annotate query.cpp @ 529:e532666226bc multiprobeLSH

Fixed a problem with inserting into exact_evaluation_queue, duplicate pairs were being inserted when querying multiple hashtables. That is now fixed by adding a unique constraint using set<PointPair> inserts and testing. This should speed things up quite a bit (like, 10-fold with default num tables).
author mas01mc
date Fri, 30 Jan 2009 14:58:35 +0000
parents 561339c7fd26
children aa715b3e18db
rev   line source
mas01cr@509 1 extern "C" {
mas01cr@509 2 #include "audioDB_API.h"
mas01cr@509 3 }
mas01cr@498 4 #include "audioDB-internals.h"
mas01cr@498 5 #include "accumulators.h"
mas01cr@239 6
mas01cr@498 7 bool audiodb_powers_acceptable(const adb_query_refine_t *r, double p1, double p2) {
mas01cr@498 8 if (r->flags & ADB_REFINE_ABSOLUTE_THRESHOLD) {
mas01cr@498 9 if ((p1 < r->absolute_threshold) || (p2 < r->absolute_threshold)) {
mas01cr@239 10 return false;
mas01cr@239 11 }
mas01cr@239 12 }
mas01cr@498 13 if (r->flags & ADB_REFINE_RELATIVE_THRESHOLD) {
mas01cr@498 14 if (fabs(p1-p2) > fabs(r->relative_threshold)) {
mas01cr@239 15 return false;
mas01cr@239 16 }
mas01cr@239 17 }
mas01cr@239 18 return true;
mas01cr@239 19 }
mas01cr@239 20
mas01cr@498 21 adb_query_results_t *audiodb_query_spec(adb_t *adb, const adb_query_spec_t *qspec) {
mas01cr@498 22 adb_qstate_internal_t qstate = {0};
mas01cr@498 23 qstate.allowed_keys = new std::set<std::string>;
mas01cr@498 24 adb_query_results_t *results;
mas01cr@498 25 if(qspec->refine.flags & ADB_REFINE_INCLUDE_KEYLIST) {
mas01cr@498 26 for(unsigned int k = 0; k < qspec->refine.include.nkeys; k++) {
mas01cr@498 27 qstate.allowed_keys->insert(qspec->refine.include.keys[k]);
mas01cr@498 28 }
mas01cr@498 29 } else {
mas01cr@498 30 for(unsigned int k = 0; k < adb->header->numFiles; k++) {
mas01cr@498 31 qstate.allowed_keys->insert((*adb->keys)[k]);
mas01cr@498 32 }
mas01cr@498 33 }
mas01cr@498 34 if(qspec->refine.flags & ADB_REFINE_EXCLUDE_KEYLIST) {
mas01cr@498 35 for(unsigned int k = 0; k < qspec->refine.exclude.nkeys; k++) {
mas01cr@498 36 qstate.allowed_keys->erase(qspec->refine.exclude.keys[k]);
mas01cr@498 37 }
mas01cr@498 38 }
mas01mc@292 39
mas01cr@498 40 switch(qspec->params.distance) {
mas01cr@498 41 case ADB_DISTANCE_DOT_PRODUCT:
mas01cr@498 42 switch(qspec->params.accumulation) {
mas01cr@498 43 case ADB_ACCUMULATION_DB:
mas01cr@498 44 qstate.accumulator = new DBAccumulator<adb_result_dist_gt>(qspec->params.npoints);
mas01cr@498 45 break;
mas01cr@498 46 case ADB_ACCUMULATION_PER_TRACK:
mas01cr@498 47 qstate.accumulator = new PerTrackAccumulator<adb_result_dist_gt>(qspec->params.npoints, qspec->params.ntracks);
mas01cr@498 48 break;
mas01cr@498 49 case ADB_ACCUMULATION_ONE_TO_ONE:
mas01cr@498 50 qstate.accumulator = new NearestAccumulator<adb_result_dist_gt>();
mas01cr@498 51 break;
mas01cr@498 52 default:
mas01cr@498 53 goto error;
mas01cr@239 54 }
mas01cr@239 55 break;
mas01cr@498 56 case ADB_DISTANCE_EUCLIDEAN_NORMED:
mas01cr@498 57 case ADB_DISTANCE_EUCLIDEAN:
mas01cr@498 58 switch(qspec->params.accumulation) {
mas01cr@498 59 case ADB_ACCUMULATION_DB:
mas01cr@498 60 qstate.accumulator = new DBAccumulator<adb_result_dist_lt>(qspec->params.npoints);
mas01cr@498 61 break;
mas01cr@498 62 case ADB_ACCUMULATION_PER_TRACK:
mas01cr@498 63 qstate.accumulator = new PerTrackAccumulator<adb_result_dist_lt>(qspec->params.npoints, qspec->params.ntracks);
mas01cr@498 64 break;
mas01cr@498 65 case ADB_ACCUMULATION_ONE_TO_ONE:
mas01cr@498 66 qstate.accumulator = new NearestAccumulator<adb_result_dist_lt>();
mas01cr@498 67 break;
mas01cr@498 68 default:
mas01cr@498 69 goto error;
mas01mc@263 70 }
mas01mc@263 71 break;
mas01cr@239 72 default:
mas01cr@498 73 goto error;
mas01mc@329 74 }
mas01cr@498 75
mas01cr@498 76 if((qspec->refine.flags & ADB_REFINE_RADIUS) && audiodb_index_exists(adb->path, qspec->refine.radius, qspec->qid.sequence_length)) {
mas01cr@498 77 if(audiodb_index_query_loop(adb, qspec, &qstate) < 0) {
