annotate framework/Align.cpp @ 691:c8ba09756eff by-id

Work on management of alignment-related models
author Chris Cannam
date Fri, 12 Jul 2019 13:58:02 +0100
parents e0b0f3e163ca
children 3e34eeb92647
rev   line source
Chris@420 1 /* -*- c-basic-offset: 4 indent-tabs-mode: nil -*- vi:set ts=8 sts=4 sw=4: */
Chris@420 2
Chris@420 3 /*
Chris@420 4 Sonic Visualiser
Chris@420 5 An audio file viewer and annotation editor.
Chris@420 6 Centre for Digital Music, Queen Mary, University of London.
Chris@420 7
Chris@420 8 This program is free software; you can redistribute it and/or
Chris@420 9 modify it under the terms of the GNU General Public License as
Chris@420 10 published by the Free Software Foundation; either version 2 of the
Chris@420 11 License, or (at your option) any later version. See the file
Chris@420 12 COPYING included with this distribution for more information.
Chris@420 13 */
Chris@420 14
Chris@420 15 #include "Align.h"
Chris@665 16 #include "Document.h"
Chris@420 17
Chris@420 18 #include "data/model/WaveFileModel.h"
Chris@515 19 #include "data/model/ReadOnlyWaveFileModel.h"
Chris@420 20 #include "data/model/AggregateWaveModel.h"
Chris@420 21 #include "data/model/RangeSummarisableTimeValueModel.h"
Chris@420 22 #include "data/model/SparseTimeValueModel.h"
Chris@420 23 #include "data/model/AlignmentModel.h"
Chris@420 24
Chris@420 25 #include "data/fileio/CSVFileReader.h"
Chris@420 26
Chris@420 27 #include "transform/TransformFactory.h"
Chris@420 28 #include "transform/ModelTransformerFactory.h"
Chris@420 29 #include "transform/FeatureExtractionModelTransformer.h"
Chris@420 30
Chris@420 31 #include <QProcess>
Chris@422 32 #include <QSettings>
Chris@430 33 #include <QApplication>
Chris@422 34
Chris@422 35 bool
Chris@683 36 Align::alignModel(Document *doc, ModelId ref, ModelId other, QString &error)
Chris@422 37 {
Chris@422 38 QSettings settings;
Chris@422 39 settings.beginGroup("Preferences");
Chris@422 40 bool useProgram = settings.value("use-external-alignment", false).toBool();
Chris@422 41 QString program = settings.value("external-alignment-program", "").toString();
Chris@422 42 settings.endGroup();
Chris@422 43
Chris@422 44 if (useProgram && (program != "")) {
Chris@670 45 return alignModelViaProgram(doc, ref, other, program, error);
Chris@422 46 } else {
Chris@670 47 return alignModelViaTransform(doc, ref, other, error);
Chris@422 48 }
Chris@422 49 }
Chris@420 50
Chris@428 51 QString
Chris@428 52 Align::getAlignmentTransformName()
Chris@428 53 {
Chris@428 54 QSettings settings;
Chris@428 55 settings.beginGroup("Alignment");
Chris@428 56 TransformId id =
Chris@428 57 settings.value("transform-id",
Chris@428 58 "vamp:match-vamp-plugin:match:path").toString();
Chris@428 59 settings.endGroup();
Chris@428 60 return id;
Chris@428 61 }
Chris@428 62
Chris@670 63 QString
Chris@670 64 Align::getTuningDifferenceTransformName()
Chris@670 65 {
Chris@670 66 QSettings settings;
Chris@670 67 settings.beginGroup("Alignment");
Chris@670 68 bool performPitchCompensation =
Chris@670 69 settings.value("align-pitch-aware", false).toBool();
Chris@670 70 QString id = "";
Chris@671 71 if (performPitchCompensation) {
Chris@670 72 id = settings.value
Chris@670 73 ("tuning-difference-transform-id",
Chris@670 74 "vamp:tuning-difference:tuning-difference:tuningfreq")
Chris@670 75 .toString();
Chris@671 76 }
Chris@670 77 settings.endGroup();
Chris@670 78 return id;
Chris@670 79 }
Chris@670 80
Chris@428 81 bool
Chris@428 82 Align::canAlign()
