annotate data/fileio/CSVFormat.cpp @ 1700:c1208b211d8c single-point

Ensure test fails rather than crashing if this reader doesn't get created
author Chris Cannam <cannam@all-day-breakfast.com>
date Fri, 03 May 2019 15:02:09 +0100
parents 9570ef94eaa3
children bde22957545e
rev   line source
Chris@392 1 /* -*- c-basic-offset: 4 indent-tabs-mode: nil -*- vi:set ts=8 sts=4 sw=4: */
Chris@392 2
Chris@392 3 /*
Chris@392 4 Sonic Visualiser
Chris@392 5 An audio file viewer and annotation editor.
Chris@392 6 Centre for Digital Music, Queen Mary, University of London.
Chris@392 7 This file copyright 2006 Chris Cannam.
Chris@392 8
Chris@392 9 This program is free software; you can redistribute it and/or
Chris@392 10 modify it under the terms of the GNU General Public License as
Chris@392 11 published by the Free Software Foundation; either version 2 of the
Chris@392 12 License, or (at your option) any later version. See the file
Chris@392 13 COPYING included with this distribution for more information.
Chris@392 14 */
Chris@392 15
Chris@392 16 #include "CSVFormat.h"
Chris@392 17
Chris@629 18 #include "base/StringBits.h"
Chris@629 19
Chris@392 20 #include <QFile>
Chris@392 21 #include <QString>
Chris@392 22 #include <QRegExp>
Chris@392 23 #include <QStringList>
Chris@392 24 #include <QTextStream>
Chris@392 25
Chris@392 26 #include <iostream>
Chris@392 27
Chris@1362 28 #include "base/Debug.h"
Chris@1362 29
Chris@629 30 CSVFormat::CSVFormat(QString path) :
Chris@629 31 m_separator(""),
Chris@392 32 m_sampleRate(44100),
Chris@392 33 m_windowSize(1024),
Chris@629 34 m_allowQuoting(true)
Chris@392 35 {
Chris@1524 36 (void)guessFormatFor(path);
Chris@629 37 }
Chris@629 38
Chris@1524 39 bool
Chris@629 40 CSVFormat::guessFormatFor(QString path)
Chris@629 41 {
Chris@629 42 m_modelType = TwoDimensionalModel;
Chris@629 43 m_timingType = ExplicitTiming;
Chris@629 44 m_timeUnits = TimeSeconds;
Chris@629 45
Chris@629 46 m_maxExampleCols = 0;
Chris@629 47 m_columnCount = 0;
Chris@629 48 m_variableColumnCount = false;
Chris@629 49
Chris@629 50 m_example.clear();
Chris@629 51 m_columnQualities.clear();
Chris@629 52 m_columnPurposes.clear();
Chris@629 53 m_prevValues.clear();
Chris@629 54
Chris@629 55 QFile file(path);
Chris@1524 56 if (!file.exists()) {
Chris@1524 57 SVCERR << "CSVFormat::guessFormatFor(" << path
Chris@1524 58 << "): File does not exist" << endl;
Chris@1524 59 return false;
Chris@1524 60 }
Chris@1524 61 if (!file.open(QIODevice::ReadOnly | QIODevice::Text)) {
Chris@1524 62 SVCERR << "CSVFormat::guessFormatFor(" << path
Chris@1524 63 << "): File could not be opened for reading" << endl;
Chris@1524 64 return false;
Chris@1524 65 }
Chris@1524 66 SVDEBUG << "CSVFormat::guessFormatFor(" << path << ")" << endl;
Chris@392 67
Chris@392 68 QTextStream in(&file);
Chris@392 69 in.seek(0);
Chris@392 70
Chris@629 71 int lineno = 0;
Chris@392 72
Chris@392 73 while (!in.atEnd()) {
Chris@392 74
Chris@392 75 // See comment about line endings in CSVFileReader::load()
Chris@392 76
Chris@392 77 QString chunk = in.readLine();
Chris@392 78 QStringList lines = chunk.split('\r', QString::SkipEmptyParts);
Chris@392 79
