annotate query.cpp @ 541:52d82badc544 multiprobeLSH

Added file caching for sparse datum reads. This required making a new type called adb_fd_cache_t and modifying the read methods audiodb_track_id_datum() and audiodb_insert_create_datum() to use the cache struct if one is provided by the user.
author mas01mc
date Sat, 07 Feb 2009 16:59:31 +0000
parents 06ed85832c3b
children 6afeb2c76957
rev   line source
mas01cr@509 1 extern "C" {
mas01cr@509 2 #include "audioDB_API.h"
mas01cr@509 3 }
mas01cr@498 4 #include "audioDB-internals.h"
mas01cr@498 5 #include "accumulators.h"
mas01cr@239 6
mas01cr@498 7 bool audiodb_powers_acceptable(const adb_query_refine_t *r, double p1, double p2) {
mas01cr@498 8 if (r->flags & ADB_REFINE_ABSOLUTE_THRESHOLD) {
mas01cr@498 9 if ((p1 < r->absolute_threshold) || (p2 < r->absolute_threshold)) {
mas01cr@239 10 return false;
mas01cr@239 11 }
mas01cr@239 12 }
mas01cr@498 13 if (r->flags & ADB_REFINE_RELATIVE_THRESHOLD) {
mas01cr@498 14 if (fabs(p1-p2) > fabs(r->relative_threshold)) {
mas01cr@239 15 return false;
mas01cr@239 16 }
mas01cr@239 17 }
mas01cr@239 18 return true;
mas01cr@239 19 }
mas01cr@239 20
mas01cr@498 21 adb_query_results_t *audiodb_query_spec(adb_t *adb, const adb_query_spec_t *qspec) {
mas01cr@498 22 adb_qstate_internal_t qstate = {0};
mas01cr@498 23 qstate.allowed_keys = new std::set<std::string>;
mas01cr@498 24 adb_query_results_t *results;
mas01cr@498 25 if(qspec->refine.flags & ADB_REFINE_INCLUDE_KEYLIST) {
mas01cr@498 26 for(unsigned int k = 0; k < qspec->refine.include.nkeys; k++) {
mas01cr@498 27 qstate.allowed_keys->insert(qspec->refine.include.keys[k]);
mas01cr@498 28 }
mas01cr@498 29 } else {
mas01cr@498 30 for(unsigned int k = 0; k < adb->header->numFiles; k++) {
mas01cr@498 31 qstate.allowed_keys->insert((*adb->keys)[k]);
mas01cr@498 32 }
mas01cr@498 33 }
mas01cr@498 34 if(qspec->refine.flags & ADB_REFINE_EXCLUDE_KEYLIST) {
mas01cr@498 35 for(unsigned int k = 0; k < qspec->refine.exclude.nkeys; k++) {
mas01cr@498 36 qstate.allowed_keys->erase(qspec->refine.exclude.keys[k]);
mas01cr@498 37 }
mas01cr@498 38 }
mas01mc@292 39
mas01cr@498 40 switch(qspec->params.distance) {
mas01cr@498 41 case ADB_DISTANCE_DOT_PRODUCT:
mas01cr@498 42 switch(qspec->params.accumulation) {
mas01cr@498 43 case ADB_ACCUMULATION_DB:
mas01cr@498 44 qstate.accumulator = new DBAccumulator<adb_result_dist_gt>(qspec->params.npoints);
mas01cr@498 45 break;
mas01cr@498 46 case ADB_ACCUMULATION_PER_TRACK:
mas01cr@498 47 qstate.accumulator = new PerTrackAccumulator<adb_result_dist_gt>(qspec->params.npoints, qspec->params.ntracks);
mas01cr@498 48 break;
mas01cr@498 49 case ADB_ACCUMULATION_ONE_TO_ONE:
mas01cr@498 50 qstate.accumulator = new NearestAccumulator<adb_result_dist_gt>();
mas01cr@498 51 break;
mas01cr@498 52 default:
mas01cr@498 53 goto error;
mas01cr@239 54 }
mas01cr@239 55 break;
mas01cr@498 56 case ADB_DISTANCE_EUCLIDEAN_NORMED:
mas01cr@498 57 case ADB_DISTANCE_EUCLIDEAN:
mas01cr@498 58 switch(qspec->params.accumulation) {
mas01cr@498 59 case ADB_ACCUMULATION_DB:
mas01cr@498 60 qstate.accumulator = new DBAccumulator<adb_result_dist_lt>(qspec->params.npoints);
mas01cr@498 61 break;
mas01cr@498 62 case ADB_ACCUMULATION_PER_TRACK:
mas01cr@498 63 qstate.accumulator = new PerTrackAccumulator<adb_result_dist_lt>(qspec->params.npoints, qspec->params.ntracks);
mas01cr@498 64 break;
mas01cr@498 65 case ADB_ACCUMULATION_ONE_TO_ONE:
mas01cr@498 66 qstate.accumulator = new NearestAccumulator<adb_result_dist_lt>();
mas01cr@498 67 break;
mas01cr@498 68 default:
mas01cr@498 69 goto error;
mas01mc@263 70 }
mas01mc@263 71 break;
mas01cr@239 72 default:
mas01cr@498 73 goto error;
mas01mc@329 74 }
mas01cr@498 75
mas01cr@498 76 if((qspec->refine.flags & ADB_REFINE_RADIUS) && audiodb_index_exists(adb->path, qspec->refine.radius, qspec->qid.sequence_length)) {
mas01cr@498 77 if(audiodb_index_query_loop(adb, qspec, &qstate) < 0) {
mas01cr@498 78 goto error;
mas01cr@498 79 }
mas01cr@498 80 } else {
mas01cr@498 81 if(audiodb_query_loop(adb, qspec, &qstate)) {
mas01cr@498 82 goto error;
mas01cr@498 83 }
mas01mc@329 84 }
