestAccumulator<adb_result_dist_lt>();
mas01cr@498 67 break;
mas01cr@498 68 default:
mas01cr@498 69 goto error;
mas01mc@263 70 }
mas01mc@263 71 break;
mas01cr@239 72 default:
mas01cr@498 73 goto error;
mas01mc@329 74 }
mas01cr@498 75
mas01cr@498 76 if((qspec->refine.flags & ADB_REFINE_RADIUS) && audiodb_index_exists(adb->path, qspec->refine.radius, qspec->qid.sequence_length)) {
mas01cr@498 77 if(audiodb_index_query_loop(adb, qspec, &qstate) < 0) {
mas01cr@498 78 goto error;
mas01cr@498 79 }
mas01cr@498 80 } else {
mas01cr@498 81 if(audiodb_query_loop(adb, qspec, &qstate)) {
mas01cr@498 82 goto error;
mas01cr@498 83 }
mas01mc@329 84 }
mas01mc@292 85
mas01cr@498 86 results = qstate.accumulator->get_points();
mas01cr@498 87
mas01cr@498 88 delete qstate.accumulator;
mas01cr@498 89 delete qstate.allowed_keys;
mas01cr@498 90
mas01cr@498 91 return results;
mas01cr@498 92
mas01cr@498 93 error:
mas01cr@498 94 if(qstate.accumulator)
mas01cr@498 95 delete qstate.accumulator;
mas01cr@498 96 if(qstate.allowed_keys)
mas01cr@498 97 delete qstate.allowed_keys;
mas01cr@498 98 return NULL;
mas01cr@239 99 }
mas01cr@239 100
mas01cr@498 101 int audiodb_query_free_results(adb_t *adb, const adb_query_spec_t *spec, adb_query_results_t *rs) {
mas01cr@498 102 free(rs->results);
mas01cr@498 103 free(rs);
mas01cr@498 104 return 0;
mas01cr@239 105 }
mas01cr@239 106
mas01cr@498 107 static void audiodb_initialize_arrays(adb_t *adb, const adb_query_spec_t *spec, int track, unsigned int numVectors, double *query, double *data_buffer, double **D, double **DD) {
mas01cr@239 108 unsigned int j, k, l, w;
mas01cr@239 109 double *dp, *qp, *sp;
mas01cr@239 110
mas01cr@498 111 const unsigned HOP_SIZE = spec->refine.hopsize;
mas01cr@498 112 const unsigned wL = spec->qid.sequence_length;
mas01cr@239 113
mas01cr@239 114 for(j = 0; j < numVectors; j++) {
mas01cr@239 115 // Sum products matrix
mas01cr@498 116 D[j] = new double[(*adb->track_lengths)[track]];
mas01cr@239 117 assert(D[j]);
mas01cr@239 118 // Matched filter matrix
mas01cr@498 119 DD[j]=new double[(*adb->track_lengths)[track]];
mas01cr@239 120 assert(DD[j]);
mas01cr@239 121 }
mas01cr@239 122
mas01cr@239 123 // Dot product
mas01cr@239 124 for(j = 0; j < numVectors; j++)
mas01cr@498 125 for(k = 0; k < (*adb->track_lengths)[track]; k++){
mas01cr@498 126 qp = query + j * adb->header->dim;
mas01cr@498 127 sp = data_buffer + k * adb->header->dim;
mas01cr@239 128 DD[j][k] = 0.0; // Initialize matched filter array
mas01cr@239 129 dp = &D[j][k]; // point to correlation cell j,k
mas01cr@239 130 *dp = 0.0; // initialize correlation cell
mas01cr@498 131 l = adb->header->dim; // size of vectors
mas01cr@239 132 while(l--)
mas01cr@239 133 *dp += *qp++ * *sp++;
mas01cr@239 134 }
mas01cr@239 135
mas01cr@239 136 // Matched Filter
mas01cr@239 137 // HOP SIZE == 1
mas01cr@239 138 double* spd;
mas01cr@239 139 if(HOP_SIZE == 1) { // HOP_SIZE = shingleHop
mas01cr@239 140 for(w = 0; w < wL; w++) {
mas01cr@239 141 for(j = 0; j < numVectors - w; j++) {
mas01cr@239 142 sp = DD[j];
mas01cr@239 143 spd = D[j+w] + w;
mas01cr@498 144 k = (*adb->track_lengths)[track] - w;
mas01mc@292 145 while(k--)
mas01mc@292 146 *sp++ += *spd++;
mas01cr@239 147 }
mas01cr@239 148 }
mas01cr@239 149 } else { // HOP_SIZE != 1
mas01cr@239 150 for(w = 0; w < wL; w++) {
mas01cr@239 151 for(j = 0; j < numVectors - w; j += HOP_SIZE) {
mas01cr@239 152 sp = DD[j];
mas01cr@239 153 spd = D[j+w]+w;
mas01cr@498 154 for(k = 0; k < (*adb->track_lengths)[track] - w; k += HOP_SIZE) {
mas01cr@239 155 *sp += *spd;
mas01cr@239 156 sp += HOP_SIZE;
mas01cr@239 157 spd += HOP_SIZE;
mas01cr@239 158 }
mas01cr@239 159 }
mas01cr@239 160 }
mas01cr@239 161 }
mas01cr@239 162 }
mas01cr@239 163
