diff armadillo-3.900.4/include/armadillo_bits/op_var_meat.hpp @ 49:1ec0e2823891

Switch to using subrepo copies of qm-dsp, nnls-chroma, vamp-plugin-sdk; update Armadillo version; assume build without external BLAS/LAPACK

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/armadillo-3.900.4/include/armadillo_bits/op_var_meat.hpp	Thu Jun 13 10:25:24 2013 +0100
@@ -0,0 +1,302 @@
+// Copyright (C) 2009-2012 NICTA (www.nicta.com.au)
+// Copyright (C) 2009-2012 Conrad Sanderson
+// 
+// This Source Code Form is subject to the terms of the Mozilla Public
+// License, v. 2.0. If a copy of the MPL was not distributed with this
+// file, You can obtain one at http://mozilla.org/MPL/2.0/.
+
+
+//! \addtogroup op_var
+//! @{
+
+
+//! \brief
+//! For each row or for each column, find the variance.
+//! The result is stored in a dense matrix that has either one column or one row.
+//! The dimension, for which the variances are found, is set via the var() function.
+template<typename T1>
+inline
+void
+op_var::apply(Mat<typename T1::pod_type>& out, const mtOp<typename T1::pod_type, T1, op_var>& in)
+  {
+  arma_extra_debug_sigprint();
+  
+  typedef typename T1::elem_type  in_eT;
+  typedef typename T1::pod_type  out_eT;
+  
+  const unwrap_check_mixed<T1> tmp(in.m, out);
+  const Mat<in_eT>&        X = tmp.M;
+  
+  const uword norm_type = in.aux_uword_a;
+  const uword dim       = in.aux_uword_b;
+  
+  arma_debug_check( (norm_type > 1), "var(): incorrect usage. norm_type must be 0 or 1");
+  arma_debug_check( (dim > 1),       "var(): incorrect usage. dim must be 0 or 1"      );
+  
+  const uword X_n_rows = X.n_rows;
+  const uword X_n_cols = X.n_cols;
+  
+  if(dim == 0)
+    {
+    arma_extra_debug_print("op_var::apply(), dim = 0");
+    
+    arma_debug_check( (X_n_rows == 0), "var(): given object has zero rows" );
+    
+    out.set_size(1, X_n_cols);
+    
+    out_eT* out_mem = out.memptr();
+    
+    for(uword col=0; col<X_n_cols; ++col)
+      {
+      out_mem[col] = op_var::direct_var( X.colptr(col), X_n_rows, norm_type );
+      }
+    }
+  else
+  if(dim == 1)
+    {
+    arma_extra_debug_print("op_var::apply(), dim = 1");
+    
+    arma_debug_check( (X_n_cols == 0), "var(): given object has zero columns" );
+    
+    out.set_size(X_n_rows, 1);
+    
+    podarray<in_eT> dat(X_n_cols);
+    
+    in_eT*  dat_mem = dat.memptr();
+    out_eT* out_mem = out.memptr();
+    
+    for(uword row=0; row<X_n_rows; ++row)
+      {
+      dat.copy_row(X, row);
+      
+      out_mem[row] = op_var::direct_var( dat_mem, X_n_cols, norm_type );
+      }
+    }
+  }
+
+
+
+template<typename T1>
+inline
+typename T1::pod_type
+op_var::var_vec(const Base<typename T1::elem_type, T1>& X, const uword norm_type)
+  {
+  arma_extra_debug_sigprint();
+  
+  typedef typename T1::elem_type eT;
+  
+  arma_debug_check( (norm_type > 1), "var(): incorrect usage. norm_type must be 0 or 1");
+  
+  const Proxy<T1> P(X.get_ref());
+  
+  const podarray<eT> tmp(P);
+  
+  return op_var::direct_var(tmp.memptr(), tmp.n_elem, norm_type);
+  }
+
+
+
+template<typename eT>
+inline
+typename get_pod_type<eT>::result
+op_var::var_vec(const subview_col<eT>& X, const uword norm_type)
+  {
+  arma_extra_debug_sigprint();
+  
+  arma_debug_check( (norm_type > 1), "var(): incorrect usage. norm_type must be 0 or 1");
+  
+  return op_var::direct_var(X.colptr(0), X.n_rows, norm_type);
+  }
+
+
+
+
+template<typename eT>
+inline
+typename get_pod_type<eT>::result
+op_var::var_vec(const subview_row<eT>& X, const uword norm_type)
+  {
+  arma_extra_debug_sigprint();
+  
+  arma_debug_check( (norm_type > 1), "var(): incorrect usage. norm_type must be 0 or 1");
+  
+  const Mat<eT>& A = X.m;
+  
+  const uword start_row = X.aux_row1;
