Chris@420
|
1 /* -*- c-basic-offset: 4 indent-tabs-mode: nil -*- vi:set ts=8 sts=4 sw=4: */
|
Chris@420
|
2
|
Chris@420
|
3 /*
|
Chris@420
|
4 Sonic Visualiser
|
Chris@420
|
5 An audio file viewer and annotation editor.
|
Chris@420
|
6 Centre for Digital Music, Queen Mary, University of London.
|
Chris@420
|
7
|
Chris@420
|
8 This program is free software; you can redistribute it and/or
|
Chris@420
|
9 modify it under the terms of the GNU General Public License as
|
Chris@420
|
10 published by the Free Software Foundation; either version 2 of the
|
Chris@420
|
11 License, or (at your option) any later version. See the file
|
Chris@420
|
12 COPYING included with this distribution for more information.
|
Chris@420
|
13 */
|
Chris@420
|
14
|
Chris@420
|
15 #include "Align.h"
|
Chris@665
|
16 #include "Document.h"
|
Chris@420
|
17
|
Chris@420
|
18 #include "data/model/WaveFileModel.h"
|
Chris@515
|
19 #include "data/model/ReadOnlyWaveFileModel.h"
|
Chris@420
|
20 #include "data/model/AggregateWaveModel.h"
|
Chris@420
|
21 #include "data/model/RangeSummarisableTimeValueModel.h"
|
Chris@420
|
22 #include "data/model/SparseTimeValueModel.h"
|
Chris@420
|
23 #include "data/model/AlignmentModel.h"
|
Chris@420
|
24
|
Chris@420
|
25 #include "data/fileio/CSVFileReader.h"
|
Chris@420
|
26
|
Chris@420
|
27 #include "transform/TransformFactory.h"
|
Chris@420
|
28 #include "transform/ModelTransformerFactory.h"
|
Chris@420
|
29 #include "transform/FeatureExtractionModelTransformer.h"
|
Chris@420
|
30
|
Chris@420
|
31 #include <QProcess>
|
Chris@422
|
32 #include <QSettings>
|
Chris@430
|
33 #include <QApplication>
|
Chris@422
|
34
|
Chris@422
|
35 bool
|
Chris@670
|
36 Align::alignModel(Document *doc, Model *ref, Model *other, QString &error)
|
Chris@422
|
37 {
|
Chris@422
|
38 QSettings settings;
|
Chris@422
|
39 settings.beginGroup("Preferences");
|
Chris@422
|
40 bool useProgram = settings.value("use-external-alignment", false).toBool();
|
Chris@422
|
41 QString program = settings.value("external-alignment-program", "").toString();
|
Chris@422
|
42 settings.endGroup();
|
Chris@422
|
43
|
Chris@422
|
44 if (useProgram && (program != "")) {
|
Chris@670
|
45 return alignModelViaProgram(doc, ref, other, program, error);
|
Chris@422
|
46 } else {
|
Chris@670
|
47 return alignModelViaTransform(doc, ref, other, error);
|
Chris@422
|
48 }
|
Chris@422
|
49 }
|
Chris@420
|
50
|
Chris@428
|
51 QString
|
Chris@428
|
52 Align::getAlignmentTransformName()
|
Chris@428
|
53 {
|
Chris@428
|
54 QSettings settings;
|
Chris@428
|
55 settings.beginGroup("Alignment");
|
Chris@428
|
56 TransformId id =
|
Chris@428
|
57 settings.value("transform-id",
|
Chris@428
|
58 "vamp:match-vamp-plugin:match:path").toString();
|
Chris@428
|
59 settings.endGroup();
|
Chris@428
|
60 return id;
|
Chris@428
|
61 }
|
Chris@428
|
62
|
Chris@670
|
63 QString
|
Chris@670
|
64 Align::getTuningDifferenceTransformName()
|
Chris@670
|
65 {
|
Chris@670
|
66 QSettings settings;
|
Chris@670
|
67 settings.beginGroup("Alignment");
|
Chris@670
|
68 bool performPitchCompensation =
|
Chris@670
|
69 settings.value("align-pitch-aware", false).toBool();
|
Chris@670
|
70 QString id = "";
|
Chris@671
|
71 if (performPitchCompensation) {
|
Chris@670