mas01cr@498 164 static void audiodb_delete_arrays(int track, unsigned int numVectors, double **D, double **DD) {
mas01cr@239 165 if(D != NULL) {
mas01cr@239 166 for(unsigned int j = 0; j < numVectors; j++) {
mas01cr@239 167 delete[] D[j];
mas01cr@239 168 }
mas01cr@239 169 }
mas01cr@239 170 if(DD != NULL) {
mas01cr@239 171 for(unsigned int j = 0; j < numVectors; j++) {
mas01cr@239 172 delete[] DD[j];
mas01cr@239 173 }
mas01cr@239 174 }
mas01cr@239 175 }
mas01cr@239 176
mas01cr@498 177 int audiodb_read_data(adb_t *adb, int trkfid, int track, double **data_buffer_p, size_t *data_buffer_size_p) {
mas01cr@498 178 uint32_t track_length = (*adb->track_lengths)[track];
mas01cr@498 179 size_t track_size = track_length * sizeof(double) * adb->header->dim;
mas01cr@498 180 if (track_size > *data_buffer_size_p) {
mas01cr@239 181 if(*data_buffer_p) {
mas01cr@239 182 free(*data_buffer_p);
mas01cr@239 183 }
mas01cr@239 184 {
mas01cr@498 185 *data_buffer_size_p = track_size;
mas01cr@498 186 void *tmp = malloc(track_size);
mas01cr@239 187 if (tmp == NULL) {
mas01cr@498 188 goto error;
mas01cr@239 189 }
mas01cr@239 190 *data_buffer_p = (double *) tmp;
mas01cr@239 191 }
mas01cr@239 192 }
mas01cr@239 193
mas01cr@498 194 read_or_goto_error(trkfid, *data_buffer_p, track_size);
mas01cr@498 195 return 0;
mas01cr@498 196
mas01cr@498 197 error:
mas01cr@498 198 return 1;
mas01cr@239 199 }
mas01cr@239 200
mas01mc@545 201 int audiodb_track_id_datum(adb_t * adb, uint32_t track_id, adb_datum_t *datum){
mas01mc@545 202 return audiodb_track_id_datum_offset(adb, track_id , datum, 0, 0, 0);
mas01mc@545 203 }
mas01mc@545 204
mas01mc@545 205 int audiodb_track_id_datum_offset(adb_t *adb, uint32_t track_id, adb_datum_t *d, off_t vector_offset, size_t num_vectors, adb_fd_cache_t* cache){
mas01cr@509 206 if(adb->header->flags & ADB_HEADER_FLAG_REFERENCES) {
mas01cr@498 207 /* create a reference/insert, then use adb_insert_create_datum() */
mas01mc@541 208 adb_reference_t *reference = NULL;
mas01mc@541 209 if(! (cache && cache->reference) ){
mas01mc@541 210 reference = (adb_reference_t *) malloc(sizeof(adb_reference_t));
mas01mc@541 211 reference->features = (char*) malloc(ADB_MAXSTR*sizeof(char));
mas01mc@546 212 if(adb->header->flags & ADB_HEADER_FLAG_POWER) {
mas01mc@541 213 reference->power = (char*) malloc(ADB_MAXSTR*sizeof(char));
mas01mc@546 214 }
mas01mc@546 215 else{
mas01mc@543 216 reference->power = NULL;
mas01mc@546 217 }
mas01mc@546 218 if(adb->header->flags & ADB_HEADER_FLAG_TIMES){
mas01mc@541 219 reference->times = (char*)malloc(ADB_MAXSTR*sizeof(char));
mas01mc@546 220 }
mas01mc@546 221 else{
mas01mc@543 222 reference->times = NULL;
mas01mc@546 223 }
mas01mc@546 224 if(cache){
mas01mc@541 225 cache->reference = reference;
mas01mc@546 226 }
mas01cr@498 227 }
mas01mc@546 228 else{
mas01mc@541 229 reference = cache->reference;
mas01mc@546 230 }
mas01mc@541 231 if(! (cache && cache->track_id==track_id) ){
mas01mc@546 232 if(cache){
mas01mc@541 233 cache->track_id = track_id;
mas01mc@546 234 }
mas01mc@541 235 lseek(adb->fd, adb->header->dataOffset + track_id * ADB_FILETABLE_ENTRY_SIZE, SEEK_SET);
mas01mc@541 236 read_or_goto_error(adb->fd, (void *)reference->features, ADB_MAXSTR);
mas01mc@541 237 if(adb->header->flags & ADB_HEADER_FLAG_POWER) {
mas01mc@541 238 lseek(adb->fd, adb->header->powerTableOffset + track_id * ADB_FILETABLE_ENTRY_SIZE, SEEK_SET);
mas01mc@541 239 read_or_goto_error(adb->fd, (void *)reference->power, ADB_MAXSTR);
mas01mc@541 240 }
mas01mc@541 241 if(adb->header->flags & ADB_HEADER_FLAG_TIMES) {
mas01mc@541 242 lseek(adb->fd, adb->header->timesTableOffset + track_id * ADB_FILETABLE_ENTRY_SIZE, SEEK_SET);
mas01mc@541 243 read_or_goto_error(adb->fd, (void *)reference->times, ADB_MAXSTR);