Chris@428 83 {
Chris@670 84 TransformFactory *factory = TransformFactory::getInstance();
Chris@428 85 TransformId id = getAlignmentTransformName();
Chris@670 86 TransformId tdId = getTuningDifferenceTransformName();
Chris@670 87 return factory->haveTransform(id) &&
Chris@670 88 (tdId == "" || factory->haveTransform(tdId));
Chris@428 89 }
Chris@428 90
Chris@420 91 bool
Chris@687 92 Align::alignModelViaTransform(Document *doc,
Chris@687 93 ModelId referenceId,
Chris@687 94 ModelId otherId,
Chris@670 95 QString &error)
Chris@420 96 {
Chris@670 97 QMutexLocker locker (&m_mutex);
Chris@420 98
Chris@687 99 auto reference =
Chris@687 100 ModelById::getAs<RangeSummarisableTimeValueModel>(referenceId);
Chris@687 101 auto other =
Chris@687 102 ModelById::getAs<RangeSummarisableTimeValueModel>(otherId);
Chris@687 103
Chris@687 104 if (!reference || !other) return false;
Chris@420 105
Chris@691 106 // This involves creating a number of new models:
Chris@672 107 //
Chris@420 108 // 1. an AggregateWaveModel to provide the mixdowns of the main
Chris@420 109 // model and the new model in its two channels, as input to the
Chris@691 110 // MATCH plugin. We just call this one aggregateModel
Chris@672 111 //
Chris@670 112 // 2a. a SparseTimeValueModel which will be automatically created
Chris@670 113 // by FeatureExtractionModelTransformer when running the
Chris@670 114 // TuningDifference plugin to receive the relative tuning of the
Chris@670 115 // second model (if pitch-aware alignment is enabled in the
Chris@691 116 // preferences). We call this tuningDiffOutputModel.
Chris@672 117 //
Chris@670 118 // 2b. a SparseTimeValueModel which will be automatically created
Chris@670 119 // by FeatureExtractionPluginTransformer when running the MATCH
Chris@691 120 // plugin to perform alignment (so containing the alignment path).
Chris@691 121 // We call this one pathOutputModel.
Chris@672 122 //
Chris@691 123 // 2c. a SparseTimeValueModel used solely to provide faked
Chris@691 124 // completion information to the AlignmentModel while a
Chris@691 125 // TuningDifference calculation is going on. We call this
Chris@691 126 // preparatoryModel.
Chris@672 127 //
Chris@691 128 // 3. an AlignmentModel, which stores the path and carries out
Chris@691 129 // alignment lookups on it. We just call this one alignmentModel.
Chris@672 130 //
Chris@691 131 // Models 1 and 3 are registered with the document, which will
Chris@691 132 // eventually release them. We don't release them here except in
Chris@691 133 // the case where an activity fails before the point where we
Chris@691 134 // would otherwise have registered them with the document.
Chris@691 135 //
Chris@691 136 // Models 2a (tuningDiffOutputModel), 2b (pathOutputModel) and 2c
Chris@691 137 // (preparatoryModel) are not registered with the document. Model
Chris@691 138 // 2b (pathOutputModel) is not registered because we do not have a
Chris@691 139 // stable reference to the document at the point where it is
Chris@691 140 // created. Model 2c (preparatoryModel) is not registered because
Chris@691 141 // it is a bodge that we are embarrassed about, so we try to
Chris@691 142 // manage it ourselves without anyone else noticing. Model 2a is
Chris@691 143 // not registered for symmetry with the other two. These have to
Chris@691 144 // be released by us when finished with, but their lifespans do
Chris@691 145 // not extend beyond the end of the alignment procedure, so this
Chris@691 146 // should be ok.