Chris@897 80 for (int li = 0; li < lines.size(); ++li) {
Chris@392 81
Chris@392 82 QString line = lines[li];
Chris@1512 83 if (line.startsWith("#") || line == "") {
Chris@1512 84 continue;
Chris@1512 85 }
Chris@392 86
Chris@629 87 guessQualities(line, lineno);
Chris@392 88
Chris@840 89 ++lineno;
Chris@629 90 }
Chris@840 91
Chris@1512 92 if (lineno >= 150) break;
Chris@629 93 }
Chris@392 94
Chris@629 95 guessPurposes();
Chris@1515 96 guessAudioSampleRange();
Chris@1524 97
Chris@1524 98 return true;
Chris@629 99 }
Chris@629 100
Chris@629 101 void
Chris@629 102 CSVFormat::guessSeparator(QString line)
Chris@629 103 {
Chris@1524 104 QString candidates = "\t|,/: ";
Chris@1524 105
Chris@1524 106 for (int i = 0; i < candidates.length(); ++i) {
Chris@1524 107 auto bits = StringBits::split(line, candidates[i], m_allowQuoting);
Chris@1524 108 if (bits.size() >= 2) {
Chris@1585 109 m_plausibleSeparators.insert(candidates[i]);
Chris@1585 110 if (m_separator == "") {
Chris@1585 111 m_separator = candidates[i];
Chris@1585 112 SVDEBUG << "Estimated column separator: '" << m_separator
Chris@1585 113 << "'" << endl;
Chris@1524 114 }
Chris@629 115 }
Chris@629 116 }
Chris@629 117 }
Chris@629 118
Chris@629 119 void
Chris@629 120 CSVFormat::guessQualities(QString line, int lineno)
Chris@629 121 {
Chris@1585 122 guessSeparator(line);
Chris@629 123
Chris@1362 124 QStringList list = StringBits::split(line, getSeparator(), m_allowQuoting);
Chris@629 125
Chris@629 126 int cols = list.size();
Chris@991 127 if (lineno == 0 || (cols > m_columnCount)) m_columnCount = cols;
Chris@629 128 if (cols != m_columnCount) m_variableColumnCount = true;
Chris@629 129
Chris@629 130 // All columns are regarded as having these qualities until we see
Chris@629 131 // something that indicates otherwise:
Chris@629 132
Chris@629 133 ColumnQualities defaultQualities =
Chris@1512 134 ColumnNumeric | ColumnIntegral | ColumnSmall |
Chris@1512 135 ColumnIncreasing | ColumnNearEmpty;
Chris@629 136
Chris@629 137 for (int i = 0; i < cols; ++i) {
Chris@1429 138
Chris@629 139 while (m_columnQualities.size() <= i) {
Chris@629 140 m_columnQualities.push_back(defaultQualities);
Chris@629 141 m_prevValues.push_back(0.f);
Chris@629 142 }
Chris@629 143
Chris@629 144 QString s(list[i]);
Chris@629 145 bool ok = false;
Chris@629 146
Chris@629 147 ColumnQualities qualities = m_columnQualities[i];
Chris@629 148
Chris@1523 149 // Looks like this is defined on Windows
Chris@1523 150 #undef small
Chris@1523 151
Chris@629 152 bool numeric = (qualities & ColumnNumeric);
Chris@629 153 bool integral = (qualities & ColumnIntegral);
Chris@629 154 bool increasing = (qualities & ColumnIncreasing);
Chris@1512 155 bool small = (qualities & ColumnSmall);
Chris@629 156 bool large = (qualities & ColumnLarge); // this one defaults to off
Chris@1512 157 bool signd = (qualities & ColumnSigned); // also defaults to off
Chris@1021 158 bool emptyish = (qualities & ColumnNearEmpty);
Chris@629 159
Chris@1021 160 if (lineno > 1 && s.trimmed() != "") {
Chris@1021 161 emptyish = false;
Chris@1021 162 }
Chris@1021 163
Chris@629 164 float value = 0.f;
Chris@629 165
Chris@629 166 //!!! how to take into account headers?