|
72 id = settings.value
|
Chris@670
|
73 ("tuning-difference-transform-id",
|
Chris@670
|
74 "vamp:tuning-difference:tuning-difference:tuningfreq")
|
Chris@670
|
75 .toString();
|
Chris@671
|
76 }
|
Chris@670
|
77 settings.endGroup();
|
Chris@670
|
78 return id;
|
Chris@670
|
79 }
|
Chris@670
|
80
|
Chris@428
|
81 bool
|
Chris@428
|
82 Align::canAlign()
|
Chris@428
|
83 {
|
Chris@670
|
84 TransformFactory *factory = TransformFactory::getInstance();
|
Chris@428
|
85 TransformId id = getAlignmentTransformName();
|
Chris@670
|
86 TransformId tdId = getTuningDifferenceTransformName();
|
Chris@670
|
87 return factory->haveTransform(id) &&
|
Chris@670
|
88 (tdId == "" || factory->haveTransform(tdId));
|
Chris@428
|
89 }
|
Chris@428
|
90
|
Chris@420
|
91 bool
|
Chris@670
|
92 Align::alignModelViaTransform(Document *doc, Model *ref, Model *other,
|
Chris@670
|
93 QString &error)
|
Chris@420
|
94 {
|
Chris@670
|
95 QMutexLocker locker (&m_mutex);
|
Chris@670
|
96
|
Chris@420
|
97 RangeSummarisableTimeValueModel *reference = qobject_cast
|
Chris@420
|
98 <RangeSummarisableTimeValueModel *>(ref);
|
Chris@420
|
99
|
Chris@420
|
100 RangeSummarisableTimeValueModel *rm = qobject_cast
|
Chris@420
|
101 <RangeSummarisableTimeValueModel *>(other);
|
Chris@420
|
102
|
Chris@420
|
103 if (!reference || !rm) return false; // but this should have been tested already
|
Chris@420
|
104
|
Chris@670
|
105 // This involves creating either three or four new models:
|
Chris@672
|
106 //
|
Chris@420
|
107 // 1. an AggregateWaveModel to provide the mixdowns of the main
|
Chris@420
|
108 // model and the new model in its two channels, as input to the
|
Chris@420
|
109 // MATCH plugin
|
Chris@672
|
110 //
|
Chris@670
|
111 // 2a. a SparseTimeValueModel which will be automatically created
|
Chris@670
|
112 // by FeatureExtractionModelTransformer when running the
|
Chris@670
|
113 // TuningDifference plugin to receive the relative tuning of the
|
Chris@670
|
114 // second model (if pitch-aware alignment is enabled in the
|
Chris@670
|
115 // preferences)
|
Chris@672
|
116 //
|
Chris@670
|
117 // 2b. a SparseTimeValueModel which will be automatically created
|
Chris@670
|
118 // by FeatureExtractionPluginTransformer when running the MATCH
|
Chris@670
|
119 // plugin to perform alignment (so containing the alignment path)
|
Chris@672
|
120 //
|
Chris@420
|
121 // 3. an AlignmentModel, which stores the path model and carries
|
Chris@420
|
122 // out alignment lookups on it.
|
Chris@672
|
123 //
|
Chris@670
|
124 // The AggregateWaveModel [1] is registered with the document,
|
Chris@670
|
125 // which deletes it when it is invalidated (when one of its
|
Chris@670
|
126 // components is deleted). The SparseTimeValueModel [2a] is reused
|
Chris@670
|
127 // by us when starting the alignment process proper, and is then
|
Chris@670
|
128 // deleted by us. The SparseTimeValueModel [2b] is passed to the
|
Chris@670
|
129 // AlignmentModel, which takes ownership of it. The AlignmentModel
|
Chris@670
|
130 // is attached to the new model we are aligning, which also takes
|
Chris@670
|
131 // ownership of it. The only one of these models that we need to
|
Chris@670
|
132 // delete here is the SparseTimeValueModel [2a].