mas01cr@498 78 goto error;
mas01cr@498 79 }
mas01cr@498 80 } else {
mas01cr@498 81 if(audiodb_query_loop(adb, qspec, &qstate)) {
mas01cr@498 82 goto error;
mas01cr@498 83 }
mas01mc@329 84 }
mas01mc@292 85
mas01cr@498 86 results = qstate.accumulator->get_points();
mas01cr@498 87
mas01cr@498 88 delete qstate.accumulator;
mas01cr@498 89 delete qstate.allowed_keys;
mas01cr@498 90
mas01cr@498 91 return results;
mas01cr@498 92
mas01cr@498 93 error:
mas01cr@498 94 if(qstate.accumulator)
mas01cr@498 95 delete qstate.accumulator;
mas01cr@498 96 if(qstate.allowed_keys)
mas01cr@498 97 delete qstate.allowed_keys;
mas01cr@498 98 return NULL;
mas01cr@239 99 }
mas01cr@239 100
mas01cr@498 101 int audiodb_query_free_results(adb_t *adb, const adb_query_spec_t *spec, adb_query_results_t *rs) {
mas01cr@498 102 free(rs->results);
mas01cr@498 103 free(rs);
mas01cr@498 104 return 0;
mas01cr@239 105 }
mas01cr@239 106
mas01cr@498 107 static void audiodb_initialize_arrays(adb_t *adb, const adb_query_spec_t *spec, int track, unsigned int numVectors, double *query, double *data_buffer, double **D, double **DD) {
mas01cr@239 108 unsigned int j, k, l, w;
mas01cr@239 109 double *dp, *qp, *sp;
mas01cr@239 110
mas01cr@498 111 const unsigned HOP_SIZE = spec->refine.hopsize;
mas01cr@498 112 const unsigned wL = spec->qid.sequence_length;
mas01cr@239 113
mas01cr@239 114 for(j = 0; j < numVectors; j++) {
mas01cr@239 115 // Sum products matrix
mas01cr@498 116 D[j] = new double[(*adb->track_lengths)[track]];
mas01cr@239 117 assert(D[j]);
mas01cr@239 118 // Matched filter matrix
mas01cr@498 119 DD[j]=new double[(*adb->track_lengths)[track]];
mas01cr@239 120 assert(DD[j]);
mas01cr@239 121 }
mas01cr@239 122
mas01cr@239 123 // Dot product
mas01cr@239 124 for(j = 0; j < numVectors; j++)
mas01cr@498 125 for(k = 0; k < (*adb->track_lengths)[track]; k++){
mas01cr@498 126 qp = query + j * adb->header->dim;
mas01cr@498 127 sp = data_buffer + k * adb->header->dim;
mas01cr@239 128 DD[j][k] = 0.0; // Initialize matched filter array
mas01cr@239 129 dp = &D[j][k]; // point to correlation cell j,k
mas01cr@239 130 *dp = 0.0; // initialize correlation cell
mas01cr@498 131 l = adb->header->dim; // size of vectors
mas01cr@239 132 while(l--)
mas01cr@239 133 *dp += *qp++ * *sp++;
mas01cr@239 134 }
mas01cr@239 135
mas01cr@239 136 // Matched Filter
mas01cr@239 137 // HOP SIZE == 1
mas01cr@239 138 double* spd;
mas01cr@239 139 if(HOP_SIZE == 1) { // HOP_SIZE = shingleHop
mas01cr@239 140 for(w = 0; w < wL; w++) {
mas01cr@239 141 for(j = 0; j < numVectors - w; j++) {
mas01cr@239 142 sp = DD[j];
mas01cr@239 143 spd = D[j+w] + w;
mas01cr@498 144 k = (*adb->track_lengths)[track] - w;
mas01mc@292 145 while(k--)
mas01mc@292 146 *sp++ += *spd++;
mas01cr@239 147 }
mas01cr@239 148 }
mas01cr@239 149 } else { // HOP_SIZE != 1
mas01cr@239 150 for(w = 0; w < wL; w++) {
mas01cr@239 151 for(j = 0; j < numVectors - w; j += HOP_SIZE) {
mas01cr@239 152 sp = DD[j];
mas01cr@239 153 spd = D[j+w]+w;
mas01cr@498 154 for(k = 0; k < (*adb->track_lengths)[track] - w; k += HOP_SIZE) {
mas01cr@239 155 *sp += *spd;
mas01cr@239 156 sp += HOP_SIZE;
mas01cr@239 157 spd += HOP_SIZE;
mas01cr@239 158 }
mas01cr@239 159 }
mas01cr@239 160 }
mas01cr@239 161 }
mas01cr@239 162 }
mas01cr@239 163
mas01cr@498 164 static void audiodb_delete_arrays(int track, unsigned int numVectors, double **D, double **DD) {
mas01cr@239 165 if(D != NULL) {
mas01cr@239 166 for(unsigned int j = 0; j < numVectors; j++) {
mas01cr@239 167 delete[] D[j];
mas01cr@239 168 }
mas01cr@239 169 }
mas01cr@239 170 if(DD != NULL) {
mas01cr@239 171 for(unsigned int j = 0; j < numVectors; j++) {
mas01cr@239 172 delete[] DD[j];
mas01cr@239 173 }
mas01cr@239 174 }
mas01cr@239 175 }
mas01cr@239 176
mas01cr@498 177 int audiodb_read_data(adb_t *adb, int trkfid, int track, double **data_buffer_p, size_t *data_buffer_size_p) {
mas01cr@498 178 uint32_t track_length = (*adb->track_lengths)[track];