Chris@420 147
Chris@420 148 AggregateWaveModel::ChannelSpecList components;
Chris@420 149
Chris@687 150 components.push_back
Chris@687 151 (AggregateWaveModel::ModelChannelSpec(referenceId, -1));
Chris@420 152
Chris@687 153 components.push_back
Chris@687 154 (AggregateWaveModel::ModelChannelSpec(otherId, -1));
Chris@420 155
Chris@683 156 auto aggregateModel = std::make_shared<AggregateWaveModel>(components);
Chris@687 157 auto aggregateModelId = ModelById::add(aggregateModel);
Chris@691 158 doc->addNonDerivedModel(aggregateModelId);
Chris@670 159
Chris@687 160 auto alignmentModel = std::make_shared<AlignmentModel>
Chris@687 161 (referenceId, otherId, ModelId());
Chris@687 162 auto alignmentModelId = ModelById::add(alignmentModel);
Chris@670 163
Chris@670 164 TransformId tdId = getTuningDifferenceTransformName();
Chris@670 165
Chris@670 166 if (tdId == "") {
Chris@670 167
Chris@687 168 if (beginTransformDrivenAlignment(aggregateModelId,
Chris@687 169 alignmentModelId)) {
Chris@687 170 other->setAlignment(alignmentModelId);
Chris@691 171 doc->addNonDerivedModel(alignmentModelId);
Chris@670 172 } else {
Chris@670 173 error = alignmentModel->getError();
Chris@683 174 ModelById::release(alignmentModel);
Chris@670 175 return false;
Chris@670 176 }
Chris@670 177
Chris@670 178 } else {
Chris@670 179
Chris@670 180 // Have a tuning-difference transform id, so run it
Chris@670 181 // asynchronously first
Chris@670 182
Chris@670 183 TransformFactory *tf = TransformFactory::getInstance();
Chris@670 184
Chris@670 185 Transform transform = tf->getDefaultTransformFor
Chris@670 186 (tdId, aggregateModel->getSampleRate());
Chris@670 187
Chris@678 188 transform.setParameter("maxduration", 60);
Chris@678 189 transform.setParameter("maxrange", 6);
Chris@678 190 transform.setParameter("finetuning", false);
Chris@671 191
Chris@670 192 SVDEBUG << "Align::alignModel: Tuning difference transform step size " << transform.getStepSize() << ", block size " << transform.getBlockSize() << endl;
Chris@670 193
Chris@670 194 ModelTransformerFactory *mtf = ModelTransformerFactory::getInstance();
Chris@670 195
Chris@670 196 QString message;
Chris@691 197 ModelId tuningDiffOutputModelId = mtf->transform(transform,
Chris@691 198 aggregateModelId,
Chris@691 199 message);
Chris@670 200
Chris@691 201 auto tuningDiffOutputModel =
Chris@691 202 ModelById::getAs<SparseTimeValueModel>(tuningDiffOutputModelId);
Chris@691 203 if (!tuningDiffOutputModel) {
Chris@670 204 SVCERR << "Align::alignModel: ERROR: Failed to create tuning-difference output model (no Tuning Difference plugin?)" << endl;
Chris@670 205 error = message;
Chris@691 206 ModelById::release(alignmentModel);
Chris@670 207 return false;
Chris@670 208 }
Chris@670 209
Chris@687 210 other->setAlignment(alignmentModelId);
Chris@691 211 doc->addNonDerivedModel(alignmentModelId);
Chris@665 212
Chris@691 213 connect(tuningDiffOutputModel.get(),
Chris@691 214 SIGNAL(completionChanged(ModelId)),
Chris@687 215 this, SLOT(tuningDifferenceCompletionChanged(ModelId)));
Chris@420 216
Chris@671 217 TuningDiffRec rec;
Chris@687 218 rec.input = aggregateModelId;
Chris@687 219 rec.alignment = alignmentModelId;
Chris@677 220
Chris@671 221 // This model exists only so that the AlignmentModel can get a
Chris@671 222 // completion value from somewhere while the tuning difference
Chris@671 223 // calculation is going on
Chris@683 224 auto preparatoryModel = std::make_shared<SparseTimeValueModel>
Chris@683 225 (aggregateModel->getSampleRate(), 1);
Chris@687 226 auto preparatoryModelId = ModelById::add(preparatoryModel);
Chris@683 227 preparatoryModel->setCompletion(0);
Chris@687 228 rec.preparatory = preparatoryModelId;
Chris@671 229 alignmentModel->setPathFrom(rec.preparatory);
Chris@671 230