|
Chris@672
|
133 //
|
Chris@672
|
134 // (We also create a sneaky additional SparseTimeValueModel
|
Chris@672
|
135 // temporarily so we can attach completion information to it -
|
Chris@672
|
136 // this is quite unnecessary from the perspective of simply
|
Chris@672
|
137 // producing the results.)
|
Chris@420
|
138
|
Chris@420
|
139 AggregateWaveModel::ChannelSpecList components;
|
Chris@420
|
140
|
Chris@420
|
141 components.push_back(AggregateWaveModel::ModelChannelSpec
|
Chris@681
|
142 (reference->getId(), -1));
|
Chris@420
|
143
|
Chris@420
|
144 components.push_back(AggregateWaveModel::ModelChannelSpec
|
Chris@681
|
145 (rm->getId(), -1));
|
Chris@420
|
146
|
Chris@665
|
147 AggregateWaveModel *aggregateModel = new AggregateWaveModel(components);
|
Chris@665
|
148 doc->addAggregateModel(aggregateModel);
|
Chris@670
|
149
|
Chris@670
|
150 AlignmentModel *alignmentModel =
|
Chris@670
|
151 new AlignmentModel(reference, other, nullptr);
|
Chris@670
|
152
|
Chris@670
|
153 TransformId tdId = getTuningDifferenceTransformName();
|
Chris@670
|
154
|
Chris@670
|
155 if (tdId == "") {
|
Chris@670
|
156
|
Chris@670
|
157 if (beginTransformDrivenAlignment(aggregateModel, alignmentModel)) {
|
Chris@670
|
158 rm->setAlignment(alignmentModel);
|
Chris@670
|
159 } else {
|
Chris@670
|
160 error = alignmentModel->getError();
|
Chris@670
|
161 delete alignmentModel;
|
Chris@670
|
162 return false;
|
Chris@670
|
163 }
|
Chris@670
|
164
|
Chris@670
|
165 } else {
|
Chris@670
|
166
|
Chris@670
|
167 // Have a tuning-difference transform id, so run it
|
Chris@670
|
168 // asynchronously first
|
Chris@670
|
169
|
Chris@670
|
170 TransformFactory *tf = TransformFactory::getInstance();
|
Chris@670
|
171
|
Chris@670
|
172 Transform transform = tf->getDefaultTransformFor
|
Chris@670
|
173 (tdId, aggregateModel->getSampleRate());
|
Chris@670
|
174
|
Chris@678
|
175 transform.setParameter("maxduration", 60);
|
Chris@678
|
176 transform.setParameter("maxrange", 6);
|
Chris@678
|
177 transform.setParameter("finetuning", false);
|
Chris@671
|
178
|
Chris@670
|
179 SVDEBUG << "Align::alignModel: Tuning difference transform step size " << transform.getStepSize() << ", block size " << transform.getBlockSize() << endl;
|
Chris@670
|
180
|
Chris@670
|
181 ModelTransformerFactory *mtf = ModelTransformerFactory::getInstance();
|
Chris@670
|
182
|
Chris@670
|
183 QString message;
|
Chris@670
|
184 Model *transformOutput = mtf->transform(transform, aggregateModel, message);
|
Chris@670
|
185
|
Chris@670
|
186 SparseTimeValueModel *tdout = dynamic_cast<SparseTimeValueModel *>
|
Chris@670
|
187 (transformOutput);
|
Chris@670
|
188
|
Chris@670
|
189 if (!tdout) {
|
Chris@670
|
190 SVCERR << "Align::alignModel: ERROR: Failed to create tuning-difference output model (no Tuning Difference plugin?)" << endl;
|
Chris@670
|
191 delete tdout;
|
Chris@670
|