mas01cr@498 179 size_t track_size = track_length * sizeof(double) * adb->header->dim;
mas01cr@498 180 if (track_size > *data_buffer_size_p) {
mas01cr@239 181 if(*data_buffer_p) {
mas01cr@239 182 free(*data_buffer_p);
mas01cr@239 183 }
mas01cr@239 184 {
mas01cr@498 185 *data_buffer_size_p = track_size;
mas01cr@498 186 void *tmp = malloc(track_size);
mas01cr@239 187 if (tmp == NULL) {
mas01cr@498 188 goto error;
mas01cr@239 189 }
mas01cr@239 190 *data_buffer_p = (double *) tmp;
mas01cr@239 191 }
mas01cr@239 192 }
mas01cr@239 193
mas01cr@498 194 read_or_goto_error(trkfid, *data_buffer_p, track_size);
mas01cr@498 195 return 0;
mas01cr@498 196
mas01cr@498 197 error:
mas01cr@498 198 return 1;
mas01cr@239 199 }
mas01cr@239 200
mas01cr@498 201 int audiodb_track_id_datum(adb_t *adb, uint32_t track_id, adb_datum_t *d) {
mas01cr@498 202 off_t track_offset = (*adb->track_offsets)[track_id];
mas01cr@509 203 if(adb->header->flags & ADB_HEADER_FLAG_REFERENCES) {
mas01cr@498 204 /* create a reference/insert, then use adb_insert_create_datum() */
mas01cr@498 205 adb_reference_t reference = {0};
mas01cr@509 206 char features[ADB_MAXSTR], power[ADB_MAXSTR], times[ADB_MAXSTR];
mas01cr@509 207 lseek(adb->fd, adb->header->dataOffset + track_id * ADB_FILETABLE_ENTRY_SIZE, SEEK_SET);
mas01cr@509 208 read_or_goto_error(adb->fd, features, ADB_MAXSTR);
mas01cr@498 209 reference.features = features;
mas01cr@509 210 if(adb->header->flags & ADB_HEADER_FLAG_POWER) {
mas01cr@509 211 lseek(adb->fd, adb->header->powerTableOffset + track_id * ADB_FILETABLE_ENTRY_SIZE, SEEK_SET);
mas01cr@509 212 read_or_goto_error(adb->fd, power, ADB_MAXSTR);
mas01cr@498 213 reference.power = power;
mas01cr@498 214 }
mas01cr@509 215 if(adb->header->flags & ADB_HEADER_FLAG_TIMES) {
mas01cr@509 216 lseek(adb->fd, adb->header->timesTableOffset + track_id * ADB_FILETABLE_ENTRY_SIZE, SEEK_SET);
mas01cr@509 217 read_or_goto_error(adb->fd, times, ADB_MAXSTR);
mas01cr@498 218 reference.times = times;
mas01cr@498 219 }
mas01cr@498 220 return audiodb_insert_create_datum(&reference, d);
mas01cr@498 221 } else {
mas01cr@498 222 /* initialize from sources of data that we already have */
mas01cr@498 223 d->nvectors = (*adb->track_lengths)[track_id];
mas01cr@498 224 d->dim = adb->header->dim;
mas01cr@498 225 d->key = (*adb->keys)[track_id].c_str();
mas01cr@498 226 /* read out stuff from the database tables */
mas01cr@498 227 d->data = (double *) malloc(d->nvectors * d->dim * sizeof(double));
mas01cr@498 228 lseek(adb->fd, adb->header->dataOffset + track_offset, SEEK_SET);
mas01cr@498 229 read_or_goto_error(adb->fd, d->data, d->nvectors * d->dim * sizeof(double));
mas01cr@509 230 if(adb->header->flags & ADB_HEADER_FLAG_POWER) {
mas01cr@498 231 d->power = (double *) malloc(d->nvectors * sizeof(double));
mas01cr@498 232 lseek(adb->fd, adb->header->powerTableOffset + track_offset / d->dim, SEEK_SET);
mas01cr@498 233 read_or_goto_error(adb->fd, d->power, d->nvectors * sizeof(double));
mas01cr@498 234 }
mas01cr@509 235 if(adb->header->flags & ADB_HEADER_FLAG_TIMES) {
mas01cr@498 236 d->times = (double *) malloc(2 * d->nvectors * sizeof(double));
mas01cr@498 237 lseek(adb->fd, adb->header->timesTableOffset + track_offset / d->dim, SEEK_SET);
mas01cr@498 238 read_or_goto_error(adb->fd, d->times, 2 * d->nvectors * sizeof(double));
mas01cr@498 239 }
mas01cr@498 240 return 0;
mas01cr@498 241 }
mas01cr@498 242 error:
mas01cr@498 243 audiodb_free_datum(d);
mas01cr@498 244 return 1;
mas01cr@498 245 }
mas01mc@292 246
mas01cr@498 247 int audiodb_datum_qpointers(adb_datum_t *d, uint32_t sequence_length, double **vector_data, double **vector, adb_qpointers_internal_t *qpointers) {
mas01cr@498 248 uint32_t nvectors = d->nvectors;
mas01cr@498 249
mas01cr@498 250 qpointers->nvectors = nvectors;
mas01cr@498 251
mas01cr@498 252 size_t vector_size = nvectors * sizeof(double) * d->dim;
mas01cr@498 253 *vector_data = new double[vector_size];