mas01mc@292 85
mas01cr@498 86 results = qstate.accumulator->get_points();
mas01cr@498 87
mas01cr@498 88 delete qstate.accumulator;
mas01cr@498 89 delete qstate.allowed_keys;
mas01cr@498 90
mas01cr@498 91 return results;
mas01cr@498 92
mas01cr@498 93 error:
mas01cr@498 94 if(qstate.accumulator)
mas01cr@498 95 delete qstate.accumulator;
mas01cr@498 96 if(qstate.allowed_keys)
mas01cr@498 97 delete qstate.allowed_keys;
mas01cr@498 98 return NULL;
mas01cr@239 99 }
mas01cr@239 100
mas01cr@498 101 int audiodb_query_free_results(adb_t *adb, const adb_query_spec_t *spec, adb_query_results_t *rs) {
mas01cr@498 102 free(rs->results);
mas01cr@498 103 free(rs);
mas01cr@498 104 return 0;
mas01cr@239 105 }
mas01cr@239 106
mas01cr@498 107 static void audiodb_initialize_arrays(adb_t *adb, const adb_query_spec_t *spec, int track, unsigned int numVectors, double *query, double *data_buffer, double **D, double **DD) {
mas01cr@239 108 unsigned int j, k, l, w;
mas01cr@239 109 double *dp, *qp, *sp;
mas01cr@239 110
mas01cr@498 111 const unsigned HOP_SIZE = spec->refine.hopsize;
mas01cr@498 112 const unsigned wL = spec->qid.sequence_length;
mas01cr@239 113
mas01cr@239 114 for(j = 0; j < numVectors; j++) {
mas01cr@239 115 // Sum products matrix
mas01cr@498 116 D[j] = new double[(*adb->track_lengths)[track]];
mas01cr@239 117 assert(D[j]);
mas01cr@239 118 // Matched filter matrix
mas01cr@498 119 DD[j]=new double[(*adb->track_lengths)[track]];
mas01cr@239 120 assert(DD[j]);
mas01cr@239 121 }
mas01cr@239 122
mas01cr@239 123 // Dot product
mas01cr@239 124 for(j = 0; j < numVectors; j++)
mas01cr@498 125 for(k = 0; k < (*adb->track_lengths)[track]; k++){
mas01cr@498 126 qp = query + j * adb->header->dim;
mas01cr@498 127 sp = data_buffer + k * adb->header->dim;
mas01cr@239 128 DD[j][k] = 0.0; // Initialize matched filter array
mas01cr@239 129 dp = &D[j][k]; // point to correlation cell j,k
mas01cr@239 130 *dp = 0.0; // initialize correlation cell
mas01cr@498 131 l = adb->header->dim; // size of vectors
mas01cr@239 132 while(l--)
mas01cr@239 133 *dp += *qp++ * *sp++;
mas01cr@239 134 }
mas01cr@239 135
mas01cr@239 136 // Matched Filter
mas01cr@239 137 // HOP SIZE == 1
mas01cr@239 138 double* spd;
mas01cr@239 139 if(HOP_SIZE == 1) { // HOP_SIZE = shingleHop
mas01cr@239 140 for(w = 0; w < wL; w++) {
mas01cr@239 141 for(j = 0; j < numVectors - w; j++) {
mas01cr@239 142 sp = DD[j];
mas01cr@239 143 spd = D[j+w] + w;
mas01cr@498 144 k = (*adb->track_lengths)[track] - w;
mas01mc@292 145 while(k--)
mas01mc@292 146 *sp++ += *spd++;
mas01cr@239 147 }
mas01cr@239 148 }
mas01cr@239 149 } else { // HOP_SIZE != 1
mas01cr@239 150 for(w = 0; w < wL; w++) {
mas01cr@239 151 for(j = 0; j < numVectors - w; j += HOP_SIZE) {
mas01cr@239 152 sp = DD[j];
mas01cr@239 153 spd = D[j+w]+w;
mas01cr@498 154 for(k = 0; k < (*adb->track_lengths)[track] - w; k += HOP_SIZE) {
mas01cr@239 155 *sp += *spd;
mas01cr@239 156 sp += HOP_SIZE;
mas01cr@239 157 spd += HOP_SIZE;
mas01cr@239 158 }
mas01cr@239 159 }
mas01cr@239 160 }
mas01cr@239 161 }
mas01cr@239 162 }
mas01cr@239 163
mas01cr@498 164 static void audiodb_delete_arrays(int track, unsigned int numVectors, double **D, double **DD) {
mas01cr@239 165 if(D != NULL) {
mas01cr@239 166 for(unsigned int j = 0; j < numVectors; j++) {
mas01cr@239 167 delete[] D[j];
mas01cr@239 168 }
mas01cr@239 169 }
mas01cr@239 170 if(DD != NULL) {
mas01cr@239 171 for(unsigned int j = 0; j < numVectors; j++) {
mas01cr@239 172 delete[] DD[j];
mas01cr@239 173 }
mas01cr@239 174 }
mas01cr@239 175 }
mas01cr@239 176
mas01cr@498 177 int audiodb_read_data(adb_t *adb, int trkfid, int track, double **data_buffer_p, size_t *data_buffer_size_p) {
mas01cr@498 178 uint32_t track_length = (*adb->track_lengths)[track];
mas01cr@498 179 size_t track_size = track_length * sizeof(double) * adb->header->dim;
mas01cr@498 180 if (track_size > *data_buffer_size_p) {
mas01cr@239 181 if(*data_buffer_p) {
mas01cr@239 182 free(*data_buffer_p);
mas01cr@239 183 }
mas01cr@239 184 {
mas01cr@498 185 *data_buffer_size_p = track_size;
mas01cr@498 186 void *tmp = malloc(track_size);