192 error = message;
|
Chris@670
|
193 return false;
|
Chris@670
|
194 }
|
Chris@670
|
195
|
Chris@670
|
196 rm->setAlignment(alignmentModel);
|
Chris@665
|
197
|
Chris@670
|
198 connect(tdout, SIGNAL(completionChanged()),
|
Chris@670
|
199 this, SLOT(tuningDifferenceCompletionChanged()));
|
Chris@420
|
200
|
Chris@671
|
201 TuningDiffRec rec;
|
Chris@671
|
202 rec.input = aggregateModel;
|
Chris@671
|
203 rec.alignment = alignmentModel;
|
Chris@671
|
204
|
Chris@677
|
205 connect(aggregateModel, SIGNAL(aboutToBeDeleted()),
|
Chris@677
|
206 this, SLOT(aggregateModelAboutToBeDeleted()));
|
Chris@677
|
207
|
Chris@671
|
208 // This model exists only so that the AlignmentModel can get a
|
Chris@671
|
209 // completion value from somewhere while the tuning difference
|
Chris@671
|
210 // calculation is going on
|
Chris@671
|
211 rec.preparatory = new SparseTimeValueModel
|
Chris@671
|
212 (aggregateModel->getSampleRate(), 1);;
|
Chris@671
|
213 rec.preparatory->setCompletion(0);
|
Chris@671
|
214 alignmentModel->setPathFrom(rec.preparatory);
|
Chris@671
|
215
|
Chris@671
|
216 m_pendingTuningDiffs[tdout] = rec;
|
Chris@670
|
217 }
|
Chris@670
|
218
|
Chris@670
|
219 return true;
|
Chris@670
|
220 }
|
Chris@670
|
221
|
Chris@671
|
222 void
|
Chris@677
|
223 Align::aggregateModelAboutToBeDeleted()
|
Chris@677
|
224 {
|
Chris@677
|
225 SVCERR << "Align::aggregateModelAboutToBeDeleted" << endl;
|
Chris@677
|
226
|
Chris@677
|
227 QObject *s = sender();
|
Chris@677
|
228 AggregateWaveModel *awm = qobject_cast<AggregateWaveModel *>(s);
|
Chris@677
|
229 if (!awm) return;
|
Chris@677
|
230 QMutexLocker locker(&m_mutex);
|
Chris@677
|
231
|
Chris@677
|
232 SVCERR << "Align::aggregateModelAboutToBeDeleted: awm = " << awm
|
Chris@677
|
233 << endl;
|
Chris@677
|
234
|
Chris@677
|
235 for (const auto &p : m_pendingTuningDiffs) {
|
Chris@677
|
236 if (p.second.input == awm) {
|
Chris@677
|
237 SVCERR << "we have a record of this, getting rid of it" << endl;
|
Chris@677
|
238 m_pendingTuningDiffs.erase(p.first);
|
Chris@677
|
239 return;
|
Chris@677
|
240 }
|
Chris@677
|
241 }
|
Chris@677
|
242 }
|
Chris@677
|
243
|
Chris@677
|
244 void
|
Chris@671
|
245 Align::tuningDifferenceCompletionChanged()
|
Chris@671
|
246 {
|
Chris@671
|
247 QMutexLocker locker (&m_mutex);
|
Chris@671
|
248
|
Chris@671
|
249 SparseTimeValueModel *td = qobject_cast<SparseTimeValueModel *>(sender());
|
Chris@671
|
250 if (!td) return;
|
Chris@671
|
251
|
Chris@671
|
252 if (m_pendingTuningDiffs.find(td) == m_pendingTuningDiffs.end()) {
|
Chris@671
|
253 SVCERR << "ERROR: Align::tuningDifferenceCompletionChanged: Model "
|
Chris@671
|
254 << td << " not found in pending tuning diff map!" << endl;
|
Chris@671
|
255 return;
|
Chris@671
|
256 }
|
Chris@671
|
257
|
Chris@671
|
258 TuningDiffRec rec = m_pendingTuningDiffs[td];
|
Chris@671
|
259
|
Chris@671
|
260 int completion = 0;