Chris@629 167
Chris@629 168 if (numeric) {
Chris@629 169 value = s.toFloat(&ok);
Chris@629 170 if (!ok) {
Chris@629 171 value = (float)StringBits::stringToDoubleLocaleFree(s, &ok);
Chris@629 172 }
Chris@629 173 if (ok) {
Chris@1512 174 if (lineno < 2 && value > 1000.f) {
Chris@1512 175 large = true;
Chris@1512 176 }
Chris@1512 177 if (value < 0.f) {
Chris@1512 178 signd = true;
Chris@1512 179 }
Chris@1512 180 if (value < -1.f || value > 1.f) {
Chris@1512 181 small = false;
Chris@1512 182 }
Chris@629 183 } else {
Chris@629 184 numeric = false;
Chris@1524 185
Chris@1524 186 // If the column is not numeric, it can't be any of
Chris@1524 187 // these things either
Chris@1524 188 integral = false;
Chris@1524 189 increasing = false;
Chris@1524 190 small = false;
Chris@1524 191 large = false;
Chris@1524 192 signd = false;
Chris@629 193 }
Chris@629 194 }
Chris@629 195
Chris@629 196 if (numeric) {
Chris@629 197
Chris@629 198 if (integral) {
Chris@629 199 if (s.contains('.') || s.contains(',')) {
Chris@629 200 integral = false;
Chris@392 201 }
Chris@392 202 }
Chris@392 203
Chris@629 204 if (increasing) {
Chris@629 205 if (lineno > 0 && value <= m_prevValues[i]) {
Chris@629 206 increasing = false;
Chris@392 207 }
Chris@392 208 }
Chris@392 209
Chris@629 210 m_prevValues[i] = value;
Chris@629 211 }
Chris@1524 212
Chris@629 213 m_columnQualities[i] =
Chris@629 214 (numeric ? ColumnNumeric : 0) |
Chris@629 215 (integral ? ColumnIntegral : 0) |
Chris@629 216 (increasing ? ColumnIncreasing : 0) |
Chris@1512 217 (small ? ColumnSmall : 0) |
Chris@1021 218 (large ? ColumnLarge : 0) |
Chris@1512 219 (signd ? ColumnSigned : 0) |
Chris@1021 220 (emptyish ? ColumnNearEmpty : 0);
Chris@629 221 }
Chris@392 222
Chris@629 223 if (lineno < 10) {
Chris@629 224 m_example.push_back(list);
Chris@629 225 if (lineno == 0 || cols > m_maxExampleCols) {
Chris@629 226 m_maxExampleCols = cols;
Chris@392 227 }
Chris@392 228 }
Chris@392 229
Chris@1362 230 if (lineno < 10) {
Chris@1362 231 SVDEBUG << "Estimated column qualities for line " << lineno << " (reporting up to first 10): ";
Chris@1362 232 for (int i = 0; i < m_columnCount; ++i) {
Chris@1362 233 SVDEBUG << int(m_columnQualities[i]) << " ";
Chris@1362 234 }
Chris@1362 235 SVDEBUG << endl;
Chris@1362 236 }
Chris@629 237 }
Chris@629 238
Chris@629 239 void
Chris@629 240 CSVFormat::guessPurposes()
Chris@629 241 {
Chris@629 242 m_timingType = CSVFormat::ImplicitTiming;
Chris@629 243 m_timeUnits = CSVFormat::TimeWindows;
Chris@1429 244
Chris@629 245 int timingColumnCount = 0;
Chris@1525 246 bool haveDurationOrEndTime = false;
Chris@1021 247
Chris@1510 248 SVDEBUG << "Estimated column qualities overall: ";
Chris@1510 249 for (int i = 0; i < m_columnCount; ++i) {
Chris@1510 250 SVDEBUG << int(m_columnQualities[i]) << " ";
Chris@1510 251 }
Chris@1510 252 SVDEBUG << endl;
Chris@1510 253
Chris@1021 254 // if our first column has zero or one entries in it and the rest
Chris@1021 255 // have more, then we'll default to ignoring the first column and
Chris@1021 256 // counting the next one as primary. (e.g. Sonic Annotator output
Chris@1021 257 // with filename at start of first column.)