mas01cr@498 254 memcpy(*vector_data, d->data, vector_size);
mas01cr@498 255
mas01cr@498 256 qpointers->l2norm_data = new double[vector_size / d->dim];
mas01cr@498 257 audiodb_l2norm_buffer(*vector_data, d->dim, nvectors, qpointers->l2norm_data);
mas01cr@498 258 audiodb_sequence_sum(qpointers->l2norm_data, nvectors, sequence_length);
mas01cr@498 259 audiodb_sequence_sqrt(qpointers->l2norm_data, nvectors, sequence_length);
mas01cr@498 260
mas01cr@498 261 if(d->power) {
mas01cr@498 262 qpointers->power_data = new double[vector_size / d->dim];
mas01cr@498 263 memcpy(qpointers->power_data, d->power, vector_size / d->dim);
mas01cr@498 264 audiodb_sequence_sum(qpointers->power_data, nvectors, sequence_length);
mas01cr@498 265 audiodb_sequence_average(qpointers->power_data, nvectors, sequence_length);
mas01cr@239 266 }
mas01cr@239 267
mas01cr@498 268 if(d->times) {
mas01cr@498 269 qpointers->mean_duration = new double[1];
mas01cr@498 270 *qpointers->mean_duration = 0;
mas01cr@498 271 for(unsigned int k = 0; k < nvectors; k++) {
mas01cr@498 272 *qpointers->mean_duration += d->times[2*k+1] - d->times[2*k];
mas01cr@239 273 }
mas01cr@498 274 *qpointers->mean_duration /= nvectors;
mas01cr@239 275 }
mas01cr@239 276
mas01cr@498 277 *vector = *vector_data;
mas01cr@498 278 qpointers->l2norm = qpointers->l2norm_data;
mas01cr@498 279 qpointers->power = qpointers->power_data;
mas01cr@498 280 return 0;
mas01cr@498 281 }
mas01cr@498 282
mas01mc@528 283 int audiodb_datum_qpointers_partial(adb_datum_t *d, uint32_t sequence_length, double **vector_data,
mas01mc@528 284 double **vector, adb_qpointers_internal_t *qpointers,
mas01mc@528 285 adb_qstate_internal_t *qstate){
mas01mc@528 286 uint32_t nvectors = d->nvectors;
mas01mc@528 287 qpointers->nvectors = nvectors;
mas01mc@528 288 std::priority_queue<PointPair> ppairs(*qstate->exact_evaluation_queue);
mas01mc@528 289
mas01mc@528 290 size_t vector_size = nvectors * sizeof(double) * d->dim;
mas01mc@528 291 *vector_data = new double[vector_size];
mas01mc@528 292 qpointers->l2norm_data = new double[vector_size / d->dim];
mas01mc@528 293 if(d->power)
mas01mc@528 294 qpointers->power_data = new double[vector_size / d->dim];
mas01mc@528 295
mas01mc@529 296 uint32_t seq_len_dim_dbl = sequence_length*d->dim*sizeof(double);
mas01mc@529 297 uint32_t seq_len_dbl = sequence_length*sizeof(double);
mas01mc@528 298 PointPair pp = ppairs.top();
mas01mc@528 299 uint32_t tid = pp.trackID;
mas01mc@528 300
mas01mc@528 301 while( !ppairs.empty() && pp.trackID==tid){
mas01mc@528 302 uint32_t spos = pp.spos;
mas01mc@528 303 uint32_t spos_dim = spos*d->dim;
mas01mc@529 304 #ifdef _LSH_DEBUG_
mas01mc@529 305 cout << "tid=" << pp.trackID << " qpos=" << pp.qpos << " spos=" << pp.spos << endl;
mas01mc@529 306 cout.flush();
mas01mc@529 307 #endif
mas01mc@529 308 memcpy((void*)(*vector_data+spos_dim), (void*)(d->data+spos_dim), seq_len_dim_dbl);
mas01mc@528 309
mas01mc@529 310 audiodb_l2norm_buffer(*vector_data+spos_dim, d->dim, sequence_length, qpointers->l2norm_data+spos);
mas01mc@528 311 audiodb_sequence_sum(qpointers->l2norm_data+spos, sequence_length, sequence_length);
mas01mc@528 312 audiodb_sequence_sqrt(qpointers->l2norm_data+spos, sequence_length, sequence_length);
mas01mc@528 313
mas01mc@528 314 if(d->power) {
mas01mc@528 315 memcpy(qpointers->power_data+spos, d->power+spos, seq_len_dbl);
mas01mc@528 316 audiodb_sequence_sum(qpointers->power_data+spos, sequence_length, sequence_length);
mas01mc@528 317 audiodb_sequence_average(qpointers->power_data+spos, sequence_length, sequence_length);
mas01mc@528 318 }
mas01mc@528 319 ppairs.pop();
mas01mc@528 320 if(!ppairs.empty())
mas01mc@528 321 pp = ppairs.top();
mas01mc@528 322 }
mas01mc@528 323
mas01mc@528 324 if(d->times) {
mas01mc@528 325 qpointers->mean_duration = new double[1];
mas01mc@528 326 *qpointers->mean_duration = 0;
mas01mc@528 327 for(unsigned int k = 0; k < nvectors; k++) {