|
Chris@671
|
261 bool done = td->isReady(&completion);
|
Chris@671
|
262
|
Chris@674
|
263 // SVCERR << "Align::tuningDifferenceCompletionChanged: done = " << done << ", completion = " << completion << endl;
|
Chris@671
|
264
|
Chris@671
|
265 if (!done) {
|
Chris@671
|
266 // This will be the completion the alignment model reports,
|
Chris@671
|
267 // before the alignment actually begins. It goes up from 0 to
|
Chris@671
|
268 // 99 (not 100!) and then back to 0 again when we start
|
Chris@671
|
269 // calculating the actual path in the following phase
|
Chris@671
|
270 int clamped = (completion == 100 ? 99 : completion);
|
Chris@674
|
271 // SVCERR << "Align::tuningDifferenceCompletionChanged: setting rec.preparatory completion to " << clamped << endl;
|
Chris@671
|
272 rec.preparatory->setCompletion(clamped);
|
Chris@671
|
273 return;
|
Chris@671
|
274 }
|
Chris@671
|
275
|
Chris@671
|
276 float tuningFrequency = 440.f;
|
Chris@671
|
277
|
Chris@671
|
278 if (!td->isEmpty()) {
|
Chris@671
|
279 tuningFrequency = td->getAllEvents()[0].getValue();
|
Chris@671
|
280 SVCERR << "Align::tuningDifferenceCompletionChanged: Reported tuning frequency = " << tuningFrequency << endl;
|
Chris@671
|
281 } else {
|
Chris@671
|
282 SVCERR << "Align::tuningDifferenceCompletionChanged: No tuning frequency reported" << endl;
|
Chris@671
|
283 }
|
Chris@671
|
284
|
Chris@671
|
285 m_pendingTuningDiffs.erase(td);
|
Chris@671
|
286 td->aboutToDelete();
|
Chris@671
|
287 delete td;
|
Chris@671
|
288
|
Chris@671
|
289 rec.alignment->setPathFrom(nullptr);
|
Chris@671
|
290
|
Chris@671
|
291 beginTransformDrivenAlignment
|
Chris@671
|
292 (rec.input, rec.alignment, tuningFrequency);
|
Chris@671
|
293 }
|
Chris@671
|
294
|
Chris@670
|
295 bool
|
Chris@670
|
296 Align::beginTransformDrivenAlignment(AggregateWaveModel *aggregateModel,
|
Chris@670
|
297 AlignmentModel *alignmentModel,
|
Chris@670
|
298 float tuningFrequency)
|
Chris@670
|
299 {
|
Chris@428
|
300 TransformId id = getAlignmentTransformName();
|
Chris@420
|
301
|
Chris@420
|
302 TransformFactory *tf = TransformFactory::getInstance();
|
Chris@420
|
303
|
Chris@420
|
304 Transform transform = tf->getDefaultTransformFor
|
Chris@420
|
305 (id, aggregateModel->getSampleRate());
|
Chris@420
|
306
|
Chris@420
|
307 transform.setStepSize(transform.getBlockSize()/2);
|
Chris@420
|
308 transform.setParameter("serialise", 1);
|
Chris@420
|
309 transform.setParameter("smooth", 0);
|
Chris@420
|
310
|
Chris@670
|
311 if (tuningFrequency != 0.f) {
|
Chris@670
|
312 transform.setParameter("freq2", tuningFrequency);
|
Chris@670
|
313 }
|
Chris@670
|
314
|
Chris@420
|
315 SVDEBUG << "Align::alignModel: Alignment transform step size " << transform.getStepSize() << ", block size " << transform.getBlockSize() << endl;
|
Chris@420
|
316
|
Chris@420
|
317 ModelTransformerFactory *mtf = ModelTransformerFactory::getInstance();