Chris@1021 258
Chris@1021 259 int primaryColumnNo = 0;
Chris@1021 260
Chris@1021 261 if (m_columnCount >= 2) {
Chris@1021 262 if ( (m_columnQualities[0] & ColumnNearEmpty) &&
Chris@1021 263 !(m_columnQualities[1] & ColumnNearEmpty)) {
Chris@1021 264 primaryColumnNo = 1;
Chris@1021 265 }
Chris@1021 266 }
Chris@629 267
Chris@629 268 for (int i = 0; i < m_columnCount; ++i) {
Chris@629 269
Chris@629 270 ColumnPurpose purpose = ColumnUnknown;
Chris@1021 271
Chris@1021 272 if (i < primaryColumnNo) {
Chris@1021 273 setColumnPurpose(i, purpose);
Chris@1021 274 continue;
Chris@1021 275 }
Chris@1021 276
Chris@1021 277 bool primary = (i == primaryColumnNo);
Chris@392 278
Chris@629 279 ColumnQualities qualities = m_columnQualities[i];
Chris@392 280
Chris@629 281 bool numeric = (qualities & ColumnNumeric);
Chris@629 282 bool integral = (qualities & ColumnIntegral);
Chris@629 283 bool increasing = (qualities & ColumnIncreasing);
Chris@629 284 bool large = (qualities & ColumnLarge);
Chris@629 285
Chris@629 286 bool timingColumn = (numeric && increasing);
Chris@629 287
Chris@629 288 if (timingColumn) {
Chris@629 289
Chris@629 290 ++timingColumnCount;
Chris@629 291
Chris@629 292 if (primary) {
Chris@629 293
Chris@629 294 purpose = ColumnStartTime;
Chris@629 295
Chris@629 296 m_timingType = ExplicitTiming;
Chris@629 297
Chris@629 298 if (integral && large) {
Chris@629 299 m_timeUnits = TimeAudioFrames;
Chris@629 300 } else {
Chris@629 301 m_timeUnits = TimeSeconds;
Chris@629 302 }
Chris@629 303
Chris@629 304 } else {
Chris@629 305
Chris@629 306 if (timingColumnCount == 2 && m_timingType == ExplicitTiming) {
Chris@629 307 purpose = ColumnEndTime;
Chris@1525 308 haveDurationOrEndTime = true;
Chris@629 309 }
Chris@629 310 }
Chris@629 311 }
Chris@629 312
Chris@629 313 if (purpose == ColumnUnknown) {
Chris@629 314 if (numeric) {
Chris@629 315 purpose = ColumnValue;
Chris@629 316 } else {
Chris@629 317 purpose = ColumnLabel;
Chris@629 318 }
Chris@629 319 }
Chris@629 320
Chris@631 321 setColumnPurpose(i, purpose);
Chris@629 322 }
Chris@629 323
Chris@629 324 int valueCount = 0;
Chris@629 325 for (int i = 0; i < m_columnCount; ++i) {
Chris@629 326 if (m_columnPurposes[i] == ColumnValue) ++valueCount;
Chris@629 327 }
Chris@629 328
Chris@630 329 if (valueCount == 2 && timingColumnCount == 1) {
Chris@630 330 // If we have exactly two apparent value columns and only one
Chris@630 331 // timing column, but one value column is integral and the
Chris@630 332 // other is not, guess that whichever one matches the integral
Chris@630 333 // status of the time column is either duration or end time
Chris@630 334 if (m_timingType == ExplicitTiming) {
Chris@630 335 int a = -1, b = -1;
Chris@630 336 for (int i = 0; i < m_columnCount; ++i) {