mas01mc@541 244 }
mas01cr@498 245 }
mas01mc@546 246 int retval = audiodb_insert_create_datum_offset(reference, d, vector_offset, num_vectors, cache);
mas01mc@541 247 if(!cache){
mas01mc@541 248 audiodb_free_datum_reference(reference);
mas01mc@541 249 free(reference);
mas01mc@541 250 }
mas01mc@541 251 return retval;
mas01mc@546 252 }
mas01mc@546 253 else {
mas01mc@546 254 off_t track_offset = (*adb->track_offsets)[track_id];
mas01cr@498 255 /* initialize from sources of data that we already have */
mas01mc@539 256 if(num_vectors)
mas01mc@539 257 d->nvectors = num_vectors;
mas01mc@539 258 else
mas01mc@539 259 d->nvectors = (*adb->track_lengths)[track_id];
mas01cr@498 260 d->dim = adb->header->dim;
mas01cr@498 261 d->key = (*adb->keys)[track_id].c_str();
mas01cr@498 262 /* read out stuff from the database tables */
mas01cr@498 263 d->data = (double *) malloc(d->nvectors * d->dim * sizeof(double));
mas01mc@539 264 lseek(adb->fd, adb->header->dataOffset + track_offset + vector_offset*d->dim*sizeof(double), SEEK_SET);
mas01cr@498 265 read_or_goto_error(adb->fd, d->data, d->nvectors * d->dim * sizeof(double));
mas01cr@509 266 if(adb->header->flags & ADB_HEADER_FLAG_POWER) {
mas01cr@498 267 d->power = (double *) malloc(d->nvectors * sizeof(double));
mas01mc@539 268 lseek(adb->fd, adb->header->powerTableOffset + track_offset / d->dim + vector_offset*sizeof(double), SEEK_SET);
mas01cr@498 269 read_or_goto_error(adb->fd, d->power, d->nvectors * sizeof(double));
mas01cr@498 270 }
mas01cr@509 271 if(adb->header->flags & ADB_HEADER_FLAG_TIMES) {
mas01cr@498 272 d->times = (double *) malloc(2 * d->nvectors * sizeof(double));
mas01mc@539 273 lseek(adb->fd, adb->header->timesTableOffset + track_offset / d->dim + 2 * vector_offset*sizeof(double), SEEK_SET);
mas01cr@498 274 read_or_goto_error(adb->fd, d->times, 2 * d->nvectors * sizeof(double));
mas01cr@498 275 }
mas01cr@498 276 return 0;
mas01cr@498 277 }
mas01cr@498 278 error:
mas01cr@498 279 audiodb_free_datum(d);
mas01cr@498 280 return 1;
mas01cr@498 281 }
mas01mc@292 282
mas01cr@498 283 int audiodb_datum_qpointers(adb_datum_t *d, uint32_t sequence_length, double **vector_data, double **vector, adb_qpointers_internal_t *qpointers) {
mas01cr@498 284 uint32_t nvectors = d->nvectors;
mas01cr@498 285
mas01cr@498 286 qpointers->nvectors = nvectors;
mas01cr@498 287
mas01cr@498 288 size_t vector_size = nvectors * sizeof(double) * d->dim;
mas01cr@498 289 *vector_data = new double[vector_size];
mas01cr@498 290 memcpy(*vector_data, d->data, vector_size);
mas01cr@498 291
mas01cr@498 292 qpointers->l2norm_data = new double[vector_size / d->dim];
mas01cr@498 293 audiodb_l2norm_buffer(*vector_data, d->dim, nvectors, qpointers->l2norm_data);
mas01cr@498 294 audiodb_sequence_sum(qpointers->l2norm_data, nvectors, sequence_length);
mas01cr@498 295 audiodb_sequence_sqrt(qpointers->l2norm_data, nvectors, sequence_length);
mas01cr@498 296
mas01cr@498 297 if(d->power) {
mas01cr@498 298 qpointers->power_data = new double[vector_size / d->dim];
mas01cr@498 299 memcpy(qpointers->power_data, d->power, vector_size / d->dim);
mas01cr@498 300 audiodb_sequence_sum(qpointers->power_data, nvectors, sequence_length);
mas01cr@498 301 audiodb_sequence_average(qpointers->power_data, nvectors, sequence_length);
mas01cr@239 302 }
mas01cr@239 303
mas01cr@498 304 if(d->times) {
mas01cr@498 305 qpointers->mean_duration = new double[1];
mas01cr@498 306 *qpointers->mean_duration = 0;
mas01cr@498 307 for(unsigned int k = 0; k < nvectors; k++) {
mas01cr@498 308 *qpointers->mean_duration += d->times[2*k+1] - d->times[2*k];
mas01cr@239 309 }
mas01cr@498 310 *qpointers->mean_duration /= nvectors;
mas01cr@239 311 }