mas01cr@239 187 if (tmp == NULL) {
mas01cr@498 188 goto error;
mas01cr@239 189 }
mas01cr@239 190 *data_buffer_p = (double *) tmp;
mas01cr@239 191 }
mas01cr@239 192 }
mas01cr@239 193
mas01cr@498 194 read_or_goto_error(trkfid, *data_buffer_p, track_size);
mas01cr@498 195 return 0;
mas01cr@498 196
mas01cr@498 197 error:
mas01cr@498 198 return 1;
mas01cr@239 199 }
mas01cr@239 200
mas01mc@541 201 int audiodb_track_id_datum(adb_t *adb, uint32_t track_id, adb_datum_t *d, off_t vector_offset=0, size_t num_vectors=0, adb_fd_cache_t* cache=0){
mas01cr@498 202 off_t track_offset = (*adb->track_offsets)[track_id];
mas01mc@541 203
mas01cr@509 204 if(adb->header->flags & ADB_HEADER_FLAG_REFERENCES) {
mas01cr@498 205 /* create a reference/insert, then use adb_insert_create_datum() */
mas01mc@541 206 adb_reference_t *reference = NULL;
mas01mc@541 207 if(! (cache && cache->reference) ){
mas01mc@541 208 reference = (adb_reference_t *) malloc(sizeof(adb_reference_t));
mas01mc@541 209 reference->features = (char*) malloc(ADB_MAXSTR*sizeof(char));
mas01mc@541 210 if(adb->header->flags & ADB_HEADER_FLAG_POWER)
mas01mc@541 211 reference->power = (char*) malloc(ADB_MAXSTR*sizeof(char));
mas01mc@541 212 if(adb->header->flags & ADB_HEADER_FLAG_TIMES)
mas01mc@541 213 reference->times = (char*)malloc(ADB_MAXSTR*sizeof(char));
mas01mc@541 214 if(cache)
mas01mc@541 215 cache->reference = reference;
mas01cr@498 216 }
mas01mc@541 217 else
mas01mc@541 218 reference = cache->reference;
mas01mc@541 219
mas01mc@541 220 if(! (cache && cache->track_id==track_id) ){
mas01mc@541 221 if(cache)
mas01mc@541 222 cache->track_id = track_id;
mas01mc@541 223 lseek(adb->fd, adb->header->dataOffset + track_id * ADB_FILETABLE_ENTRY_SIZE, SEEK_SET);
mas01mc@541 224 read_or_goto_error(adb->fd, (void *)reference->features, ADB_MAXSTR);
mas01mc@541 225 if(adb->header->flags & ADB_HEADER_FLAG_POWER) {
mas01mc@541 226 lseek(adb->fd, adb->header->powerTableOffset + track_id * ADB_FILETABLE_ENTRY_SIZE, SEEK_SET);
mas01mc@541 227 read_or_goto_error(adb->fd, (void *)reference->power, ADB_MAXSTR);
mas01mc@541 228 }
mas01mc@541 229 if(adb->header->flags & ADB_HEADER_FLAG_TIMES) {
mas01mc@541 230 lseek(adb->fd, adb->header->timesTableOffset + track_id * ADB_FILETABLE_ENTRY_SIZE, SEEK_SET);
mas01mc@541 231 read_or_goto_error(adb->fd, (void *)reference->times, ADB_MAXSTR);
mas01mc@541 232 }
mas01cr@498 233 }
mas01mc@541 234
mas01mc@541 235 int retval = audiodb_insert_create_datum(reference, d, vector_offset*adb->header->dim*sizeof(double), num_vectors*adb->header->dim*sizeof(double), cache);
mas01mc@541 236 if(!cache){
mas01mc@541 237 audiodb_free_datum_reference(reference);
mas01mc@541 238 free(reference);
mas01mc@541 239 }
mas01mc@541 240 return retval;
mas01cr@498 241 } else {
mas01cr@498 242 /* initialize from sources of data that we already have */
mas01mc@539 243 if(num_vectors)
mas01mc@539 244 d->nvectors = num_vectors;
mas01mc@539 245 else
mas01mc@539 246 d->nvectors = (*adb->track_lengths)[track_id];
mas01cr@498 247 d->dim = adb->header->dim;
mas01cr@498 248 d->key = (*adb->keys)[track_id].c_str();
mas01cr@498 249 /* read out stuff from the database tables */
mas01cr@498 250 d->data = (double *) malloc(d->nvectors * d->dim * sizeof(double));
mas01mc@539 251 lseek(adb->fd, adb->header->dataOffset + track_offset + vector_offset*d->dim*sizeof(double), SEEK_SET);
mas01cr@498 252 read_or_goto_error(adb->fd, d->data, d->nvectors * d->dim * sizeof(double));
mas01cr@509 253 if(adb->header->flags & ADB_HEADER_FLAG_POWER) {
mas01cr@498 254 d->power = (double *) malloc(d->nvectors * sizeof(double));
mas01mc@539 255 lseek(adb->fd, adb->header->powerTableOffset + track_offset / d->dim + vector_offset*sizeof(double), SEEK_SET);
mas01cr@498 256 read_or_goto_error(adb->fd, d->power, d->nvectors * sizeof(double));
mas01cr@498 257 }
mas01cr@509 258 if(adb->header->flags & ADB_HEADER_FLAG_TIMES) {
mas01cr@498 259 d->times = (double *) malloc(2 * d->nvectors * sizeof(double));
mas01mc@539 260 lseek(adb->fd, adb->header->timesTableOffset + track_offset / d->dim + 2 * vector_offset*sizeof(double), SEEK_SET);