Chris@691 231 m_pendingTuningDiffs[tuningDiffOutputModelId] = rec;
Chris@670 232 }
Chris@670 233
Chris@670 234 return true;
Chris@670 235 }
Chris@670 236
Chris@671 237 void
Chris@691 238 Align::tuningDifferenceCompletionChanged(ModelId tuningDiffOutputModelId)
Chris@671 239 {
Chris@687 240 QMutexLocker locker(&m_mutex);
Chris@671 241
Chris@691 242 if (m_pendingTuningDiffs.find(tuningDiffOutputModelId) ==
Chris@691 243 m_pendingTuningDiffs.end()) {
Chris@683 244 SVCERR << "ERROR: Align::tuningDifferenceCompletionChanged: Model "
Chris@691 245 << tuningDiffOutputModelId
Chris@691 246 << " not found in pending tuning diff map!" << endl;
Chris@683 247 return;
Chris@683 248 }
Chris@671 249
Chris@691 250 auto tuningDiffOutputModel =
Chris@691 251 ModelById::getAs<SparseTimeValueModel>(tuningDiffOutputModelId);
Chris@691 252 if (!tuningDiffOutputModel) {
Chris@683 253 SVCERR << "WARNING: Align::tuningDifferenceCompletionChanged: Model "
Chris@691 254 << tuningDiffOutputModelId
Chris@691 255 << " not known as SparseTimeValueModel" << endl;
Chris@683 256 return;
Chris@683 257 }
Chris@683 258
Chris@691 259 TuningDiffRec rec = m_pendingTuningDiffs[tuningDiffOutputModelId];
Chris@683 260
Chris@691 261 auto alignmentModel = ModelById::getAs<AlignmentModel>(rec.alignment);
Chris@691 262 if (!alignmentModel) {
Chris@683 263 SVCERR << "WARNING: Align::tuningDifferenceCompletionChanged:"
Chris@683 264 << "alignment model has disappeared" << endl;
Chris@683 265 return;
Chris@683 266 }
Chris@683 267
Chris@671 268 int completion = 0;
Chris@691 269 bool done = tuningDiffOutputModel->isReady(&completion);
Chris@671 270
Chris@671 271 if (!done) {
Chris@671 272 // This will be the completion the alignment model reports,
Chris@671 273 // before the alignment actually begins. It goes up from 0 to
Chris@671 274 // 99 (not 100!) and then back to 0 again when we start
Chris@671 275 // calculating the actual path in the following phase
Chris@671 276 int clamped = (completion == 100 ? 99 : completion);
Chris@691 277 auto preparatoryModel =
Chris@691 278 ModelById::getAs<SparseTimeValueModel>(rec.preparatory);
Chris@691 279 if (preparatoryModel) {
Chris@691 280 preparatoryModel->setCompletion(clamped);
Chris@683 281 }
Chris@671 282 return;
Chris@671 283 }
Chris@671 284
Chris@671 285 float tuningFrequency = 440.f;
Chris@671 286
Chris@691 287 if (!tuningDiffOutputModel->isEmpty()) {
Chris@691 288 tuningFrequency = tuningDiffOutputModel->getAllEvents()[0].getValue();
Chris@671 289 SVCERR << "Align::tuningDifferenceCompletionChanged: Reported tuning frequency = " << tuningFrequency << endl;
Chris@671 290 } else {
Chris@671 291 SVCERR << "Align::tuningDifferenceCompletionChanged: No tuning frequency reported" << endl;
Chris@671 292 }
Chris@671 293
Chris@691 294 ModelById::release(tuningDiffOutputModel);
Chris@683 295
Chris@691 296 alignmentModel->setPathFrom({}); // replace preparatoryModel
Chris@691 297 ModelById::release(rec.preparatory);
Chris@691 298 rec.preparatory = {};
Chris@691 299
Chris@691 300 m_pendingTuningDiffs.erase(tuningDiffOutputModelId);
Chris@671 301
Chris@671 302 beginTransformDrivenAlignment
Chris@671 303 (rec.input, rec.alignment, tuningFrequency);
Chris@671 304 }
Chris@671 305
Chris@670 306 bool
Chris@683 307 Align::beginTransformDrivenAlignment(ModelId aggregateModelId,
Chris@683 308 ModelId alignmentModelId,
Chris@670 309 float tuningFrequency)
Chris@670 310 {
Chris@428 311 TransformId id = getAlignmentTransformName();
Chris@420 312
Chris@420 313 TransformFactory *tf = TransformFactory::getInstance();
Chris@420 314
Chris@691 315 auto aggregateModel =
Chris@691 316 ModelById::getAs<AggregateWaveModel>(aggregateModelId);
Chris@691 317 auto alignmentModel =
Chris@691 318 ModelById::getAs<AlignmentModel>(alignmentModelId);