mas01mc@528 328 *qpointers->mean_duration += d->times[2*k+1] - d->times[2*k];
mas01mc@528 329 }
mas01mc@528 330 *qpointers->mean_duration /= nvectors;
mas01mc@528 331 }
mas01mc@528 332
mas01mc@528 333 *vector = *vector_data;
mas01mc@528 334 qpointers->l2norm = qpointers->l2norm_data;
mas01mc@528 335 qpointers->power = qpointers->power_data;
mas01mc@528 336 return 0;
mas01mc@528 337 }
mas01mc@528 338
mas01cr@498 339 int audiodb_query_spec_qpointers(adb_t *adb, const adb_query_spec_t *spec, double **vector_data, double **vector, adb_qpointers_internal_t *qpointers) {
mas01cr@498 340 adb_datum_t *datum;
mas01cr@498 341 adb_datum_t d = {0};
mas01cr@498 342 uint32_t sequence_length;
mas01cr@498 343 uint32_t sequence_start;
mas01cr@498 344
mas01cr@498 345 datum = spec->qid.datum;
mas01cr@498 346 sequence_length = spec->qid.sequence_length;
mas01cr@498 347 sequence_start = spec->qid.sequence_start;
mas01cr@498 348
mas01cr@498 349 if(datum->data) {
mas01cr@498 350 if(datum->dim != adb->header->dim) {
mas01cr@498 351 return 1;
mas01cr@239 352 }
mas01cr@498 353 /* initialize d, and mark that nothing needs freeing later. */
mas01cr@498 354 d = *datum;
mas01cr@498 355 datum = &d;
mas01cr@498 356 } else if (datum->key) {
mas01cr@498 357 uint32_t track_id;
mas01cr@498 358 if((track_id = audiodb_key_index(adb, datum->key)) == (uint32_t) -1) {
mas01cr@498 359 return 1;
mas01cr@498 360 }
mas01cr@498 361 audiodb_track_id_datum(adb, track_id, &d);
mas01cr@498 362 } else {
mas01cr@498 363 return 1;
mas01cr@239 364 }
mas01cr@239 365
mas01cr@498 366 /* FIXME: check the overflow logic here */
mas01cr@498 367 if(sequence_start + sequence_length > d.nvectors) {
mas01cr@498 368 if(datum != &d) {
mas01cr@498 369 audiodb_free_datum(&d);
mas01cr@498 370 }
mas01cr@498 371 return 1;
mas01cr@498 372 }
mas01cr@239 373
mas01cr@498 374 audiodb_datum_qpointers(&d, sequence_length, vector_data, vector, qpointers);
mas01cr@498 375
mas01cr@498 376 /* Finally, if applicable, set up the moving qpointers. */
mas01cr@498 377 if(spec->qid.flags & ADB_QID_FLAG_EXHAUSTIVE) {
mas01cr@498 378 /* the qpointers are already at the start, and so correct. */
mas01cr@498 379 } else {
mas01cr@498 380 /* adjust the qpointers to point to the correct place in the sequence */
mas01cr@498 381 *vector = *vector_data + spec->qid.sequence_start * d.dim;
mas01cr@498 382 qpointers->l2norm = qpointers->l2norm_data + spec->qid.sequence_start;
mas01cr@498 383 if(d.power) {
mas01cr@498 384 qpointers->power = qpointers->power_data + spec->qid.sequence_start;
mas01cr@239 385 }
mas01cr@498 386 qpointers->nvectors = sequence_length;
mas01cr@239 387 }
mas01cr@498 388
mas01cr@498 389 /* Clean up: free any bits of datum that we have ourselves
mas01cr@498 390 * allocated. */
mas01cr@498 391 if(datum != &d) {
mas01cr@498 392 audiodb_free_datum(&d);
mas01cr@498 393 }
mas01cr@498 394
mas01cr@498 395 return 0;
mas01cr@239 396 }
mas01cr@239 397
mas01cr@498 398 static int audiodb_set_up_dbpointers(adb_t *adb, const adb_query_spec_t *spec, adb_qpointers_internal_t *dbpointers) {
mas01cr@498 399 uint32_t nvectors = adb->header->length / (adb->header->dim * sizeof(double));
mas01cr@498 400 uint32_t sequence_length = spec->qid.sequence_length;
mas01mc@292 401
mas01cr@498 402 bool using_power = spec->refine.flags & (ADB_REFINE_ABSOLUTE_THRESHOLD|ADB_REFINE_RELATIVE_THRESHOLD);
mas01cr@498 403 bool using_times = spec->refine.flags & ADB_REFINE_DURATION_RATIO;
mas01cr@498 404 double *times_table = NULL;
mas01cr@498 405
mas01cr@498 406
mas01cr@498 407 dbpointers->nvectors = nvectors;
mas01cr@498 408 dbpointers->l2norm_data = new double[nvectors];
mas01cr@498 409
mas01cr@498 410 double *snpp = dbpointers->l2norm_data, *sppp = 0;
mas01cr@498 411 lseek(adb->fd, adb->header->l2normTableOffset, SEEK_SET);
mas01cr@498 412 read_or_goto_error(adb->fd, dbpointers->l2norm_data, nvectors * sizeof(double));
mas01cr@498 413
mas01cr@498 414 if (using_power) {
mas01cr@509 415 if (!(adb->header->flags & ADB_HEADER_FLAG_POWER)) {