mas01cr@239 312
mas01cr@498 313 *vector = *vector_data;
mas01cr@498 314 qpointers->l2norm = qpointers->l2norm_data;
mas01cr@498 315 qpointers->power = qpointers->power_data;
mas01cr@498 316 return 0;
mas01cr@498 317 }
mas01cr@498 318
mas01mc@528 319 int audiodb_datum_qpointers_partial(adb_datum_t *d, uint32_t sequence_length, double **vector_data,
mas01mc@528 320 double **vector, adb_qpointers_internal_t *qpointers,
mas01mc@528 321 adb_qstate_internal_t *qstate){
mas01mc@528 322 uint32_t nvectors = d->nvectors;
mas01mc@528 323 qpointers->nvectors = nvectors;
mas01mc@528 324
mas01mc@539 325 PointPair pp = (*qstate->exact_evaluation_queue).top();
mas01mc@529 326 #ifdef _LSH_DEBUG_
mas01mc@539 327 cout << "tid=" << pp.trackID << " qpos=" << pp.qpos << " spos=" << pp.spos << endl;
mas01mc@539 328 cout.flush();
mas01mc@529 329 #endif
mas01mc@539 330
mas01mc@539 331 if(d->power) {
mas01mc@539 332 //memcpy(qpointers->power_data, d->power, seq_len_dbl);
mas01mc@539 333 audiodb_sequence_sum(d->power, sequence_length, sequence_length);
mas01mc@539 334 audiodb_sequence_average(d->power, sequence_length, sequence_length);
mas01mc@528 335 }
mas01mc@539 336
mas01mc@528 337 if(d->times) {
mas01mc@528 338 qpointers->mean_duration = new double[1];
mas01mc@528 339 *qpointers->mean_duration = 0;
mas01mc@528 340 for(unsigned int k = 0; k < nvectors; k++) {
mas01mc@528 341 *qpointers->mean_duration += d->times[2*k+1] - d->times[2*k];
mas01mc@528 342 }
mas01mc@528 343 *qpointers->mean_duration /= nvectors;
mas01mc@528 344 }
mas01mc@539 345
mas01mc@531 346 *vector = d->data;
mas01mc@531 347 *vector_data = d->data;
mas01mc@531 348 qpointers->l2norm = 0 ;
mas01mc@539 349 qpointers->power = d->power;
mas01mc@528 350 return 0;
mas01mc@528 351 }
mas01mc@528 352
mas01cr@498 353 int audiodb_query_spec_qpointers(adb_t *adb, const adb_query_spec_t *spec, double **vector_data, double **vector, adb_qpointers_internal_t *qpointers) {
mas01cr@498 354 adb_datum_t *datum;
mas01cr@498 355 adb_datum_t d = {0};
mas01cr@498 356 uint32_t sequence_length;
mas01cr@498 357 uint32_t sequence_start;
mas01cr@498 358
mas01cr@498 359 datum = spec->qid.datum;
mas01cr@498 360 sequence_length = spec->qid.sequence_length;
mas01cr@498 361 sequence_start = spec->qid.sequence_start;
mas01cr@498 362
mas01cr@498 363 if(datum->data) {
mas01cr@498 364 if(datum->dim != adb->header->dim) {
mas01cr@498 365 return 1;
mas01cr@239 366 }
mas01cr@498 367 /* initialize d, and mark that nothing needs freeing later. */
mas01cr@498 368 d = *datum;
mas01cr@498 369 datum = &d;
mas01cr@498 370 } else if (datum->key) {
mas01cr@498 371 uint32_t track_id;
mas01cr@498 372 if((track_id = audiodb_key_index(adb, datum->key)) == (uint32_t) -1) {
mas01cr@498 373 return 1;
mas01cr@498 374 }
mas01cr@498 375 audiodb_track_id_datum(adb, track_id, &d);
mas01cr@498 376 } else {
mas01cr@498 377 return 1;
mas01cr@239 378 }
mas01cr@239 379
mas01cr@498 380 /* FIXME: check the overflow logic here */
mas01cr@498 381 if(sequence_start + sequence_length > d.nvectors) {
mas01cr@498 382 if(datum != &d) {
mas01cr@498 383 audiodb_free_datum(&d);
mas01cr@498 384 }
mas01cr@498 385 return 1;
mas01cr@498 386 }
mas01cr@239 387
mas01cr@498 388 audiodb_datum_qpointers(&d, sequence_length, vector_data, vector, qpointers);
mas01cr@498 389
mas01cr@498 390 /* Finally, if applicable, set up the moving qpointers. */
mas01cr@498 391 if(spec->qid.flags & ADB_QID_FLAG_EXHAUSTIVE) {
mas01cr@498 392 /* the qpointers are already at the start, and so correct. */
mas01cr@498 393 } else {
mas01cr@498 394 /* adjust the qpointers to point to the correct place in the sequence */
mas01cr@498 395 *vector = *vector_data + spec->qid.sequence_start * d.dim;