|
Chris@420
|
318
|
Chris@420
|
319 QString message;
|
Chris@670
|
320 Model *transformOutput = mtf->transform
|
Chris@670
|
321 (transform, aggregateModel, message);
|
Chris@420
|
322
|
Chris@420
|
323 if (!transformOutput) {
|
Chris@420
|
324 transform.setStepSize(0);
|
Chris@670
|
325 transformOutput = mtf->transform
|
Chris@670
|
326 (transform, aggregateModel, message);
|
Chris@420
|
327 }
|
Chris@420
|
328
|
Chris@420
|
329 SparseTimeValueModel *path = dynamic_cast<SparseTimeValueModel *>
|
Chris@420
|
330 (transformOutput);
|
Chris@420
|
331
|
Chris@670
|
332 //!!! callers will need to be updated to get error from
|
Chris@670
|
333 //!!! alignment model after initial call
|
Chris@670
|
334
|
Chris@420
|
335 if (!path) {
|
Chris@649
|
336 SVCERR << "Align::alignModel: ERROR: Failed to create alignment path (no MATCH plugin?)" << endl;
|
Chris@420
|
337 delete transformOutput;
|
Chris@670
|
338 alignmentModel->setError(message);
|
Chris@420
|
339 return false;
|
Chris@420
|
340 }
|
Chris@420
|
341
|
Chris@420
|
342 path->setCompletion(0);
|
Chris@670
|
343 alignmentModel->setPathFrom(path);
|
Chris@420
|
344
|
Chris@428
|
345 connect(alignmentModel, SIGNAL(completionChanged()),
|
Chris@428
|
346 this, SLOT(alignmentCompletionChanged()));
|
Chris@420
|
347
|
Chris@420
|
348 return true;
|
Chris@420
|
349 }
|
Chris@420
|
350
|
Chris@428
|
351 void
|
Chris@428
|
352 Align::alignmentCompletionChanged()
|
Chris@428
|
353 {
|
Chris@670
|
354 QMutexLocker locker (&m_mutex);
|
Chris@670
|
355
|
Chris@428
|
356 AlignmentModel *am = qobject_cast<AlignmentModel *>(sender());
|
Chris@428
|
357 if (!am) return;
|
Chris@428
|
358 if (am->isReady()) {
|
Chris@428
|
359 disconnect(am, SIGNAL(completionChanged()),
|
Chris@428
|
360 this, SLOT(alignmentCompletionChanged()));
|
Chris@428
|
361 emit alignmentComplete(am);
|
Chris@428
|
362 }
|
Chris@428
|
363 }
|
Chris@428
|
364
|
Chris@420
|
365 bool
|
Chris@670
|
366 Align::alignModelViaProgram(Document *, Model *ref, Model *other,
|
Chris@670
|
367 QString program, QString &error)
|
Chris@420
|
368 {
|
Chris@670
|
369 QMutexLocker locker (&m_mutex);
|
Chris@670
|
370
|
Chris@420
|
371 WaveFileModel *reference = qobject_cast<WaveFileModel *>(ref);
|
Chris@420
|
372 WaveFileModel *rm = qobject_cast<WaveFileModel *>(other);
|
Chris@420
|
373
|
Chris@515
|
374 if (!reference || !rm) {
|
Chris@515
|
375 return false; // but this should have been tested already
|
Chris@515
|
376 }
|
Chris@420
|
377
|
Chris@636
|
378 while (!reference->isReady(nullptr) || !rm->isReady(nullptr)) {
|
Chris@430
|
379 qApp->processEvents();
|
Chris@430
|
380 }
|
Chris@430
|
381
|
Chris@420
|
382 // Run an external program, passing to it paths to the main
|
Chris@420
|
383 // model's audio file and the new model's audio file. It returns
|
Chris@420
|
384 // the path in CSV form through stdout.