mas01cr@498 416 goto error;
mas01cr@498 417 }
mas01cr@498 418 dbpointers->power_data = new double[nvectors];
mas01cr@498 419 sppp = dbpointers->power_data;
mas01cr@498 420 lseek(adb->fd, adb->header->powerTableOffset, SEEK_SET);
mas01cr@498 421 read_or_goto_error(adb->fd, dbpointers->power_data, nvectors * sizeof(double));
mas01mc@292 422 }
mas01mc@292 423
mas01cr@498 424 for(unsigned int i = 0; i < adb->header->numFiles; i++){
mas01cr@498 425 size_t track_length = (*adb->track_lengths)[i];
mas01cr@498 426 if(track_length >= sequence_length) {
mas01cr@498 427 audiodb_sequence_sum(snpp, track_length, sequence_length);
mas01cr@498 428 audiodb_sequence_sqrt(snpp, track_length, sequence_length);
mas01cr@498 429 if (using_power) {
mas01cr@498 430 audiodb_sequence_sum(sppp, track_length, sequence_length);
mas01cr@498 431 audiodb_sequence_average(sppp, track_length, sequence_length);
mas01cr@498 432 }
mas01mc@324 433 }
mas01cr@498 434 snpp += track_length;
mas01cr@498 435 if (using_power) {
mas01cr@498 436 sppp += track_length;
mas01mc@324 437 }
mas01mc@292 438 }
mas01mc@292 439
mas01cr@498 440 if (using_times) {
mas01cr@509 441 if(!(adb->header->flags & ADB_HEADER_FLAG_TIMES)) {
mas01cr@498 442 goto error;
mas01cr@498 443 }
mas01mc@292 444
mas01cr@498 445 dbpointers->mean_duration = new double[adb->header->numFiles];
mas01cr@498 446
mas01cr@498 447 times_table = (double *) malloc(2 * nvectors * sizeof(double));
mas01cr@498 448 if(!times_table) {
mas01cr@498 449 goto error;
mas01cr@498 450 }
mas01cr@498 451 lseek(adb->fd, adb->header->timesTableOffset, SEEK_SET);
mas01cr@498 452 read_or_goto_error(adb->fd, times_table, 2 * nvectors * sizeof(double));
mas01cr@498 453 for(unsigned int k = 0; k < adb->header->numFiles; k++) {
mas01cr@498 454 size_t track_length = (*adb->track_lengths)[k];
mas01cr@498 455 unsigned int j;
mas01cr@498 456 dbpointers->mean_duration[k] = 0.0;
mas01cr@498 457 for(j = 0; j < track_length; j++) {
mas01cr@498 458 dbpointers->mean_duration[k] += times_table[2*j+1] - times_table[2*j];
mas01mc@292 459 }
mas01cr@498 460 dbpointers->mean_duration[k] /= j;
mas01mc@292 461 }
mas01cr@498 462
mas01cr@498 463 free(times_table);
mas01cr@498 464 times_table = NULL;
mas01mc@292 465 }
mas01cr@498 466
mas01cr@498 467 dbpointers->l2norm = dbpointers->l2norm_data;
mas01cr@498 468 dbpointers->power = dbpointers->power_data;
mas01cr@498 469 return 0;
mas01cr@498 470
mas01cr@498 471 error:
mas01cr@498 472 if(dbpointers->l2norm_data) {
mas01cr@498 473 delete [] dbpointers->l2norm_data;
mas01cr@498 474 }
mas01cr@498 475 if(dbpointers->power_data) {
mas01cr@498 476 delete [] dbpointers->power_data;
mas01cr@498 477 }
mas01cr@498 478 if(dbpointers->mean_duration) {
mas01cr@498 479 delete [] dbpointers->mean_duration;
mas01cr@498 480 }
mas01cr@498 481 if(times_table) {
mas01cr@498 482 free(times_table);
mas01cr@498 483 }
mas01cr@498 484 return 1;
mas01cr@498 485
mas01mc@292 486 }
mas01mc@292 487
mas01cr@498 488 int audiodb_query_queue_loop(adb_t *adb, const adb_query_spec_t *spec, adb_qstate_internal_t *qstate, double *query, adb_qpointers_internal_t *qpointers) {
mas01cr@498 489 adb_qpointers_internal_t dbpointers = {0};
mas01mc@292 490
mas01cr@498 491 uint32_t sequence_length = spec->qid.sequence_length;
mas01cr@498 492 bool power_refine = spec->refine.flags & (ADB_REFINE_ABSOLUTE_THRESHOLD|ADB_REFINE_RELATIVE_THRESHOLD);
mas01cr@239 493
mas01cr@498 494 if(qstate->exact_evaluation_queue->size() == 0) {
mas01cr@498 495 return 0;
mas01cr@239 496 }
mas01cr@239 497
mas01cr@498 498 /* We are guaranteed that the order of points is sorted by:
mas01cr@498 499 * {trackID, spos, qpos} so we can be relatively efficient in
mas01cr@498 500 * initialization of track data. We assume that points usually
mas01cr@498 501 * don't overlap, so we will use exhaustive dot product evaluation
mas01cr@498 502 * (instead of memoization of partial sums, as in query_loop()).