mas01cr@498 396 qpointers->l2norm = qpointers->l2norm_data + spec->qid.sequence_start;
mas01cr@498 397 if(d.power) {
mas01cr@498 398 qpointers->power = qpointers->power_data + spec->qid.sequence_start;
mas01cr@239 399 }
mas01cr@498 400 qpointers->nvectors = sequence_length;
mas01cr@239 401 }
mas01cr@498 402
mas01cr@498 403 /* Clean up: free any bits of datum that we have ourselves
mas01cr@498 404 * allocated. */
mas01cr@498 405 if(datum != &d) {
mas01cr@498 406 audiodb_free_datum(&d);
mas01cr@498 407 }
mas01cr@498 408
mas01cr@498 409 return 0;
mas01cr@239 410 }
mas01cr@239 411
mas01cr@498 412 static int audiodb_set_up_dbpointers(adb_t *adb, const adb_query_spec_t *spec, adb_qpointers_internal_t *dbpointers) {
mas01cr@498 413 uint32_t nvectors = adb->header->length / (adb->header->dim * sizeof(double));
mas01cr@498 414 uint32_t sequence_length = spec->qid.sequence_length;
mas01mc@292 415
mas01cr@498 416 bool using_power = spec->refine.flags & (ADB_REFINE_ABSOLUTE_THRESHOLD|ADB_REFINE_RELATIVE_THRESHOLD);
mas01cr@498 417 bool using_times = spec->refine.flags & ADB_REFINE_DURATION_RATIO;
mas01cr@498 418 double *times_table = NULL;
mas01cr@498 419
mas01cr@498 420
mas01cr@498 421 dbpointers->nvectors = nvectors;
mas01cr@498 422 dbpointers->l2norm_data = new double[nvectors];
mas01cr@498 423
mas01cr@498 424 double *snpp = dbpointers->l2norm_data, *sppp = 0;
mas01cr@498 425 lseek(adb->fd, adb->header->l2normTableOffset, SEEK_SET);
mas01cr@498 426 read_or_goto_error(adb->fd, dbpointers->l2norm_data, nvectors * sizeof(double));
mas01cr@498 427
mas01cr@498 428 if (using_power) {
mas01cr@509 429 if (!(adb->header->flags & ADB_HEADER_FLAG_POWER)) {
mas01cr@498 430 goto error;
mas01cr@498 431 }
mas01cr@498 432 dbpointers->power_data = new double[nvectors];
mas01cr@498 433 sppp = dbpointers->power_data;
mas01cr@498 434 lseek(adb->fd, adb->header->powerTableOffset, SEEK_SET);
mas01cr@498 435 read_or_goto_error(adb->fd, dbpointers->power_data, nvectors * sizeof(double));
mas01mc@292 436 }
mas01mc@292 437
mas01cr@498 438 for(unsigned int i = 0; i < adb->header->numFiles; i++){
mas01cr@498 439 size_t track_length = (*adb->track_lengths)[i];
mas01cr@498 440 if(track_length >= sequence_length) {
mas01cr@498 441 audiodb_sequence_sum(snpp, track_length, sequence_length);
mas01cr@498 442 audiodb_sequence_sqrt(snpp, track_length, sequence_length);
mas01cr@498 443 if (using_power) {
mas01cr@498 444 audiodb_sequence_sum(sppp, track_length, sequence_length);
mas01cr@498 445 audiodb_sequence_average(sppp, track_length, sequence_length);
mas01cr@498 446 }
mas01mc@324 447 }
mas01cr@498 448 snpp += track_length;
mas01cr@498 449 if (using_power) {
mas01cr@498 450 sppp += track_length;
mas01mc@324 451 }
mas01mc@292 452 }
mas01mc@292 453
mas01cr@498 454 if (using_times) {
mas01cr@509 455 if(!(adb->header->flags & ADB_HEADER_FLAG_TIMES)) {
mas01cr@498 456 goto error;
mas01cr@498 457 }
mas01mc@292 458
mas01cr@498 459 dbpointers->mean_duration = new double[adb->header->numFiles];
mas01cr@498 460
mas01cr@498 461 times_table = (double *) malloc(2 * nvectors * sizeof(double));
mas01cr@498 462 if(!times_table) {
mas01cr@498 463 goto error;
mas01cr@498 464 }
mas01cr@498 465 lseek(adb->fd, adb->header->timesTableOffset, SEEK_SET);
mas01cr@498 466 read_or_goto_error(adb->fd, times_table, 2 * nvectors * sizeof(double));
mas01cr@498 467 for(unsigned int k = 0; k < adb->header->numFiles; k++) {
mas01cr@498 468 size_t track_length = (*adb->track_lengths)[k];
mas01cr@498 469 unsigned int j;
mas01cr@498 470 dbpointers->mean_duration[k] = 0.0;
mas01cr@498 471 for(j = 0; j < track_length; j++) {
mas01cr@498 472 dbpointers->mean_duration[k] += times_table[2*j+1] - times_table[2*j];
mas01mc@292 473 }