Chris@630 337 if (m_columnPurposes[i] == ColumnValue) {
Chris@630 338 if (a == -1) a = i;
Chris@630 339 else b = i;
Chris@630 340 }
Chris@630 341 }
Chris@630 342 if ((m_columnQualities[a] & ColumnIntegral) !=
Chris@630 343 (m_columnQualities[b] & ColumnIntegral)) {
Chris@630 344 int timecol = a;
Chris@630 345 if ((m_columnQualities[a] & ColumnIntegral) !=
Chris@630 346 (m_columnQualities[0] & ColumnIntegral)) {
Chris@630 347 timecol = b;
Chris@630 348 }
Chris@630 349 if (m_columnQualities[timecol] & ColumnIncreasing) {
Chris@630 350 // This shouldn't happen; should have been settled above
Chris@630 351 m_columnPurposes[timecol] = ColumnEndTime;
Chris@1525 352 haveDurationOrEndTime = true;
Chris@630 353 } else {
Chris@630 354 m_columnPurposes[timecol] = ColumnDuration;
Chris@1525 355 haveDurationOrEndTime = true;
Chris@630 356 }
Chris@630 357 --valueCount;
Chris@630 358 }
Chris@630 359 }
Chris@630 360 }
Chris@630 361
Chris@1525 362 if (timingColumnCount > 1 || haveDurationOrEndTime) {
Chris@631 363 m_modelType = TwoDimensionalModelWithDuration;
Chris@392 364 } else {
Chris@631 365 if (valueCount == 0) {
Chris@631 366 m_modelType = OneDimensionalModel;
Chris@631 367 } else if (valueCount == 1) {
Chris@631 368 m_modelType = TwoDimensionalModel;
Chris@631 369 } else {
Chris@631 370 m_modelType = ThreeDimensionalModel;
Chris@631 371 }
Chris@629 372 }
Chris@392 373
Chris@1362 374 SVDEBUG << "Estimated column purposes: ";
Chris@1362 375 for (int i = 0; i < m_columnCount; ++i) {
Chris@1362 376 SVDEBUG << int(m_columnPurposes[i]) << " ";
Chris@1362 377 }
Chris@1362 378 SVDEBUG << endl;
Chris@392 379
Chris@1362 380 SVDEBUG << "Estimated model type: " << m_modelType << endl;
Chris@1362 381 SVDEBUG << "Estimated timing type: " << m_timingType << endl;
Chris@1362 382 SVDEBUG << "Estimated units: " << m_timeUnits << endl;
Chris@392 383 }
Chris@392 384
Chris@1515 385 void
Chris@1515 386 CSVFormat::guessAudioSampleRange()
Chris@1515 387 {
Chris@1515 388 AudioSampleRange range = SampleRangeSigned1;
Chris@1515 389
Chris@1515 390 range = SampleRangeSigned1;
Chris@1515 391 bool knownSigned = false;
Chris@1515 392 bool knownNonIntegral = false;
Chris@1521 393
Chris@1521 394 SVDEBUG << "CSVFormat::guessAudioSampleRange: starting with assumption of "
Chris@1521 395 << range << endl;
Chris@1515 396
Chris@1515 397 for (int i = 0; i < m_columnCount; ++i) {
Chris@1521 398 if (m_columnPurposes[i] != ColumnValue) {
Chris@1521 399 SVDEBUG << "... column " << i
Chris@1521 400 << " is not apparently a value, ignoring" << endl;
Chris@1521 401 continue;
Chris@1521 402 }
Chris@1515 403 if (!(m_columnQualities[i] & ColumnIntegral)) {
Chris@1515 404 knownNonIntegral = true;
Chris@1515 405 if (range == SampleRangeUnsigned255 ||