Chris@683 319
Chris@683 320 if (!aggregateModel || !alignmentModel) {
Chris@683 321 SVCERR << "Align::alignModel: ERROR: One or other of the aggregate & alignment models has disappeared" << endl;
Chris@683 322 return false;
Chris@683 323 }
Chris@683 324
Chris@420 325 Transform transform = tf->getDefaultTransformFor
Chris@420 326 (id, aggregateModel->getSampleRate());
Chris@420 327
Chris@420 328 transform.setStepSize(transform.getBlockSize()/2);
Chris@420 329 transform.setParameter("serialise", 1);
Chris@420 330 transform.setParameter("smooth", 0);
Chris@420 331
Chris@670 332 if (tuningFrequency != 0.f) {
Chris@670 333 transform.setParameter("freq2", tuningFrequency);
Chris@670 334 }
Chris@670 335
Chris@420 336 SVDEBUG << "Align::alignModel: Alignment transform step size " << transform.getStepSize() << ", block size " << transform.getBlockSize() << endl;
Chris@420 337
Chris@420 338 ModelTransformerFactory *mtf = ModelTransformerFactory::getInstance();
Chris@420 339
Chris@420 340 QString message;
Chris@691 341 ModelId pathOutputModelId = mtf->transform
Chris@683 342 (transform, aggregateModelId, message);
Chris@420 343
Chris@691 344 if (pathOutputModelId.isNone()) {
Chris@420 345 transform.setStepSize(0);
Chris@691 346 pathOutputModelId = mtf->transform
Chris@683 347 (transform, aggregateModelId, message);
Chris@420 348 }
Chris@420 349
Chris@691 350 auto pathOutputModel =
Chris@691 351 ModelById::getAs<SparseTimeValueModel>(pathOutputModelId);
Chris@420 352
Chris@670 353 //!!! callers will need to be updated to get error from
Chris@670 354 //!!! alignment model after initial call
Chris@670 355
Chris@691 356 if (!pathOutputModel) {
Chris@649 357 SVCERR << "Align::alignModel: ERROR: Failed to create alignment path (no MATCH plugin?)" << endl;
Chris@670 358 alignmentModel->setError(message);
Chris@420 359 return false;
Chris@420 360 }
Chris@420 361
Chris@691 362 pathOutputModel->setCompletion(0);
Chris@691 363 alignmentModel->setPathFrom(pathOutputModelId);
Chris@691 364
Chris@691 365 m_pendingAlignments[alignmentModelId] = pathOutputModelId;
Chris@420 366
Chris@687 367 connect(alignmentModel.get(), SIGNAL(completionChanged(ModelId)),
Chris@687 368 this, SLOT(alignmentCompletionChanged(ModelId)));
Chris@420 369
Chris@420 370 return true;
Chris@420 371 }
Chris@420 372
Chris@428 373 void
Chris@691 374 Align::alignmentCompletionChanged(ModelId alignmentModelId)
Chris@428 375 {
Chris@670 376 QMutexLocker locker (&m_mutex);
Chris@683 377
Chris@691 378 auto alignmentModel = ModelById::getAs<AlignmentModel>(alignmentModelId);
Chris@691 379
Chris@691 380 if (alignmentModel && alignmentModel->isReady()) {
Chris@691 381
Chris@691 382 if (m_pendingAlignments.find(alignmentModelId) !=
Chris@691 383 m_pendingAlignments.end()) {
Chris@691 384 ModelId pathOutputModelId = m_pendingAlignments[alignmentModelId];
Chris@691 385 ModelById::release(pathOutputModelId);
Chris@691 386 m_pendingAlignments.erase(alignmentModelId);
Chris@691 387 }
Chris@691 388
Chris@691 389 disconnect(alignmentModel.get(),
Chris@691 390 SIGNAL(completionChanged(ModelId)),
Chris@687 391 this, SLOT(alignmentCompletionChanged(ModelId)));
Chris@691 392 emit alignmentComplete(alignmentModelId);
Chris@428 393 }
Chris@428 394 }
Chris@428 395
Chris@420 396 bool
Chris@691 397 Align::alignModelViaProgram(Document *doc,
Chris@687 398 ModelId referenceId,
Chris@687 399 ModelId otherId,
Chris@687 400 QString program,
Chris@687 401 QString &error)
Chris@420 402 {
Chris@670 403 QMutexLocker locker (&m_mutex);
Chris@430 404
Chris@420 405 // Run an external program, passing to it paths to the main
Chris@420 406 // model's audio file and the new model's audio file. It returns
Chris@420 407 // the path in CSV form through stdout.