|
Chris@420
|
385
|
Chris@515
|
386 ReadOnlyWaveFileModel *roref = qobject_cast<ReadOnlyWaveFileModel *>(reference);
|
Chris@515
|
387 ReadOnlyWaveFileModel *rorm = qobject_cast<ReadOnlyWaveFileModel *>(rm);
|
Chris@515
|
388 if (!roref || !rorm) {
|
Chris@649
|
389 SVCERR << "ERROR: Align::alignModelViaProgram: Can't align non-read-only models via program (no local filename available)" << endl;
|
Chris@515
|
390 return false;
|
Chris@515
|
391 }
|
Chris@515
|
392
|
Chris@515
|
393 QString refPath = roref->getLocalFilename();
|
Chris@515
|
394 QString otherPath = rorm->getLocalFilename();
|
Chris@420
|
395
|
Chris@420
|
396 if (refPath == "" || otherPath == "") {
|
Chris@670
|
397 error = "Failed to find local filepath for wave-file model";
|
Chris@595
|
398 return false;
|
Chris@420
|
399 }
|
Chris@420
|
400
|
Chris@665
|
401 AlignmentModel *alignmentModel =
|
Chris@665
|
402 new AlignmentModel(reference, other, nullptr);
|
Chris@423
|
403 rm->setAlignment(alignmentModel);
|
Chris@423
|
404
|
Chris@423
|
405 QProcess *process = new QProcess;
|
Chris@420
|
406 QStringList args;
|
Chris@420
|
407 args << refPath << otherPath;
|
Chris@423
|
408
|
Chris@423
|
409 connect(process, SIGNAL(finished(int, QProcess::ExitStatus)),
|
Chris@423
|
410 this, SLOT(alignmentProgramFinished(int, QProcess::ExitStatus)));
|
Chris@420
|
411
|
Chris@670
|
412 m_pendingProcesses[process] = alignmentModel;
|
Chris@423
|
413 process->start(program, args);
|
Chris@420
|
414
|
Chris@423
|
415 bool success = process->waitForStarted();
|
Chris@423
|
416
|
Chris@423
|
417 if (!success) {
|
Chris@649
|
418 SVCERR << "ERROR: Align::alignModelViaProgram: Program did not start"
|
Chris@649
|
419 << endl;
|
Chris@670
|
420 error = "Alignment program could not be started";
|
Chris@670
|
421 m_pendingProcesses.erase(process);
|
Chris@636
|
422 rm->setAlignment(nullptr); // deletes alignmentModel as well
|
Chris@423
|
423 delete process;
|
Chris@423
|
424 }
|
Chris@423
|
425
|
Chris@423
|
426 return success;
|
Chris@423
|
427 }
|
Chris@423
|
428
|
Chris@423
|
429 void
|
Chris@423
|
430 Align::alignmentProgramFinished(int exitCode, QProcess::ExitStatus status)
|
Chris@423
|
431 {
|
Chris@670
|
432 QMutexLocker locker (&m_mutex);
|
Chris@670
|
433
|
Chris@649
|
434 SVCERR << "Align::alignmentProgramFinished" << endl;
|
Chris@423
|
435
|
Chris@423
|
436 QProcess *process = qobject_cast<QProcess *>(sender());
|
Chris@423
|
437
|
Chris@670
|
438 if (m_pendingProcesses.find(process) == m_pendingProcesses.end()) {
|
Chris@649
|
439 SVCERR << "ERROR: Align::alignmentProgramFinished: Process " << process
|
Chris@649
|
440 << " not found in process model map!" << endl;
|
Chris@423
|
441 return;
|
Chris@423
|
442 }
|
Chris@423
|
443
|
Chris@670
|
444 AlignmentModel *alignmentModel = m_pendingProcesses[process];
|
Chris@423
|
445
|
Chris@423
|
446 if (exitCode == 0 && status == 0) {
|
Chris@420
|
447
|
Chris@595
|
448 CSVFormat format;
|
Chris@595
|
449 format.setModelType(CSVFormat::TwoDimensionalModel);
|
Chris@595
|
450 format.setTimingType(CSVFormat::ExplicitTiming);
|
Chris@595
|
451 format.setTimeUnits(CSVFormat::TimeSeconds);
|
Chris@595
|
452 format.setColumnCount(2);
|
Chris@425
|
453 // The output format has time in the reference file first, and
|
Chris@425
|
454 // time in the "other" file in the second column. This is a
|
Chris@425
|
455 // more natural approach for a command-line alignment tool,
|
Chris@425
|
456 // but it's the opposite of what we expect for native
|
Chris@425
|
457 // alignment paths, which map from "other" file to
|
Chris@425
|
458 // reference. These column purpose settings reflect that.