Chris@1515 406 range == SampleRangeSigned32767) {
Chris@1515 407 range = SampleRangeOther;
Chris@1515 408 }
Chris@1521 409 SVDEBUG << "... column " << i
Chris@1521 410 << " is non-integral, updating range to " << range << endl;
Chris@1515 411 }
Chris@1515 412 if (m_columnQualities[i] & ColumnLarge) {
Chris@1515 413 if (range == SampleRangeSigned1 ||
Chris@1515 414 range == SampleRangeUnsigned255) {
Chris@1515 415 if (knownNonIntegral) {
Chris@1515 416 range = SampleRangeOther;
Chris@1515 417 } else {
Chris@1515 418 range = SampleRangeSigned32767;
Chris@1515 419 }
Chris@1515 420 }
Chris@1521 421 SVDEBUG << "... column " << i << " is large, updating range to "
Chris@1521 422 << range << endl;
Chris@1515 423 }
Chris@1515 424 if (m_columnQualities[i] & ColumnSigned) {
Chris@1515 425 knownSigned = true;
Chris@1515 426 if (range == SampleRangeUnsigned255) {
Chris@1515 427 range = SampleRangeSigned32767;
Chris@1515 428 }
Chris@1521 429 SVDEBUG << "... column " << i << " is signed, updating range to "
Chris@1521 430 << range << endl;
Chris@1515 431 }
Chris@1515 432 if (!(m_columnQualities[i] & ColumnSmall)) {
Chris@1515 433 if (range == SampleRangeSigned1) {
Chris@1515 434 if (knownNonIntegral) {
Chris@1515 435 range = SampleRangeOther;
Chris@1515 436 } else if (knownSigned) {
Chris@1515 437 range = SampleRangeSigned32767;
Chris@1515 438 } else {
Chris@1515 439 range = SampleRangeUnsigned255;
Chris@1515 440 }
Chris@1515 441 }
Chris@1521 442 SVDEBUG << "... column " << i << " is not small, updating range to "
Chris@1521 443 << range << endl;
Chris@1515 444 }
Chris@1515 445 }
Chris@1515 446
Chris@1521 447 SVDEBUG << "CSVFormat::guessAudioSampleRange: ended up with range "
Chris@1521 448 << range << endl;
Chris@1521 449
Chris@1515 450 m_audioSampleRange = range;
Chris@1515 451 }
Chris@1515 452
Chris@631 453 CSVFormat::ColumnPurpose
Chris@631 454 CSVFormat::getColumnPurpose(int i)
Chris@631 455 {
Chris@631 456 while (m_columnPurposes.size() <= i) {
Chris@631 457 m_columnPurposes.push_back(ColumnUnknown);
Chris@631 458 }
Chris@631 459 return m_columnPurposes[i];
Chris@631 460 }
Chris@629 461
Chris@631 462 CSVFormat::ColumnPurpose
Chris@631 463 CSVFormat::getColumnPurpose(int i) const
Chris@631 464 {
Chris@668 465 if (m_columnPurposes.size() <= i) {
Chris@668 466 return ColumnUnknown;
Chris@668 467 }
Chris@631 468 return m_columnPurposes[i];
Chris@631 469 }
Chris@631 470
Chris@631 471 void
Chris@631 472 CSVFormat::setColumnPurpose(int i, ColumnPurpose p)
Chris@631 473 {
Chris@631 474 while (m_columnPurposes.size() <= i) {
Chris@631 475 m_columnPurposes.push_back(ColumnUnknown);
Chris@631 476 }
Chris@631 477 m_columnPurposes[i] = p;
Chris@631 478 }
Chris@631 479
Chris@631 480
Chris@631 481
Chris@631 482