Chris@420 408
Chris@687 409 auto reference = ModelById::getAs<ReadOnlyWaveFileModel>(referenceId);
Chris@687 410 auto other = ModelById::getAs<ReadOnlyWaveFileModel>(otherId);
Chris@687 411 if (!reference || !other) {
Chris@649 412 SVCERR << "ERROR: Align::alignModelViaProgram: Can't align non-read-only models via program (no local filename available)" << endl;
Chris@515 413 return false;
Chris@515 414 }
Chris@687 415
Chris@687 416 while (!reference->isReady(nullptr) || !other->isReady(nullptr)) {
Chris@687 417 qApp->processEvents();
Chris@687 418 }
Chris@515 419
Chris@687 420 QString refPath = reference->getLocalFilename();
Chris@687 421 QString otherPath = other->getLocalFilename();
Chris@420 422
Chris@420 423 if (refPath == "" || otherPath == "") {
Chris@670 424 error = "Failed to find local filepath for wave-file model";
Chris@595 425 return false;
Chris@420 426 }
Chris@420 427
Chris@687 428 auto alignmentModel =
Chris@687 429 std::make_shared<AlignmentModel>(referenceId, otherId, ModelId());
Chris@687 430 auto alignmentModelId = ModelById::add(alignmentModel);
Chris@687 431 other->setAlignment(alignmentModelId);
Chris@423 432
Chris@423 433 QProcess *process = new QProcess;
Chris@420 434 QStringList args;
Chris@420 435 args << refPath << otherPath;
Chris@423 436
Chris@423 437 connect(process, SIGNAL(finished(int, QProcess::ExitStatus)),
Chris@423 438 this, SLOT(alignmentProgramFinished(int, QProcess::ExitStatus)));
Chris@420 439
Chris@687 440 m_pendingProcesses[process] = alignmentModelId;
Chris@423 441 process->start(program, args);
Chris@420 442
Chris@423 443 bool success = process->waitForStarted();
Chris@423 444
Chris@423 445 if (!success) {
Chris@649 446 SVCERR << "ERROR: Align::alignModelViaProgram: Program did not start"
Chris@649 447 << endl;
Chris@670 448 error = "Alignment program could not be started";
Chris@670 449 m_pendingProcesses.erase(process);
Chris@687 450 other->setAlignment({});
Chris@691 451 ModelById::release(alignmentModelId);
Chris@423 452 delete process;
Chris@423 453 }
Chris@423 454
Chris@691 455 doc->addNonDerivedModel(alignmentModelId);
Chris@423 456 return success;
Chris@423 457 }
Chris@423 458
Chris@423 459 void
Chris@423 460 Align::alignmentProgramFinished(int exitCode, QProcess::ExitStatus status)
Chris@423 461 {
Chris@670 462 QMutexLocker locker (&m_mutex);
Chris@670 463
Chris@649 464 SVCERR << "Align::alignmentProgramFinished" << endl;
Chris@423 465
Chris@423 466 QProcess *process = qobject_cast<QProcess *>(sender());
Chris@423 467
Chris@670 468 if (m_pendingProcesses.find(process) == m_pendingProcesses.end()) {
Chris@649 469 SVCERR << "ERROR: Align::alignmentProgramFinished: Process " << process
Chris@649 470 << " not found in process model map!" << endl;
Chris@423 471 return;
Chris@423 472 }
Chris@423 473
Chris@683 474 ModelId alignmentModelId = m_pendingProcesses[process];
Chris@683 475 auto alignmentModel = ModelById::getAs<AlignmentModel>(alignmentModelId);
Chris@683 476 if (!alignmentModel) return;
Chris@423 477
Chris@423 478 if (exitCode == 0 && status == 0) {
Chris@420 479
Chris@595 480 CSVFormat format;
Chris@595 481 format.setModelType(CSVFormat::TwoDimensionalModel);
Chris@595 482 format.setTimingType(CSVFormat::ExplicitTiming);
Chris@595 483 format.setTimeUnits(CSVFormat::TimeSeconds);
Chris@595 484 format.setColumnCount(2);
Chris@425 485 // The output format has time in the reference file first, and
Chris@425 486 // time in the "other" file in the second column. This is a
Chris@425 487 // more natural approach for a command-line alignment tool,
Chris@425 488 // but it's the opposite of what we expect for native
Chris@425 489 // alignment paths, which map from "other" file to
Chris@425 490 // reference. These column purpose settings reflect that.