mas01cr@498 474 dbpointers->mean_duration[k] /= j;
mas01mc@292 475 }
mas01cr@498 476
mas01cr@498 477 free(times_table);
mas01cr@498 478 times_table = NULL;
mas01mc@292 479 }
mas01cr@498 480
mas01cr@498 481 dbpointers->l2norm = dbpointers->l2norm_data;
mas01cr@498 482 dbpointers->power = dbpointers->power_data;
mas01cr@498 483 return 0;
mas01cr@498 484
mas01cr@498 485 error:
mas01cr@498 486 if(dbpointers->l2norm_data) {
mas01cr@498 487 delete [] dbpointers->l2norm_data;
mas01cr@498 488 }
mas01cr@498 489 if(dbpointers->power_data) {
mas01cr@498 490 delete [] dbpointers->power_data;
mas01cr@498 491 }
mas01cr@498 492 if(dbpointers->mean_duration) {
mas01cr@498 493 delete [] dbpointers->mean_duration;
mas01cr@498 494 }
mas01cr@498 495 if(times_table) {
mas01cr@498 496 free(times_table);
mas01cr@498 497 }
mas01cr@498 498 return 1;
mas01cr@498 499
mas01mc@292 500 }
mas01mc@292 501
mas01cr@498 502 int audiodb_query_queue_loop(adb_t *adb, const adb_query_spec_t *spec, adb_qstate_internal_t *qstate, double *query, adb_qpointers_internal_t *qpointers) {
mas01cr@498 503 adb_qpointers_internal_t dbpointers = {0};
mas01mc@292 504
mas01cr@498 505 uint32_t sequence_length = spec->qid.sequence_length;
mas01cr@498 506 bool power_refine = spec->refine.flags & (ADB_REFINE_ABSOLUTE_THRESHOLD|ADB_REFINE_RELATIVE_THRESHOLD);
mas01cr@239 507
mas01cr@498 508 if(qstate->exact_evaluation_queue->size() == 0) {
mas01cr@498 509 return 0;
mas01cr@239 510 }
mas01cr@239 511
mas01cr@498 512 /* We are guaranteed that the order of points is sorted by:
mas01cr@498 513 * {trackID, spos, qpos} so we can be relatively efficient in
mas01cr@498 514 * initialization of track data. We assume that points usually
mas01cr@498 515 * don't overlap, so we will use exhaustive dot product evaluation
mas01cr@498 516 * (instead of memoization of partial sums, as in query_loop()).
mas01cr@498 517 */
mas01cr@498 518 double dist;
mas01cr@498 519 double *dbdata = 0, *dbdata_pointer;
mas01cr@498 520 Uns32T npairs = qstate->exact_evaluation_queue->size();
mas01mc@541 521 Uns32T currentTrack = qstate->exact_evaluation_queue->top().trackID+1; // i.e. not first track
mas01mc@527 522 #ifdef _LSH_DEBUG_
mas01mc@527 523 cout << "Num vector pairs to evaluate: " << npairs << "..." << endl;
mas01mc@527 524 cout.flush();
mas01mc@527 525 #endif
mas01mc@531 526 adb_datum_t d = {0};
mas01mc@541 527 adb_fd_cache_t c = {0};
mas01mc@541 528 c.track_id = currentTrack;
mas01cr@498 529 while(npairs--) {
mas01cr@498 530 PointPair pp = qstate->exact_evaluation_queue->top();
mas01mc@541 531 if(pp.trackID != currentTrack){
mas01mc@541 532 audiodb_free_datum(&d);
mas01mc@541 533 currentTrack = pp.trackID;
mas01mc@541 534 }
mas01mc@539 535 maybe_delete_array(dbpointers.mean_duration);
mas01mc@545 536 if(audiodb_track_id_datum_offset(adb, pp.trackID, &d, pp.spos, sequence_length, &c)) {
mas01mc@539 537 delete qstate->exact_evaluation_queue;
mas01mc@539 538 delete qstate->set;
mas01mc@541 539 audiodb_free_datum(&d);
mas01mc@541 540 audiodb_free_datum_cache(&c);
mas01mc@539 541 return 1;
mas01mc@539 542 }
mas01mc@539 543
mas01mc@539 544 if(audiodb_datum_qpointers_partial(&d, sequence_length, &dbdata, &dbdata_pointer, &dbpointers, qstate)) {
mas01mc@539 545 delete qstate->exact_evaluation_queue;
mas01mc@539 546 delete qstate->set;
mas01mc@531 547 audiodb_free_datum(&d);
mas01mc@541 548 audiodb_free_datum_cache(&c);
mas01mc@539 549 return 1;
mas01mc@539 550 }
mas01mc@531 551
mas01cr@498 552 Uns32T qPos = (spec->qid.flags & ADB_QID_FLAG_EXHAUSTIVE) ? pp.qpos : 0;
mas01cr@498 553 // Test power thresholds before computing distance
mas01mc@539 554 if( ( (!power_refine) || audiodb_powers_acceptable(&spec->refine, qpointers->power[qPos], dbpointers.power[0])) &&
