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1 \comment This is the source for the FFTW FAQ list, in
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2 \comment the Bizarre Format With No Name. It is turned into Lout
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3 \comment input, HTML, plain ASCII and an Info document by a Perl script.
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4 \comment
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5 \comment The format and scripts come from the Linux FAQ, by
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6 \comment Ian Jackson.
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7 \set brieftitle FFTW FAQ
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8 \set author <A href="http://www.fftw.org">Matteo Frigo and Steven G. Johnson</A> / <A href="mailto:fftw@fftw.org">fftw@fftw.org</A>
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9 \set authormail fftw@fftw.org
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10 \set title FFTW Frequently Asked Questions with Answers
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11 \set copyholder Matteo Frigo and Massachusetts Institute of Technology
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12 \call-html startup html.refs2
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13 \copyto ASCII
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14 FFTW FREQUENTLY ASKED QUESTIONS WITH ANSWERS
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15 `date '+%d %h %Y'`
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16 Matteo Frigo
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17 Steven G. Johnson
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18 <fftw@fftw.org>
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19
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20 \endcopy
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21 \copyto INFO
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22 START-INFO-DIR-ENTRY
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23 * FFTW FAQ: (fftw-faq). FFTW Frequently Asked Questions with Answers.
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24 END-INFO-DIR-ENTRY
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25
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26
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27 File: $prefix.info, Node: Top, Next: Question 1.1, Up: (dir)
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28
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29 FFTW FREQUENTLY ASKED QUESTIONS WITH ANSWERS
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30 `date '+%d %h %Y'`
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31 Matteo Frigo
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32 Steven G. Johnson
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33 <fftw@fftw.org>
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34
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35 \endcopy
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36
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37 This is the list of Frequently Asked Questions about FFTW, a
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38 collection of fast C routines for computing the Discrete Fourier
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39 Transform in one or more dimensions.
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40
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41 \section Index
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42
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43 \index
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44
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45 \comment ######################################################################
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46
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47 \section Introduction and General Information
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48
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49 \question 26aug:whatisfftw What is FFTW?
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50
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51 FFTW is a free collection of fast C routines for computing the
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52 Discrete Fourier Transform in one or more dimensions. It includes
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53 complex, real, symmetric, and parallel transforms, and can handle
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54 arbitrary array sizes efficiently. FFTW is typically faster than
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55 other publically-available FFT implementations, and is even
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56 competitive with vendor-tuned libraries. (See our web page for
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57 extensive benchmarks.) To achieve this performance, FFTW uses novel
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58 code-generation and runtime self-optimization techniques (along with
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59 many other tricks).
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60
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61 \question 26aug:whereisfftw How do I obtain FFTW?
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62
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63 FFTW can be found at \docref{the FFTW web page\}. You can also
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64 retrieve it from \ftpon ftp.fftw.org in \ftpin /pub/fftw.
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65
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66 \question 26aug:isfftwfree Is FFTW free software?
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67
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68 Starting with version 1.3, FFTW is Free Software in the technical
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69 sense defined by the Free Software Foundation (see \docref{Categories
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70 of Free and Non-Free Software\}), and is distributed under the terms
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71 of the GNU General Public License. Previous versions of FFTW were
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72 distributed without fee for noncommercial use, but were not
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73 technically ``free.''
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74
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75 Non-free licenses for FFTW are also available that permit different
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76 terms of use than the GPL.
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77
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78 \question 10apr:nonfree What is this about non-free licenses?
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79
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80 The non-free licenses are for companies that wish to use FFTW in their
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81 products but are unwilling to release their software under the GPL
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82 (which would require them to release source code and allow free
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83 redistribution). Such users can purchase an unlimited-use license
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84 from MIT. Contact us for more details.
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85
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86 We could instead have released FFTW under the LGPL, or even disallowed
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87 non-Free usage. Suffice it to say, however, that MIT owns the
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88 copyright to FFTW and they only let us GPL it because we convinced
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89 them that it would neither affect their licensing revenue nor irritate
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90 existing licensees.
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91
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92 \question 24oct:west In the West? I thought MIT was in the East?