Chris@595 491 format.setColumnPurpose(1, CSVFormat::ColumnStartTime);
Chris@595 492 format.setColumnPurpose(0, CSVFormat::ColumnValue);
Chris@595 493 format.setAllowQuoting(false);
Chris@595 494 format.setSeparator(',');
Chris@420 495
Chris@595 496 CSVFileReader reader(process, format, alignmentModel->getSampleRate());
Chris@595 497 if (!reader.isOK()) {
Chris@649 498 SVCERR << "ERROR: Align::alignmentProgramFinished: Failed to parse output"
Chris@649 499 << endl;
Chris@670 500 alignmentModel->setError
Chris@670 501 (QString("Failed to parse output of program: %1")
Chris@670 502 .arg(reader.getError()));
Chris@423 503 goto done;
Chris@595 504 }
Chris@420 505
Chris@683 506 //!!! to use ById?
Chris@683 507
Chris@595 508 Model *csvOutput = reader.load();
Chris@420 509
Chris@687 510 SparseTimeValueModel *path =
Chris@687 511 qobject_cast<SparseTimeValueModel *>(csvOutput);
Chris@595 512 if (!path) {
Chris@649 513 SVCERR << "ERROR: Align::alignmentProgramFinished: Output did not convert to sparse time-value model"
Chris@649 514 << endl;
Chris@670 515 alignmentModel->setError
Chris@670 516 ("Output of program did not produce sparse time-value model");
Chris@683 517 delete csvOutput;
Chris@423 518 goto done;
Chris@595 519 }
Chris@683 520
Chris@649 521 if (path->isEmpty()) {
Chris@649 522 SVCERR << "ERROR: Align::alignmentProgramFinished: Output contained no mappings"
Chris@649 523 << endl;
Chris@670 524 alignmentModel->setError
Chris@670 525 ("Output of alignment program contained no mappings");
Chris@683 526 delete path;
Chris@423 527 goto done;
Chris@595 528 }
Chris@420 529
Chris@649 530 SVCERR << "Align::alignmentProgramFinished: Setting alignment path ("
Chris@650 531 << path->getEventCount() << " point(s))" << endl;
Chris@650 532
Chris@687 533 auto pathId =
Chris@687 534 ModelById::add(std::shared_ptr<SparseTimeValueModel>(path));
Chris@687 535 alignmentModel->setPathFrom(pathId);
Chris@420 536
Chris@683 537 emit alignmentComplete(alignmentModelId);
Chris@687 538
Chris@687 539 ModelById::release(pathId);
Chris@428 540
Chris@420 541 } else {
Chris@649 542 SVCERR << "ERROR: Align::alignmentProgramFinished: Aligner program "
Chris@649 543 << "failed: exit code " << exitCode << ", status " << status
Chris@649 544 << endl;
Chris@670 545 alignmentModel->setError
Chris@670 546 ("Aligner process returned non-zero exit status");
Chris@420 547 }
Chris@420 548
Chris@423 549 done:
Chris@670 550 m_pendingProcesses.erase(process);
Chris@423 551 delete process;
Chris@420 552 }
Chris@420 553