mas01cr@498 261 read_or_goto_error(adb->fd, d->times, 2 * d->nvectors * sizeof(double));
mas01cr@498 262 }
mas01cr@498 263 return 0;
mas01cr@498 264 }
mas01cr@498 265 error:
mas01cr@498 266 audiodb_free_datum(d);
mas01cr@498 267 return 1;
mas01cr@498 268 }
mas01mc@292 269
mas01cr@498 270 int audiodb_datum_qpointers(adb_datum_t *d, uint32_t sequence_length, double **vector_data, double **vector, adb_qpointers_internal_t *qpointers) {
mas01cr@498 271 uint32_t nvectors = d->nvectors;
mas01cr@498 272
mas01cr@498 273 qpointers->nvectors = nvectors;
mas01cr@498 274
mas01cr@498 275 size_t vector_size = nvectors * sizeof(double) * d->dim;
mas01cr@498 276 *vector_data = new double[vector_size];
mas01cr@498 277 memcpy(*vector_data, d->data, vector_size);
mas01cr@498 278
mas01cr@498 279 qpointers->l2norm_data = new double[vector_size / d->dim];
mas01cr@498 280 audiodb_l2norm_buffer(*vector_data, d->dim, nvectors, qpointers->l2norm_data);
mas01cr@498 281 audiodb_sequence_sum(qpointers->l2norm_data, nvectors, sequence_length);
mas01cr@498 282 audiodb_sequence_sqrt(qpointers->l2norm_data, nvectors, sequence_length);
mas01cr@498 283
mas01cr@498 284 if(d->power) {
mas01cr@498 285 qpointers->power_data = new double[vector_size / d->dim];
mas01cr@498 286 memcpy(qpointers->power_data, d->power, vector_size / d->dim);
mas01cr@498 287 audiodb_sequence_sum(qpointers->power_data, nvectors, sequence_length);
mas01cr@498 288 audiodb_sequence_average(qpointers->power_data, nvectors, sequence_length);
mas01cr@239 289 }
mas01cr@239 290
mas01cr@498 291 if(d->times) {
mas01cr@498 292 qpointers->mean_duration = new double[1];
mas01cr@498 293 *qpointers->mean_duration = 0;
mas01cr@498 294 for(unsigned int k = 0; k < nvectors; k++) {
mas01cr@498 295 *qpointers->mean_duration += d->times[2*k+1] - d->times[2*k];
mas01cr@239 296 }
mas01cr@498 297 *qpointers->mean_duration /= nvectors;
mas01cr@239 298 }
mas01cr@239 299
mas01cr@498 300 *vector = *vector_data;
mas01cr@498 301 qpointers->l2norm = qpointers->l2norm_data;
mas01cr@498 302 qpointers->power = qpointers->power_data;
mas01cr@498 303 return 0;
mas01cr@498 304 }
mas01cr@498 305
mas01mc@528 306 int audiodb_datum_qpointers_partial(adb_datum_t *d, uint32_t sequence_length, double **vector_data,
mas01mc@528 307 double **vector, adb_qpointers_internal_t *qpointers,
mas01mc@528 308 adb_qstate_internal_t *qstate){
mas01mc@528 309 uint32_t nvectors = d->nvectors;
mas01mc@528 310 qpointers->nvectors = nvectors;
mas01mc@528 311
mas01mc@539 312 PointPair pp = (*qstate->exact_evaluation_queue).top();
mas01mc@529 313 #ifdef _LSH_DEBUG_
mas01mc@539 314 cout << "tid=" << pp.trackID << " qpos=" << pp.qpos << " spos=" << pp.spos << endl;
mas01mc@539 315 cout.flush();
mas01mc@529 316 #endif
mas01mc@539 317
mas01mc@539 318 if(d->power) {
mas01mc@539 319 //memcpy(qpointers->power_data, d->power, seq_len_dbl);
mas01mc@539 320 audiodb_sequence_sum(d->power, sequence_length, sequence_length);
mas01mc@539 321 audiodb_sequence_average(d->power, sequence_length, sequence_length);
mas01mc@528 322 }
mas01mc@539 323
mas01mc@528 324 if(d->times) {
mas01mc@528 325 qpointers->mean_duration = new double[1];
mas01mc@528 326 *qpointers->mean_duration = 0;
mas01mc@528 327 for(unsigned int k = 0; k < nvectors; k++) {
mas01mc@528 328 *qpointers->mean_duration += d->times[2*k+1] - d->times[2*k];
mas01mc@528 329 }
mas01mc@528 330 *qpointers->mean_duration /= nvectors;
mas01mc@528 331 }
mas01mc@539 332
mas01mc@531 333 *vector = d->data;
mas01mc@531 334 *vector_data = d->data;
mas01mc@531 335 qpointers->l2norm = 0 ;
mas01mc@539 336 qpointers->power = d->power;
mas01mc@528 337 return 0;
mas01mc@528 338 }
mas01mc@528 339
mas01cr@498 340 int audiodb_query_spec_qpointers(adb_t *adb, const adb_query_spec_t *spec, double **vector_data, double **vector, adb_qpointers_internal_t *qpointers) {
mas01cr@498 341 adb_datum_t *datum;
mas01cr@498 342 adb_datum_t d = {0};
mas01cr@498 343 uint32_t sequence_length;
mas01cr@498 344 uint32_t sequence_start;
mas01cr@498 345
mas01cr@498 346 datum = spec->qid.datum;
