annotate scripts/score_parser.py @ 1435:1b04a21a550a

Instructions update (WIP); removed basic instructions from README.
author Brecht De Man <b.deman@qmul.ac.uk>
date Fri, 18 Dec 2015 01:45:54 +0000
parents 8147e19de61b
children 8540d153caec
rev   line source
nickjillings@1400 1 #!/usr/bin/python
nickjillings@1400 2
nickjillings@1400 3 import xml.etree.ElementTree as ET
nickjillings@1400 4 import os
nickjillings@1400 5 import sys
nickjillings@1400 6 import csv
nickjillings@1400 7
nickjillings@1400 8 # COMMAND LINE ARGUMENTS
nickjillings@1400 9
nickjillings@1400 10 assert len(sys.argv)<3, "score_parser takes at most 1 command line argument\n"+\
nickjillings@1400 11 "Use: python score_parser.py [rating_folder_location]"
nickjillings@1400 12
nickjillings@1400 13 # XML results files location
nickjillings@1400 14 if len(sys.argv) == 1:
nickjillings@1400 15 folder_name = "../saves" # Looks in 'saves/' folder from 'scripts/' folder
nickjillings@1400 16 print "Use: python score_parser.py [rating_folder_location]"
nickjillings@1400 17 print "Using default path: " + folder_name
nickjillings@1400 18 elif len(sys.argv) == 2:
nickjillings@1400 19 folder_name = sys.argv[1] # First command line argument is folder
nickjillings@1400 20
nickjillings@1400 21 # check if folder_name exists
nickjillings@1400 22 if not os.path.exists(folder_name):
nickjillings@1400 23 #the file is not there
nickjillings@1400 24 print "Folder '"+folder_name+"' does not exist."
nickjillings@1400 25 sys.exit() # terminate script execution
nickjillings@1400 26 elif not os.access(os.path.dirname(folder_name), os.W_OK):
nickjillings@1400 27 #the file does exist but write privileges are not given
nickjillings@1400 28 print "No write privileges in folder '"+folder_name+"'."
nickjillings@1400 29
nickjillings@1400 30
nickjillings@1400 31 # CODE
nickjillings@1400 32
nickjillings@1400 33 # remember which files have been opened this time
nickjillings@1400 34 file_history = []
nickjillings@1400 35
nickjillings@1400 36 # get every XML file in folder
nickjillings@1400 37 for file in os.listdir(folder_name):
nickjillings@1400 38 if file.endswith(".xml"):
nickjillings@1400 39 tree = ET.parse(folder_name + '/' + file)
nickjillings@1400 40 root = tree.getroot()
nickjillings@1400 41
nickjillings@1400 42 # get subject ID from XML file
nickjillings@1400 43 subject_id = file[:-4] # file name (without extension) as subject ID
nickjillings@1400 44
nickjillings@1400 45 # get list of all pages this subject evaluated
nickjillings@1400 46 for audioholder in root.findall("./audioholder"): # iterate over pages
nickjillings@1400 47 page_name = audioholder.get('id') # get page name
nickjillings@1400 48
nickjillings@1400 49 if page_name is None: # ignore 'empty' audio_holders
nickjillings@1400 50 print "WARNING: " + file + " contains empty audio holder. (score_parser.py)"
nickjillings@1400 51 break
nickjillings@1400 52
nickjillings@1400 53 file_name = folder_name+'/ratings/'+page_name+'-ratings.csv' # score file name
nickjillings@1400 54
nickjillings@1400 55 # create folder 'ratings' if not yet created
nickjillings@1400 56 if not os.path.exists(folder_name + '/ratings'):
nickjillings@1400 57 os.makedirs(folder_name + '/ratings')
nickjillings@1400 58
nickjillings@1400 59 # header: fragment IDs in 'alphabetical' order
nickjillings@1400 60 # go to fragment column, or create new column if it doesn't exist yet
nickjillings@1400 61
nickjillings@1400 62 # get array of audio elements and number of audio elements
nickjillings@1400 63 audiolist = audioholder.findall("./audioelement")
nickjillings@1400 64 n_fragments = len(audiolist)
nickjillings@1400 65
nickjillings@1400 66 # get alphabetical array of fragment IDs from this subject's XML
nickjillings@1400 67 fragmentnamelist = [] # make empty list
nickjillings@1400 68 for audioelement in audiolist: # iterate over all audioelements
nickjillings@1400 69 fragmentnamelist.append(audioelement.get('id')) # add to list
nickjillings@1400 70
nickjillings@1400 71 # if file exists, get header and add 'new' fragments
nickjillings@1400 72 if os.path.isfile(file_name):
nickjillings@1400 73 with open(file_name, 'r') as readfile:
nickjillings@1400 74 filereader = csv.reader(readfile, delimiter=',')
nickjillings@1400 75 headerrow = filereader.next()
nickjillings@1400 76
nickjillings@1400 77 # If file hasn't been opened yet this time, remove all rows except header
nickjillings@1400 78 if file_name not in file_history:
nickjillings@1400 79 with open(file_name, 'w') as writefile:
nickjillings@1400 80 filewriter = csv.writer(writefile, delimiter=',')
nickjillings@1400 81 headerrow = sorted(headerrow)
nickjillings@1400 82 filewriter.writerow(headerrow)
nickjillings@1400 83 file_history.append(file_name)
nickjillings@1400 84
nickjillings@1400 85 # Which of the fragmentes are in fragmentnamelist but not in headerrow?