mas01cr@498 503 */
mas01cr@498 504 double dist;
mas01cr@498 505 double *dbdata = 0, *dbdata_pointer;
mas01cr@498 506 Uns32T currentTrack = 0x80000000; // KLUDGE: Initialize with a value outside of track index range
mas01cr@498 507 Uns32T npairs = qstate->exact_evaluation_queue->size();
mas01mc@527 508 #ifdef _LSH_DEBUG_
mas01mc@527 509 cout << "Num vector pairs to evaluate: " << npairs << "..." << endl;
mas01mc@527 510 cout.flush();
mas01mc@527 511 #endif
mas01cr@498 512 while(npairs--) {
mas01cr@498 513 PointPair pp = qstate->exact_evaluation_queue->top();
mas01cr@498 514 if(currentTrack != pp.trackID) {
mas01cr@509 515 maybe_delete_array(dbdata);
mas01cr@509 516 maybe_delete_array(dbpointers.l2norm_data);
mas01cr@509 517 maybe_delete_array(dbpointers.power_data);
mas01cr@509 518 maybe_delete_array(dbpointers.mean_duration);
mas01cr@498 519 currentTrack = pp.trackID;
mas01cr@498 520 adb_datum_t d = {0};
mas01cr@498 521 if(audiodb_track_id_datum(adb, pp.trackID, &d)) {
mas01cr@498 522 delete qstate->exact_evaluation_queue;
mas01mc@529 523 delete qstate->set;
mas01cr@498 524 return 1;
mas01cr@498 525 }
mas01mc@529 526 // if(audiodb_datum_qpointers_partial(&d, sequence_length, &dbdata, &dbdata_pointer, &dbpointers, qstate)) {
mas01mc@529 527 if(audiodb_datum_qpointers(&d, sequence_length, &dbdata, &dbdata_pointer, &dbpointers)) {
mas01cr@498 528 delete qstate->exact_evaluation_queue;
mas01mc@529 529 delete qstate->set;
mas01cr@498 530 audiodb_free_datum(&d);
mas01cr@498 531 return 1;
mas01cr@498 532 }
mas01cr@498 533 audiodb_free_datum(&d);
mas01cr@498 534 }
mas01cr@498 535 Uns32T qPos = (spec->qid.flags & ADB_QID_FLAG_EXHAUSTIVE) ? pp.qpos : 0;
mas01cr@498 536 Uns32T sPos = pp.spos; // index into l2norm table
mas01cr@498 537 // Test power thresholds before computing distance
mas01cr@498 538 if( ( (!power_refine) || audiodb_powers_acceptable(&spec->refine, qpointers->power[qPos], dbpointers.power[sPos])) &&
mas01cr@498 539 ( qPos<qpointers->nvectors-sequence_length+1 && sPos<(*adb->track_lengths)[pp.trackID]-sequence_length+1 ) ){
mas01cr@498 540 // Compute distance
mas01cr@498 541 dist = audiodb_dot_product(query + qPos*adb->header->dim, dbdata + sPos*adb->header->dim, adb->header->dim*sequence_length);
mas01cr@498 542 double qn = qpointers->l2norm[qPos];
mas01cr@498 543 double sn = dbpointers.l2norm[sPos];
mas01cr@498 544 switch(spec->params.distance) {
mas01cr@498 545 case ADB_DISTANCE_EUCLIDEAN_NORMED:
mas01cr@498 546 dist = 2 - (2/(qn*sn))*dist;
mas01cr@498 547 break;
mas01cr@498 548 case ADB_DISTANCE_EUCLIDEAN:
mas01cr@498 549 dist = qn*qn + sn*sn - 2*dist;
mas01cr@498 550 break;
mas01cr@498 551 }
mas01cr@498 552 if((!(spec->refine.flags & ADB_REFINE_RADIUS)) ||
mas01cr@509 553 dist <= (spec->refine.radius + ADB_DISTANCE_TOLERANCE)) {
mas01cr@498 554 adb_result_t r;
mas01cr@498 555 r.key = (*adb->keys)[pp.trackID].c_str();
mas01cr@498 556 r.dist = dist;
mas01cr@498 557 r.qpos = pp.qpos;
mas01cr@498 558 r.ipos = pp.spos;
mas01cr@498 559 qstate->accumulator->add_point(&r);
mas01cr@239 560 }
mas01cr@239 561 }
mas01cr@498 562 qstate->exact_evaluation_queue->pop();
mas01mc@292 563 }
mas01mc@474 564
mas01mc@315 565 // Cleanup
mas01cr@509 566 maybe_delete_array(dbdata);
mas01cr@509 567 maybe_delete_array(dbpointers.l2norm_data);
mas01cr@509 568 maybe_delete_array(dbpointers.power_data);
mas01cr@509 569 maybe_delete_array(dbpointers.mean_duration);
mas01cr@498 570 delete qstate->exact_evaluation_queue;
mas01mc@529 571 delete qstate->set;
mas01cr@498 572 return 0;
mas01mc@292 573 }
mas01mc@292 574
mas01cr@498 575 int audiodb_query_loop(adb_t *adb, const adb_query_spec_t *spec, adb_qstate_internal_t *qstate) {
mas01cr@498 576
mas01cr@498 577 double *query, *query_data;
mas01cr@498 578 adb_qpointers_internal_t qpointers = {0}, dbpointers = {0};
mas01mc@292 579
mas01cr@498 580 bool power_refine = spec->refine.flags & (ADB_REFINE_ABSOLUTE_THRESHOLD|ADB_REFINE_RELATIVE_THRESHOLD);
mas01cr@239 581
mas01cr@509 582 if(adb->header->flags & ADB_HEADER_FLAG_REFERENCES) {
mas01cr@498 583 /* FIXME: actually it would be nice to support this mode of
mas01cr@498 584 * operation, but for now... */
mas01cr@498 585 return 1;
mas01cr@498 586 }
mas01mc@324 587
mas01cr@498 588 if(audiodb_query_spec_qpointers(adb, spec, &query_data, &query, &qpointers)) {
mas01cr@498 589 return 1;
mas01cr@498 590 }
mas01cr@239 591
mas01cr@498 592 if(audiodb_set_up_dbpointers(adb, spec, &dbpointers)) {
mas01cr@498 593 return 1;
mas01cr@498 594 }
mas01cr@239 595
mas01cr@498 596 unsigned j,k,track,trackOffset=0, HOP_SIZE = spec->refine.hopsize;
mas01cr@498 597 unsigned wL = spec->qid.sequence_length;