mas01cr@498 347 sequence_length = spec->qid.sequence_length;
mas01cr@498 348 sequence_start = spec->qid.sequence_start;
mas01cr@498 349
mas01cr@498 350 if(datum->data) {
mas01cr@498 351 if(datum->dim != adb->header->dim) {
mas01cr@498 352 return 1;
mas01cr@239 353 }
mas01cr@498 354 /* initialize d, and mark that nothing needs freeing later. */
mas01cr@498 355 d = *datum;
mas01cr@498 356 datum = &d;
mas01cr@498 357 } else if (datum->key) {
mas01cr@498 358 uint32_t track_id;
mas01cr@498 359 if((track_id = audiodb_key_index(adb, datum->key)) == (uint32_t) -1) {
mas01cr@498 360 return 1;
mas01cr@498 361 }
mas01cr@498 362 audiodb_track_id_datum(adb, track_id, &d);
mas01cr@498 363 } else {
mas01cr@498 364 return 1;
mas01cr@239 365 }
mas01cr@239 366
mas01cr@498 367 /* FIXME: check the overflow logic here */
mas01cr@498 368 if(sequence_start + sequence_length > d.nvectors) {
mas01cr@498 369 if(datum != &d) {
mas01cr@498 370 audiodb_free_datum(&d);
mas01cr@498 371 }
mas01cr@498 372 return 1;
mas01cr@498 373 }
mas01cr@239 374
mas01cr@498 375 audiodb_datum_qpointers(&d, sequence_length, vector_data, vector, qpointers);
mas01cr@498 376
mas01cr@498 377 /* Finally, if applicable, set up the moving qpointers. */
mas01cr@498 378 if(spec->qid.flags & ADB_QID_FLAG_EXHAUSTIVE) {
mas01cr@498 379 /* the qpointers are already at the start, and so correct. */
mas01cr@498 380 } else {
mas01cr@498 381 /* adjust the qpointers to point to the correct place in the sequence */
mas01cr@498 382 *vector = *vector_data + spec->qid.sequence_start * d.dim;
mas01cr@498 383 qpointers->l2norm = qpointers->l2norm_data + spec->qid.sequence_start;
mas01cr@498 384 if(d.power) {
mas01cr@498 385 qpointers->power = qpointers->power_data + spec->qid.sequence_start;
mas01cr@239 386 }
mas01cr@498 387 qpointers->nvectors = sequence_length;
mas01cr@239 388 }
mas01cr@498 389
mas01cr@498 390 /* Clean up: free any bits of datum that we have ourselves
mas01cr@498 391 * allocated. */
mas01cr@498 392 if(datum != &d) {
mas01cr@498 393 audiodb_free_datum(&d);
mas01cr@498 394 }
mas01cr@498 395
mas01cr@498 396 return 0;
mas01cr@239 397 }
mas01cr@239 398
mas01cr@498 399 static int audiodb_set_up_dbpointers(adb_t *adb, const adb_query_spec_t *spec, adb_qpointers_internal_t *dbpointers) {
mas01cr@498 400 uint32_t nvectors = adb->header->length / (adb->header->dim * sizeof(double));
mas01cr@498 401 uint32_t sequence_length = spec->qid.sequence_length;
mas01mc@292 402
mas01cr@498 403 bool using_power = spec->refine.flags & (ADB_REFINE_ABSOLUTE_THRESHOLD|ADB_REFINE_RELATIVE_THRESHOLD);
mas01cr@498 404 bool using_times = spec->refine.flags & ADB_REFINE_DURATION_RATIO;
mas01cr@498 405 double *times_table = NULL;
mas01cr@498 406
mas01cr@498 407
mas01cr@498 408 dbpointers->nvectors = nvectors;
mas01cr@498 409 dbpointers->l2norm_data = new double[nvectors];
mas01cr@498 410
mas01cr@498 411 double *snpp = dbpointers->l2norm_data, *sppp = 0;
mas01cr@498 412 lseek(adb->fd, adb->header->l2normTableOffset, SEEK_SET);
mas01cr@498 413 read_or_goto_error(adb->fd, dbpointers->l2norm_data, nvectors * sizeof(double));
mas01cr@498 414
mas01cr@498 415 if (using_power) {
mas01cr@509 416 if (!(adb->header->flags & ADB_HEADER_FLAG_POWER)) {
mas01cr@498 417 goto error;
mas01cr@498 418 }
mas01cr@498 419 dbpointers->power_data = new double[nvectors];
mas01cr@498 420 sppp = dbpointers->power_data;
mas01cr@498 421 lseek(adb->fd, adb->header->powerTableOffset, SEEK_SET);
mas01cr@498 422 read_or_goto_error(adb->fd, dbpointers->power_data, nvectors * sizeof(double));
mas01mc@292 423 }
mas01mc@292 424
mas01cr@498 425 for(unsigned int i = 0; i < adb->header->numFiles; i++){
mas01cr@498 426 size_t track_length = (*adb->track_lengths)[i];
mas01cr@498 427 if(track_length >= sequence_length) {
mas01cr@498 428 audiodb_sequence_sum(snpp, track_length, sequence_length);
mas01cr@498 429 audiodb_sequence_sqrt(snpp, track_length, sequence_length);
mas01cr@498 430 if (using_power) {
mas01cr@498 431 audiodb_sequence_sum(sppp, track_length, sequence_length);
mas01cr@498 432 audiodb_sequence_average(sppp, track_length, sequence_length);
mas01cr@498 433 }