|
Chris@595
|
459 format.setColumnPurpose(1, CSVFormat::ColumnStartTime);
|
Chris@595
|
460 format.setColumnPurpose(0, CSVFormat::ColumnValue);
|
Chris@595
|
461 format.setAllowQuoting(false);
|
Chris@595
|
462 format.setSeparator(',');
|
Chris@420
|
463
|
Chris@595
|
464 CSVFileReader reader(process, format, alignmentModel->getSampleRate());
|
Chris@595
|
465 if (!reader.isOK()) {
|
Chris@649
|
466 SVCERR << "ERROR: Align::alignmentProgramFinished: Failed to parse output"
|
Chris@649
|
467 << endl;
|
Chris@670
|
468 alignmentModel->setError
|
Chris@670
|
469 (QString("Failed to parse output of program: %1")
|
Chris@670
|
470 .arg(reader.getError()));
|
Chris@423
|
471 goto done;
|
Chris@595
|
472 }
|
Chris@420
|
473
|
Chris@595
|
474 Model *csvOutput = reader.load();
|
Chris@420
|
475
|
Chris@595
|
476 SparseTimeValueModel *path = qobject_cast<SparseTimeValueModel *>(csvOutput);
|
Chris@595
|
477 if (!path) {
|
Chris@649
|
478 SVCERR << "ERROR: Align::alignmentProgramFinished: Output did not convert to sparse time-value model"
|
Chris@649
|
479 << endl;
|
Chris@670
|
480 alignmentModel->setError
|
Chris@670
|
481 ("Output of program did not produce sparse time-value model");
|
Chris@423
|
482 goto done;
|
Chris@595
|
483 }
|
Chris@420
|
484
|
Chris@649
|
485 if (path->isEmpty()) {
|
Chris@649
|
486 SVCERR << "ERROR: Align::alignmentProgramFinished: Output contained no mappings"
|
Chris@649
|
487 << endl;
|
Chris@670
|
488 alignmentModel->setError
|
Chris@670
|
489 ("Output of alignment program contained no mappings");
|
Chris@423
|
490 goto done;
|
Chris@595
|
491 }
|
Chris@420
|
492
|
Chris@649
|
493 SVCERR << "Align::alignmentProgramFinished: Setting alignment path ("
|
Chris@650
|
494 << path->getEventCount() << " point(s))" << endl;
|
Chris@650
|
495
|
Chris@423
|
496 alignmentModel->setPathFrom(path);
|
Chris@420
|
497
|
Chris@428
|
498 emit alignmentComplete(alignmentModel);
|
Chris@428
|
499
|
Chris@420
|
500 } else {
|
Chris@649
|
501 SVCERR << "ERROR: Align::alignmentProgramFinished: Aligner program "
|
Chris@649
|
502 << "failed: exit code " << exitCode << ", status " << status
|
Chris@649
|
503 << endl;
|
Chris@670
|
504 alignmentModel->setError
|
Chris@670
|
505 ("Aligner process returned non-zero exit status");
|
Chris@420
|
506 }
|
Chris@420
|
507
|
Chris@423
|
508 done:
|
Chris@670
|
509 m_pendingProcesses.erase(process);
|
Chris@423
|
510 delete process;
|
Chris@420
|
511 }
|
Chris@420
|
512
|