mas01cr@239 598 double **D = 0; // Differences query and target
mas01cr@239 599 double **DD = 0; // Matched filter distance
mas01cr@239 600
mas01cr@498 601 D = new double*[qpointers.nvectors]; // pre-allocate
mas01cr@498 602 DD = new double*[qpointers.nvectors];
mas01cr@239 603
mas01cr@239 604 off_t trackIndexOffset;
mas01cr@239 605
mas01cr@239 606 // Track loop
mas01cr@239 607 size_t data_buffer_size = 0;
mas01cr@239 608 double *data_buffer = 0;
mas01cr@498 609 lseek(adb->fd, adb->header->dataOffset, SEEK_SET);
mas01cr@239 610
mas01cr@498 611 std::set<std::string>::iterator keys_end = qstate->allowed_keys->end();
mas01cr@498 612 for(track = 0; track < adb->header->numFiles; track++) {
mas01cr@498 613 unsigned t = track;
mas01cr@498 614
mas01cr@498 615 while (qstate->allowed_keys->find((*adb->keys)[track]) == keys_end) {
mas01cr@498 616 track++;
mas01cr@498 617 if(track == adb->header->numFiles) {
mas01cr@498 618 goto loop_finish;
mas01cr@239 619 }
mas01cr@239 620 }
mas01cr@498 621 trackOffset = (*adb->track_offsets)[track];
mas01cr@498 622 if(track != t) {
mas01cr@498 623 lseek(adb->fd, adb->header->dataOffset + trackOffset, SEEK_SET);
mas01cr@498 624 }
mas01cr@498 625 trackIndexOffset = trackOffset / (adb->header->dim * sizeof(double)); // dbpointers.nvectors offset
mas01cr@239 626
mas01cr@498 627 if(audiodb_read_data(adb, adb->fd, track, &data_buffer, &data_buffer_size)) {
mas01cr@498 628 return 1;
mas01mc@292 629 }
mas01cr@498 630 if(wL <= (*adb->track_lengths)[track]) { // test for short sequences
mas01cr@498 631
mas01cr@498 632 audiodb_initialize_arrays(adb, spec, track, qpointers.nvectors, query, data_buffer, D, DD);
mas01mc@292 633
mas01cr@498 634 if((!(spec->refine.flags & ADB_REFINE_DURATION_RATIO)) ||
mas01cr@498 635 fabs(dbpointers.mean_duration[track]-qpointers.mean_duration[0]) < qpointers.mean_duration[0]*spec->refine.duration_ratio) {
mas01cr@239 636
mas01cr@239 637 // Search for minimum distance by shingles (concatenated vectors)
mas01cr@498 638 for(j = 0; j <= qpointers.nvectors - wL; j += HOP_SIZE) {
mas01cr@498 639 for(k = 0; k <= (*adb->track_lengths)[track] - wL; k += HOP_SIZE) {
mas01cr@498 640 double thisDist = 0;
mas01cr@498 641 double qn = qpointers.l2norm[j];
mas01cr@498 642 double sn = dbpointers.l2norm[trackIndexOffset + k];
mas01cr@498 643 switch(spec->params.distance) {
mas01cr@498 644 case ADB_DISTANCE_EUCLIDEAN_NORMED:
mas01cr@498 645 thisDist = 2-(2/(qn*sn))*DD[j][k];
mas01cr@498 646 break;
mas01cr@498 647 case ADB_DISTANCE_EUCLIDEAN:
mas01cr@498 648 thisDist = qn*qn + sn*sn - 2*DD[j][k];
mas01cr@498 649 break;
mas01cr@498 650 case ADB_DISTANCE_DOT_PRODUCT:
mas01cr@498 651 thisDist = DD[j][k];
mas01cr@498 652 break;
mas01cr@498 653 }
mas01cr@239 654 // Power test
mas01cr@498 655 if ((!power_refine) || audiodb_powers_acceptable(&spec->refine, qpointers.power[j], dbpointers.power[trackIndexOffset + k])) {
mas01cr@239 656 // radius test
mas01cr@498 657 if((!(spec->refine.flags & ADB_REFINE_RADIUS)) ||
mas01cr@509 658 thisDist <= (spec->refine.radius + ADB_DISTANCE_TOLERANCE)) {
mas01cr@498 659 adb_result_t r;
mas01cr@498 660 r.key = (*adb->keys)[track].c_str();
mas01cr@498 661 r.dist = thisDist;
mas01cr@498 662 if(spec->qid.flags & ADB_QID_FLAG_EXHAUSTIVE) {
mas01cr@498 663 r.qpos = j;
mas01cr@498 664 } else {
mas01cr@498 665 r.qpos = spec->qid.sequence_start;
mas01cr@498 666 }
mas01cr@498 667 r.ipos = k;
mas01cr@498 668 qstate->accumulator->add_point(&r);
mas01cr@239 669 }
mas01cr@239 670 }
mas01cr@239 671 }
mas01cr@239 672 }
mas01cr@239 673 } // Duration match
mas01cr@498 674 audiodb_delete_arrays(track, qpointers.nvectors, D, DD);
mas01cr@239 675 }
mas01cr@239 676 }
mas01cr@239 677
mas01cr@498 678 loop_finish:
mas01cr@498 679
mas01cr@239 680 free(data_buffer);
mas01cr@239 681
mas01cr@239 682 // Clean up
mas01cr@239 683 if(query_data)
mas01cr@239 684 delete[] query_data;
mas01cr@498 685 if(qpointers.l2norm_data)
mas01cr@498 686 delete[] qpointers.l2norm_data;
mas01cr@498 687 if(qpointers.power_data)
mas01cr@498 688 delete[] qpointers.power_data;
mas01cr@498 689 if(qpointers.mean_duration)
mas01cr@498 690 delete[] qpointers.mean_duration;
mas01cr@498 691 if(dbpointers.power_data)
mas01cr@498 692 delete[] dbpointers.power_data;
mas01cr@498 693 if(dbpointers.l2norm_data)
mas01cr@498 694 delete[] dbpointers.l2norm_data;
mas01cr@239 695 if(D)
mas01cr@239 696 delete[] D;
mas01cr@239 697 if(DD)
mas01cr@239 698 delete[] DD;
mas01cr@498 699 if(dbpointers.mean_duration)
mas01cr@498 700 delete[] dbpointers.mean_duration;
mas01cr@498 701
mas01cr@498 702 return 0;
mas01cr@239 703 }