mas01mc@324 434 }
mas01cr@498 435 snpp += track_length;
mas01cr@498 436 if (using_power) {
mas01cr@498 437 sppp += track_length;
mas01mc@324 438 }
mas01mc@292 439 }
mas01mc@292 440
mas01cr@498 441 if (using_times) {
mas01cr@509 442 if(!(adb->header->flags & ADB_HEADER_FLAG_TIMES)) {
mas01cr@498 443 goto error;
mas01cr@498 444 }
mas01mc@292 445
mas01cr@498 446 dbpointers->mean_duration = new double[adb->header->numFiles];
mas01cr@498 447
mas01cr@498 448 times_table = (double *) malloc(2 * nvectors * sizeof(double));
mas01cr@498 449 if(!times_table) {
mas01cr@498 450 goto error;
mas01cr@498 451 }
mas01cr@498 452 lseek(adb->fd, adb->header->timesTableOffset, SEEK_SET);
mas01cr@498 453 read_or_goto_error(adb->fd, times_table, 2 * nvectors * sizeof(double));
mas01cr@498 454 for(unsigned int k = 0; k < adb->header->numFiles; k++) {
mas01cr@498 455 size_t track_length = (*adb->track_lengths)[k];
mas01cr@498 456 unsigned int j;
mas01cr@498 457 dbpointers->mean_duration[k] = 0.0;
mas01cr@498 458 for(j = 0; j < track_length; j++) {
mas01cr@498 459 dbpointers->mean_duration[k] += times_table[2*j+1] - times_table[2*j];
mas01mc@292 460 }
mas01cr@498 461 dbpointers->mean_duration[k] /= j;
mas01mc@292 462 }
mas01cr@498 463
mas01cr@498 464 free(times_table);
mas01cr@498 465 times_table = NULL;
mas01mc@292 466 }
mas01cr@498 467
mas01cr@498 468 dbpointers->l2norm = dbpointers->l2norm_data;
mas01cr@498 469 dbpointers->power = dbpointers->power_data;
mas01cr@498 470 return 0;
mas01cr@498 471
mas01cr@498 472 error:
mas01cr@498 473 if(dbpointers->l2norm_data) {
mas01cr@498 474 delete [] dbpointers->l2norm_data;
mas01cr@498 475 }
mas01cr@498 476 if(dbpointers->power_data) {
mas01cr@498 477 delete [] dbpointers->power_data;
mas01cr@498 478 }
mas01cr@498 479 if(dbpointers->mean_duration) {
mas01cr@498 480 delete [] dbpointers->mean_duration;
mas01cr@498 481 }
mas01cr@498 482 if(times_table) {
mas01cr@498 483 free(times_table);
mas01cr@498 484 }
mas01cr@498 485 return 1;
mas01cr@498 486
mas01mc@292 487 }
mas01mc@292 488
mas01cr@498 489 int audiodb_query_queue_loop(adb_t *adb, const adb_query_spec_t *spec, adb_qstate_internal_t *qstate, double *query, adb_qpointers_internal_t *qpointers) {
mas01cr@498 490 adb_qpointers_internal_t dbpointers = {0};
mas01mc@292 491
mas01cr@498 492 uint32_t sequence_length = spec->qid.sequence_length;
mas01cr@498 493 bool power_refine = spec->refine.flags & (ADB_REFINE_ABSOLUTE_THRESHOLD|ADB_REFINE_RELATIVE_THRESHOLD);
mas01cr@239 494
mas01cr@498 495 if(qstate->exact_evaluation_queue->size() == 0) {
mas01cr@498 496 return 0;
mas01cr@239 497 }
mas01cr@239 498
mas01cr@498 499 /* We are guaranteed that the order of points is sorted by:
mas01cr@498 500 * {trackID, spos, qpos} so we can be relatively efficient in
mas01cr@498 501 * initialization of track data. We assume that points usually
mas01cr@498 502 * don't overlap, so we will use exhaustive dot product evaluation
mas01cr@498 503 * (instead of memoization of partial sums, as in query_loop()).
mas01cr@498 504 */
mas01cr@498 505 double dist;
mas01cr@498 506 double *dbdata = 0, *dbdata_pointer;
mas01cr@498 507 Uns32T npairs = qstate->exact_evaluation_queue->size();
mas01mc@541 508 Uns32T currentTrack = qstate->exact_evaluation_queue->top().trackID+1; // i.e. not first track
mas01mc@527 509 #ifdef _LSH_DEBUG_
mas01mc@527 510 cout << "Num vector pairs to evaluate: " << npairs << "..." << endl;
mas01mc@527 511 cout.flush();
mas01mc@527 512 #endif
mas01mc@531 513 adb_datum_t d = {0};
mas01mc@541 514 adb_fd_cache_t c = {0};
mas01mc@541 515 c.track_id = currentTrack;
mas01cr@498 516 while(npairs--) {
mas01cr@498 517 PointPair pp = qstate->exact_evaluation_queue->top();
mas01mc@541 518 if(pp.trackID != currentTrack){
mas01mc@541 519 audiodb_free_datum(&d);
mas01mc@541 520 currentTrack = pp.trackID;
mas01mc@541 521 }
mas01mc@539 522 maybe_delete_array(dbpointers.mean_duration);
mas01mc@541 523 if(audiodb_track_id_datum(adb, pp.trackID, &d, pp.spos, sequence_length, &c)) {
mas01mc@539 524 delete qstate->exact_evaluation_queue;
mas01mc@539 525 delete qstate->set;