mas01mc@539 555 ( qPos<qpointers->nvectors-sequence_length+1 && pp.spos<(*adb->track_lengths)[pp.trackID]-sequence_length+1 ) ){
mas01mc@531 556 // Compute distance
mas01mc@539 557 dist = audiodb_dot_product(query + qPos*adb->header->dim, dbdata, adb->header->dim*sequence_length);
mas01mc@531 558 double qn = audiodb_dot_product(query + qPos*adb->header->dim, query + qPos*adb->header->dim, adb->header->dim*sequence_length);
mas01mc@539 559 double sn = audiodb_dot_product(dbdata, dbdata, adb->header->dim*sequence_length);
mas01mc@531 560 qn = sqrt(qn);
mas01mc@531 561 sn = sqrt(sn);
mas01cr@498 562 switch(spec->params.distance) {
mas01cr@498 563 case ADB_DISTANCE_EUCLIDEAN_NORMED:
mas01cr@498 564 dist = 2 - (2/(qn*sn))*dist;
mas01cr@498 565 break;
mas01cr@498 566 case ADB_DISTANCE_EUCLIDEAN:
mas01cr@498 567 dist = qn*qn + sn*sn - 2*dist;
mas01cr@498 568 break;
mas01cr@498 569 }
mas01cr@498 570 if((!(spec->refine.flags & ADB_REFINE_RADIUS)) ||
mas01cr@509 571 dist <= (spec->refine.radius + ADB_DISTANCE_TOLERANCE)) {
mas01cr@498 572 adb_result_t r;
mas01cr@498 573 r.key = (*adb->keys)[pp.trackID].c_str();
mas01cr@498 574 r.dist = dist;
mas01cr@498 575 r.qpos = pp.qpos;
mas01cr@498 576 r.ipos = pp.spos;
mas01cr@498 577 qstate->accumulator->add_point(&r);
mas01cr@239 578 }
mas01cr@239 579 }
mas01cr@498 580 qstate->exact_evaluation_queue->pop();
mas01mc@292 581 }
mas01mc@474 582
mas01mc@315 583 // Cleanup
mas01mc@541 584 audiodb_free_datum(&d);
mas01mc@541 585 audiodb_free_datum_cache(&c);
mas01cr@509 586 maybe_delete_array(dbpointers.mean_duration);
mas01cr@498 587 delete qstate->exact_evaluation_queue;
mas01mc@529 588 delete qstate->set;
mas01cr@498 589 return 0;
mas01mc@292 590 }
mas01mc@292 591
mas01cr@498 592 int audiodb_query_loop(adb_t *adb, const adb_query_spec_t *spec, adb_qstate_internal_t *qstate) {
mas01cr@498 593
mas01cr@498 594 double *query, *query_data;
mas01cr@498 595 adb_qpointers_internal_t qpointers = {0}, dbpointers = {0};
mas01mc@292 596
mas01cr@498 597 bool power_refine = spec->refine.flags & (ADB_REFINE_ABSOLUTE_THRESHOLD|ADB_REFINE_RELATIVE_THRESHOLD);
mas01cr@239 598
mas01cr@509 599 if(adb->header->flags & ADB_HEADER_FLAG_REFERENCES) {
mas01cr@498 600 /* FIXME: actually it would be nice to support this mode of
mas01cr@498 601 * operation, but for now... */
mas01cr@498 602 return 1;
mas01cr@498 603 }
mas01mc@324 604
mas01cr@498 605 if(audiodb_query_spec_qpointers(adb, spec, &query_data, &query, &qpointers)) {
mas01cr@498 606 return 1;
mas01cr@498 607 }
mas01cr@239 608
mas01cr@498 609 if(audiodb_set_up_dbpointers(adb, spec, &dbpointers)) {
mas01cr@498 610 return 1;
mas01cr@498 611 }
mas01cr@239 612
mas01cr@498 613 unsigned j,k,track,trackOffset=0, HOP_SIZE = spec->refine.hopsize;
mas01cr@498 614 unsigned wL = spec->qid.sequence_length;
mas01cr@239 615 double **D = 0; // Differences query and target
mas01cr@239 616 double **DD = 0; // Matched filter distance
mas01cr@239 617
mas01cr@498 618 D = new double*[qpointers.nvectors]; // pre-allocate
mas01cr@498 619 DD = new double*[qpointers.nvectors];
mas01cr@239 620
mas01cr@239 621 off_t trackIndexOffset;
mas01cr@239 622
mas01cr@239 623 // Track loop
mas01cr@239 624 size_t data_buffer_size = 0;
mas01cr@239 625 double *data_buffer = 0;
mas01cr@498 626 lseek(adb->fd, adb->header->dataOffset, SEEK_SET);
mas01cr@239 627
mas01cr@498 628 std::set<std::string>::iterator keys_end = qstate->allowed_keys->end();
mas01cr@498 629 for(track = 0; track < adb->header->numFiles; track++) {
mas01cr@498 630 unsigned t = track;
mas01cr@498 631
mas01cr@498 632 while (qstate->allowed_keys->find((*adb->keys)[track]) == keys_end) {
mas01cr@498 633 track++;