nickjillings@1400 86 newfragments = list(set(fragmentnamelist)-set(headerrow))
nickjillings@1400 87 newfragments = sorted(newfragments) # new fragments in alphabetical order
nickjillings@1400 88 # If not empty, read file and rewrite adding extra columns
nickjillings@1400 89 if newfragments: # if not empty
nickjillings@1400 90 with open('temp.csv', 'w') as writefile:
nickjillings@1400 91 filewriter = csv.writer(writefile, delimiter=',')
nickjillings@1400 92 filewriter.writerow(headerrow + newfragments) # write new header
nickjillings@1400 93 with open(file_name, 'r') as readfile:
nickjillings@1400 94 filereader = csv.reader(readfile, delimiter=',')
nickjillings@1400 95 filereader.next() # skip header
nickjillings@1400 96 for row in filereader: # rewrite row plus empty cells for every new fragment name
nickjillings@1400 97 filewriter.writerow(row + ['']*len(newfragments))
nickjillings@1400 98 os.rename('temp.csv', file_name) # replace old file with temp file
nickjillings@1400 99 headerrow = headerrow + newfragments
b@1435 100
nickjillings@1400 101 # if not, create file and make header
nickjillings@1400 102 else:
nickjillings@1400 103 headerrow = sorted(fragmentnamelist) # sort alphabetically
nickjillings@1400 104 headerrow.insert(0,'')
nickjillings@1400 105 fragmentnamelist = fragmentnamelist[1:] #HACKY FIX inserting in firstrow also affects fragmentnamelist
nickjillings@1400 106 with open(file_name, 'w') as writefile:
nickjillings@1400 107 filewriter = csv.writer(writefile, delimiter=',')
nickjillings@1400 108 filewriter.writerow(headerrow)
nickjillings@1400 109
nickjillings@1400 110 # open file to write for this page
nickjillings@1400 111 writefile = open(file_name, 'a')
nickjillings@1400 112 filewriter = csv.writer(writefile, delimiter=',')
nickjillings@1400 113
nickjillings@1400 114 # prepare row to be written for this subject for this page
nickjillings@1400 115 ratingrow = [subject_id]
nickjillings@1400 116
nickjillings@1400 117 # get scores related to fragment [id]
nickjillings@1400 118 for fragmentname in headerrow[1:]: # iterate over fragments in header (skip first empty column)
nickjillings@1400 119 elementvalue = audioholder.find("./audioelement/[@id='"
nickjillings@1400 120 + fragmentname
nickjillings@1400 121 + "']/value")
nickjillings@1400 122 if hasattr(elementvalue, 'text'): # if rating for this fragment exists
nickjillings@1400 123 ratingrow.append(elementvalue.text) # add to rating row
nickjillings@1400 124 else: # if this subject has not rated this fragment
nickjillings@1400 125 ratingrow.append('') # append empty cell
nickjillings@1400 126
nickjillings@1400 127 # write row: [subject ID, rating fragment ID 1, ..., rating fragment ID M]
nickjillings@1400 128 if any(ratingrow[1:]): # append to file if row non-empty (except subject name)
nickjillings@1400 129 filewriter.writerow(ratingrow)