mas01mc@541 526 audiodb_free_datum(&d);
mas01mc@541 527 audiodb_free_datum_cache(&c);
mas01mc@539 528 return 1;
mas01mc@539 529 }
mas01mc@539 530
mas01mc@539 531 if(audiodb_datum_qpointers_partial(&d, sequence_length, &dbdata, &dbdata_pointer, &dbpointers, qstate)) {
mas01mc@539 532 delete qstate->exact_evaluation_queue;
mas01mc@539 533 delete qstate->set;
mas01mc@531 534 audiodb_free_datum(&d);
mas01mc@541 535 audiodb_free_datum_cache(&c);
mas01mc@539 536 return 1;
mas01mc@539 537 }
mas01mc@531 538
mas01cr@498 539 Uns32T qPos = (spec->qid.flags & ADB_QID_FLAG_EXHAUSTIVE) ? pp.qpos : 0;
mas01cr@498 540 // Test power thresholds before computing distance
mas01mc@539 541 if( ( (!power_refine) || audiodb_powers_acceptable(&spec->refine, qpointers->power[qPos], dbpointers.power[0])) &&
mas01mc@539 542 ( qPos<qpointers->nvectors-sequence_length+1 && pp.spos<(*adb->track_lengths)[pp.trackID]-sequence_length+1 ) ){
mas01mc@531 543 // Compute distance
mas01mc@539 544 dist = audiodb_dot_product(query + qPos*adb->header->dim, dbdata, adb->header->dim*sequence_length);
mas01mc@531 545 double qn = audiodb_dot_product(query + qPos*adb->header->dim, query + qPos*adb->header->dim, adb->header->dim*sequence_length);
mas01mc@539 546 double sn = audiodb_dot_product(dbdata, dbdata, adb->header->dim*sequence_length);
mas01mc@531 547 qn = sqrt(qn);
mas01mc@531 548 sn = sqrt(sn);
mas01cr@498 549 switch(spec->params.distance) {
mas01cr@498 550 case ADB_DISTANCE_EUCLIDEAN_NORMED:
mas01cr@498 551 dist = 2 - (2/(qn*sn))*dist;
mas01cr@498 552 break;
mas01cr@498 553 case ADB_DISTANCE_EUCLIDEAN:
mas01cr@498 554 dist = qn*qn + sn*sn - 2*dist;
mas01cr@498 555 break;
mas01cr@498 556 }
mas01cr@498 557 if((!(spec->refine.flags & ADB_REFINE_RADIUS)) ||
mas01cr@509 558 dist <= (spec->refine.radius + ADB_DISTANCE_TOLERANCE)) {
mas01cr@498 559 adb_result_t r;
mas01cr@498 560 r.key = (*adb->keys)[pp.trackID].c_str();
mas01cr@498 561 r.dist = dist;
mas01cr@498 562 r.qpos = pp.qpos;
mas01cr@498 563 r.ipos = pp.spos;
mas01cr@498 564 qstate->accumulator->add_point(&r);
mas01cr@239 565 }
mas01cr@239 566 }
mas01cr@498 567 qstate->exact_evaluation_queue->pop();
mas01mc@292 568 }
mas01mc@474 569
mas01mc@315 570 // Cleanup
mas01mc@541 571 audiodb_free_datum(&d);
mas01mc@541 572 audiodb_free_datum_cache(&c);
mas01cr@509 573 maybe_delete_array(dbpointers.mean_duration);
mas01cr@498 574 delete qstate->exact_evaluation_queue;
mas01mc@529 575 delete qstate->set;
mas01cr@498 576 return 0;
mas01mc@292 577 }
mas01mc@292 578
mas01cr@498 579 int audiodb_query_loop(adb_t *adb, const adb_query_spec_t *spec, adb_qstate_internal_t *qstate) {
mas01cr@498 580
mas01cr@498 581 double *query, *query_data;
mas01cr@498 582 adb_qpointers_internal_t qpointers = {0}, dbpointers = {0};
mas01mc@292 583
mas01cr@498 584 bool power_refine = spec->refine.flags & (ADB_REFINE_ABSOLUTE_THRESHOLD|ADB_REFINE_RELATIVE_THRESHOLD);
mas01cr@239 585
mas01cr@509 586 if(adb->header->flags & ADB_HEADER_FLAG_REFERENCES) {
mas01cr@498 587 /* FIXME: actually it would be nice to support this mode of
mas01cr@498 588 * operation, but for now... */
mas01cr@498 589 return 1;
mas01cr@498 590 }
mas01mc@324 591
mas01cr@498 592 if(audiodb_query_spec_qpointers(adb, spec, &query_data, &query, &qpointers)) {
mas01cr@498 593 return 1;
mas01cr@498 594 }
mas01cr@239 595
mas01cr@498 596 if(audiodb_set_up_dbpointers(adb, spec, &dbpointers)) {
mas01cr@498 597 return 1;
mas01cr@498 598 }
mas01cr@239 599
mas01cr@498 600 unsigned j,k,track,trackOffset=0, HOP_SIZE = spec->refine.hopsize;
mas01cr@498 601 unsigned wL = spec->qid.sequence_length;
mas01cr@239 602 double **D = 0; // Differences query and target
mas01cr@239 603 double **DD = 0; // Matched filter distance
mas01cr@239 604
mas01cr@498 605 D = new double*[qpointers.nvectors]; // pre-allocate
mas01cr@498 606 DD = new double*[qpointers.nvectors];
mas01cr@239 607
mas01cr@239 608 off_t trackIndexOffset;
mas01cr@239 609
mas01cr@239 610 // Track loop
mas01cr@239 611 size_t data_buffer_size = 0;
mas01cr@239 612 double *data_buffer = 0;
mas01cr@498 613 lseek(adb->fd, adb->header->dataOffset, SEEK_SET);