mas01cr@498 634 if(track == adb->header->numFiles) {
mas01cr@498 635 goto loop_finish;
mas01cr@239 636 }
mas01cr@239 637 }
mas01cr@498 638 trackOffset = (*adb->track_offsets)[track];
mas01cr@498 639 if(track != t) {
mas01cr@498 640 lseek(adb->fd, adb->header->dataOffset + trackOffset, SEEK_SET);
mas01cr@498 641 }
mas01cr@498 642 trackIndexOffset = trackOffset / (adb->header->dim * sizeof(double)); // dbpointers.nvectors offset
mas01cr@239 643
mas01cr@498 644 if(audiodb_read_data(adb, adb->fd, track, &data_buffer, &data_buffer_size)) {
mas01cr@498 645 return 1;
mas01mc@292 646 }
mas01cr@498 647 if(wL <= (*adb->track_lengths)[track]) { // test for short sequences
mas01cr@498 648
mas01cr@498 649 audiodb_initialize_arrays(adb, spec, track, qpointers.nvectors, query, data_buffer, D, DD);
mas01mc@292 650
mas01cr@498 651 if((!(spec->refine.flags & ADB_REFINE_DURATION_RATIO)) ||
mas01cr@498 652 fabs(dbpointers.mean_duration[track]-qpointers.mean_duration[0]) < qpointers.mean_duration[0]*spec->refine.duration_ratio) {
mas01cr@239 653
mas01cr@239 654 // Search for minimum distance by shingles (concatenated vectors)
mas01cr@498 655 for(j = 0; j <= qpointers.nvectors - wL; j += HOP_SIZE) {
mas01cr@498 656 for(k = 0; k <= (*adb->track_lengths)[track] - wL; k += HOP_SIZE) {
mas01cr@498 657 double thisDist = 0;
mas01cr@498 658 double qn = qpointers.l2norm[j];
mas01cr@498 659 double sn = dbpointers.l2norm[trackIndexOffset + k];
mas01cr@498 660 switch(spec->params.distance) {
mas01cr@498 661 case ADB_DISTANCE_EUCLIDEAN_NORMED:
mas01cr@498 662 thisDist = 2-(2/(qn*sn))*DD[j][k];
mas01cr@498 663 break;
mas01cr@498 664 case ADB_DISTANCE_EUCLIDEAN:
mas01cr@498 665 thisDist = qn*qn + sn*sn - 2*DD[j][k];
mas01cr@498 666 break;
mas01cr@498 667 case ADB_DISTANCE_DOT_PRODUCT:
mas01cr@498 668 thisDist = DD[j][k];
mas01cr@498 669 break;
mas01cr@498 670 }
mas01cr@239 671 // Power test
mas01cr@498 672 if ((!power_refine) || audiodb_powers_acceptable(&spec->refine, qpointers.power[j], dbpointers.power[trackIndexOffset + k])) {
mas01cr@239 673 // radius test
mas01cr@498 674 if((!(spec->refine.flags & ADB_REFINE_RADIUS)) ||
mas01cr@509 675 thisDist <= (spec->refine.radius + ADB_DISTANCE_TOLERANCE)) {
mas01cr@498 676 adb_result_t r;
mas01cr@498 677 r.key = (*adb->keys)[track].c_str();
mas01cr@498 678 r.dist = thisDist;
mas01cr@498 679 if(spec->qid.flags & ADB_QID_FLAG_EXHAUSTIVE) {
mas01cr@498 680 r.qpos = j;
mas01cr@498 681 } else {
mas01cr@498 682 r.qpos = spec->qid.sequence_start;
mas01cr@498 683 }
mas01cr@498 684 r.ipos = k;
mas01cr@498 685 qstate->accumulator->add_point(&r);
mas01cr@239 686 }
mas01cr@239 687 }
mas01cr@239 688 }
mas01cr@239 689 }
mas01cr@239 690 } // Duration match
mas01cr@498 691 audiodb_delete_arrays(track, qpointers.nvectors, D, DD);
mas01cr@239 692 }
mas01cr@239 693 }
mas01cr@239 694
mas01cr@498 695 loop_finish:
mas01cr@498 696
mas01cr@239 697 free(data_buffer);
mas01cr@239 698
mas01cr@239 699 // Clean up
mas01cr@239 700 if(query_data)
mas01cr@239 701 delete[] query_data;
mas01cr@498 702 if(qpointers.l2norm_data)
mas01cr@498 703 delete[] qpointers.l2norm_data;
mas01cr@498 704 if(qpointers.power_data)
mas01cr@498 705 delete[] qpointers.power_data;
mas01cr@498 706 if(qpointers.mean_duration)
mas01cr@498 707 delete[] qpointers.mean_duration;
mas01cr@498 708 if(dbpointers.power_data)
mas01cr@498 709 delete[] dbpointers.power_data;
mas01cr@498 710 if(dbpointers.l2norm_data)
mas01cr@498 711 delete[] dbpointers.l2norm_data;
mas01cr@239 712 if(D)
mas01cr@239 713 delete[] D;
mas01cr@239 714 if(DD)
mas01cr@239 715 delete[] DD;
mas01cr@498 716 if(dbpointers.mean_duration)
mas01cr@498 717 delete[] dbpointers.mean_duration;
mas01cr@498 718
mas01cr@498 719 return 0;
mas01cr@239 720 }