+  const uword start_col = X.aux_col1;
+  
+  const uword end_col_p1 = start_col + X.n_cols;
+  
+  podarray<eT> tmp(X.n_elem);
+  eT* tmp_mem = tmp.memptr();
+  
+  for(uword i=0, col=start_col; col < end_col_p1; ++col, ++i)
+    {
+    tmp_mem[i] = A.at(start_row, col);
+    }
+  
+  return op_var::direct_var(tmp.memptr(), tmp.n_elem, norm_type);
+  }
+
+
+
+//! find the variance of an array
+template<typename eT>
+inline
+eT
+op_var::direct_var(const eT* const X, const uword n_elem, const uword norm_type)
+  {
+  arma_extra_debug_sigprint();
+  
+  if(n_elem >= 2)
+    {
+    const eT acc1 = op_mean::direct_mean(X, n_elem);
+    
+    eT acc2 = eT(0);
+    eT acc3 = eT(0);
+    
+    uword i,j;
+    
+    for(i=0, j=1; j<n_elem; i+=2, j+=2)
+      {
+      const eT Xi = X[i];
+      const eT Xj = X[j];
+      
+      const eT tmpi = acc1 - Xi;
+      const eT tmpj = acc1 - Xj;
+      
+      acc2 += tmpi*tmpi + tmpj*tmpj;
+      acc3 += tmpi      + tmpj;
+      }
+    
+    if(i < n_elem)
+      {
+      const eT Xi = X[i];
+      
+      const eT tmpi = acc1 - Xi;
+      
+      acc2 += tmpi*tmpi;
+      acc3 += tmpi;
+      }
+    
+    const eT norm_val = (norm_type == 0) ? eT(n_elem-1) : eT(n_elem);
+    const eT var_val  = (acc2 - acc3*acc3/eT(n_elem)) / norm_val;
+    
+    return arma_isfinite(var_val) ? var_val : op_var::direct_var_robust(X, n_elem, norm_type);
+    }
+  else
+    {
+    return eT(0);
+    }
+  }
+
+
+
+//! find the variance of an array (robust but slow)
+template<typename eT>
+inline
+eT
+op_var::direct_var_robust(const eT* const X, const uword n_elem, const uword norm_type)
+  {
+  arma_extra_debug_sigprint();
+  
+  if(n_elem > 1)
+    {
+    eT r_mean = X[0];
+    eT r_var  = eT(0);
+    
+    for(uword i=1; i<n_elem; ++i)
+      {
+      const eT tmp      = X[i] - r_mean;
+      const eT i_plus_1 = eT(i+1);
+      
+      r_var  = eT(i-1)/eT(i) * r_var + (tmp*tmp)/i_plus_1;
+      
+      r_mean = r_mean + tmp/i_plus_1;
+      }
+    
+    return (norm_type == 0) ? r_var : (eT(n_elem-1)/eT(n_elem)) * r_var;
+    }
+  else
+    {
+    return eT(0);
+    }
+  }
+
+
+
+//! find the variance of an array (version for complex numbers)
+template<typename T>
+inline
+T
+op_var::direct_var(const std::complex<T>* const X, const uword n_elem, const uword norm_type)
+  {
+  arma_extra_debug_sigprint();
+  
+  typedef typename std::complex<T> eT;
+  
+  if(n_elem >= 2)
+    {
+    const eT acc1 = op_mean::direct_mean(X, n_elem);
+    
+    T  acc2 =  T(0);
+    eT acc3 = eT(0);
+    
+    for(uword i=0; i<n_elem; ++i)
+      {
+      const eT tmp = acc1 - X[i];
+      
+      acc2 += std::norm(tmp);
+      acc3 += tmp;
+      }
+    
+    const T norm_val = (norm_type == 0) ? T(n_elem-1) : T(n_elem);
+    const T var_val  = (acc2 - std::norm(acc3)/T(n_elem)) / norm_val;
+    
+    return arma_isfinite(var_val) ? var_val : op_var::direct_var_robust(X, n_elem, norm_type);
+    }
+  else
+    {
+    return T(0);
+    }
+  }
+
+
+
+//! find the variance of an array (version for complex numbers) (robust but slow)
+template<typename T>
+inline
+T
+op_var::direct_var_robust(const std::complex<T>* const X, const uword n_elem, const uword norm_type)
+  {
+  arma_extra_debug_sigprint();
+  
+  typedef typename std::complex<T> eT;
+  
+  if(n_elem > 1)
+    {
+    eT r_mean = X[0];
+     T r_var  = T(0);
+    
+    for(uword i=1; i<n_elem; ++i)
+      {
+      const eT tmp      = X[i] - r_mean;
+      const  T i_plus_1 = T(i+1);
+      
+      r_var  = T(i-1)/T(i) * r_var + std::norm(tmp)/i_plus_1;
+      
+      r_mean = r_mean + tmp/i_plus_1;
+      }
+    
+    return (norm_type == 0) ? r_var : (T(n_elem-1)/T(n_elem)) * r_var;
+    }
+  else
+    {
+    return T(0);
+    }
+  }
+
+
+
+//! @}
+