mas01cr@239 614
mas01cr@498 615 std::set<std::string>::iterator keys_end = qstate->allowed_keys->end();
mas01cr@498 616 for(track = 0; track < adb->header->numFiles; track++) {
mas01cr@498 617 unsigned t = track;
mas01cr@498 618
mas01cr@498 619 while (qstate->allowed_keys->find((*adb->keys)[track]) == keys_end) {
mas01cr@498 620 track++;
mas01cr@498 621 if(track == adb->header->numFiles) {
mas01cr@498 622 goto loop_finish;
mas01cr@239 623 }
mas01cr@239 624 }
mas01cr@498 625 trackOffset = (*adb->track_offsets)[track];
mas01cr@498 626 if(track != t) {
mas01cr@498 627 lseek(adb->fd, adb->header->dataOffset + trackOffset, SEEK_SET);
mas01cr@498 628 }
mas01cr@498 629 trackIndexOffset = trackOffset / (adb->header->dim * sizeof(double)); // dbpointers.nvectors offset
mas01cr@239 630
mas01cr@498 631 if(audiodb_read_data(adb, adb->fd, track, &data_buffer, &data_buffer_size)) {
mas01cr@498 632 return 1;
mas01mc@292 633 }
mas01cr@498 634 if(wL <= (*adb->track_lengths)[track]) { // test for short sequences
mas01cr@498 635
mas01cr@498 636 audiodb_initialize_arrays(adb, spec, track, qpointers.nvectors, query, data_buffer, D, DD);
mas01mc@292 637
mas01cr@498 638 if((!(spec->refine.flags & ADB_REFINE_DURATION_RATIO)) ||
mas01cr@498 639 fabs(dbpointers.mean_duration[track]-qpointers.mean_duration[0]) < qpointers.mean_duration[0]*spec->refine.duration_ratio) {
mas01cr@239 640
mas01cr@239 641 // Search for minimum distance by shingles (concatenated vectors)
mas01cr@498 642 for(j = 0; j <= qpointers.nvectors - wL; j += HOP_SIZE) {
mas01cr@498 643 for(k = 0; k <= (*adb->track_lengths)[track] - wL; k += HOP_SIZE) {
mas01cr@498 644 double thisDist = 0;
mas01cr@498 645 double qn = qpointers.l2norm[j];
mas01cr@498 646 double sn = dbpointers.l2norm[trackIndexOffset + k];
mas01cr@498 647 switch(spec->params.distance) {
mas01cr@498 648 case ADB_DISTANCE_EUCLIDEAN_NORMED:
mas01cr@498 649 thisDist = 2-(2/(qn*sn))*DD[j][k];
mas01cr@498 650 break;
mas01cr@498 651 case ADB_DISTANCE_EUCLIDEAN:
mas01cr@498 652 thisDist = qn*qn + sn*sn - 2*DD[j][k];
mas01cr@498 653 break;
mas01cr@498 654 case ADB_DISTANCE_DOT_PRODUCT:
mas01cr@498 655 thisDist = DD[j][k];
mas01cr@498 656 break;
mas01cr@498 657 }
mas01cr@239 658 // Power test
mas01cr@498 659 if ((!power_refine) || audiodb_powers_acceptable(&spec->refine, qpointers.power[j], dbpointers.power[trackIndexOffset + k])) {
mas01cr@239 660 // radius test
mas01cr@498 661 if((!(spec->refine.flags & ADB_REFINE_RADIUS)) ||
mas01cr@509 662 thisDist <= (spec->refine.radius + ADB_DISTANCE_TOLERANCE)) {
mas01cr@498 663 adb_result_t r;
mas01cr@498 664 r.key = (*adb->keys)[track].c_str();
mas01cr@498 665 r.dist = thisDist;
mas01cr@498 666 if(spec->qid.flags & ADB_QID_FLAG_EXHAUSTIVE) {
mas01cr@498 667 r.qpos = j;
mas01cr@498 668 } else {
mas01cr@498 669 r.qpos = spec->qid.sequence_start;
mas01cr@498 670 }
mas01cr@498 671 r.ipos = k;
mas01cr@498 672 qstate->accumulator->add_point(&r);
mas01cr@239 673 }
mas01cr@239 674 }
mas01cr@239 675 }
mas01cr@239 676 }
mas01cr@239 677 } // Duration match
mas01cr@498 678 audiodb_delete_arrays(track, qpointers.nvectors, D, DD);
mas01cr@239 679 }
mas01cr@239 680 }
mas01cr@239 681
mas01cr@498 682 loop_finish:
mas01cr@498 683
mas01cr@239 684 free(data_buffer);
mas01cr@239 685
mas01cr@239 686 // Clean up
mas01cr@239 687 if(query_data)
mas01cr@239 688 delete[] query_data;
mas01cr@498 689 if(qpointers.l2norm_data)
mas01cr@498 690 delete[] qpointers.l2norm_data;
mas01cr@498 691 if(qpointers.power_data)
mas01cr@498 692 delete[] qpointers.power_data;
mas01cr@498 693 if(qpointers.mean_duration)
mas01cr@498 694 delete[] qpointers.mean_duration;
mas01cr@498 695 if(dbpointers.power_data)
mas01cr@498 696 delete[] dbpointers.power_data;
mas01cr@498 697 if(dbpointers.l2norm_data)
mas01cr@498 698 delete[] dbpointers.l2norm_data;
mas01cr@239 699 if(D)
mas01cr@239 700 delete[] D;
mas01cr@239 701 if(DD)
mas01cr@239 702 delete[] DD;
mas01cr@498 703 if(dbpointers.mean_duration)
mas01cr@498 704 delete[] dbpointers.mean_duration;
mas01cr@498 705
mas01cr@498 706 return 0;
mas01cr@239 707 }