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93
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94 Not to an Italian. You could say that we're a Spaghetti Western
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95 (with apologies to Sergio Leone).
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96
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97 \comment ######################################################################
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98
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99 \section Installing FFTW
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100
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101 \question 26aug:systems Which systems does FFTW run on?
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102
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103 FFTW is written in ANSI C, and should work on any system with a decent
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104 C compiler. (See also \qref runOnWindows, \qref compilerCrashes.)
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105 FFTW can also take advantage of certain hardware-specific features,
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106 such as cycle counters and SIMD instructions, but this is optional.
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107
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108 \question 26aug:runOnWindows Does FFTW run on Windows?
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109
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110 Yes, many people have reported successfully using FFTW on Windows with
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111 various compilers. FFTW was not developed on Windows, but the source
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112 code is essentially straight ANSI C. See also the \docref{FFTW
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113 Windows installation notes\}, \qref compilerCrashes, and \qref
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114 vbetalia.
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115
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116 \question 26aug:compilerCrashes My compiler has trouble with FFTW.
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117
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118 Complain fiercely to the vendor of the compiler.
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119
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120 We have successfully used \courier{gcc\} 3.2.x on x86 and PPC, a
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121 recent Compaq C compiler for Alpha, version 6 of IBM's \courier{xlc\}
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122 compiler for AIX, Intel's \courier{icc\} versions 5-7, and Sun
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123 WorkShop \courier{cc\} version 6.
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124
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125 FFTW is likely to push compilers to their limits, however, and several
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126 compiler bugs have been exposed by FFTW. A partial list follows.
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127
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128 \courier{gcc\} 2.95.x for Solaris/SPARC produces incorrect code for
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129 the test program (workaround: recompile the \courier{libbench2\}
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130 directory with \courier{-O2\}).
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131
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132 NetBSD/macppc 1.6 comes with a \courier{gcc\} version that also
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133 miscompiles the test program. (Please report a workaround if you know
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134 one.)
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135
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136 \courier{gcc\} 3.2.3 for ARM reportedly crashes during compilation.
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137 This bug is reportedly fixed in later versions of \courier{gcc\}.
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138
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139 Versions 8.0 and 8.1 of Intel's \courier{icc\} falsely claim to be
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140 \courier{gcc\}, so you should specify \courier{CC="icc -no-gcc"\};
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141 this is automatic in FFTW 3.1. \courier{icc-8.0.066\} reportely
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142 produces incorrect code for FFTW 2.1.5, but is fixed in version 8.1.
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143 \courier{icc-7.1\} compiler build 20030402Z appears to produce
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144 incorrect dependencies, causing the compilation to fail.
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145 \courier{icc-7.1\} build 20030307Z appears to work fine. (Use
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146 \courier{icc -V\} to check which build you have.) As of 2003/04/18,
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147 build 20030402Z appears not to be available any longer on Intel's
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148 website, whereas the older build 20030307Z is available.
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149
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150 \courier{ranlib\} of GNU \courier{binutils\} 2.9.1 on Irix has been
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151 observed to corrupt the FFTW libraries, causing a link failure when
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152 FFTW is compiled. Since \courier{ranlib\} is completely superfluous
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153 on Irix, we suggest deleting it from your system and replacing it with
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154 a symbolic link to \courier{/bin/echo\}.
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155
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156 If support for SIMD instructions is enabled in FFTW, further compiler
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157 problems may appear:
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158
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159 \courier{gcc\} 3.4.[0123] for x86 produces incorrect SSE2 code for
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160 FFTW when \courier{-O2\} (the best choice for FFTW) is used, causing
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161 FFTW to crash (\courier{make check\} crashes). This bug is fixed in
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162 \courier{gcc\} 3.4.4. On x86_64 (amd64/em64t), \courier{gcc\} 3.4.4
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163 reportedly still has a similar problem, but this is fixed as of
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164 \courier{gcc\} 3.4.6.
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165
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166 \courier{gcc-3.2\} for x86 produces incorrect SIMD code if
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167 \courier{-O3\} is used. The same compiler produces incorrect SIMD
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168 code if no optimization is used, too. When using \courier{gcc-3.2\},
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169 it is a good idea not to change the default \courier{CFLAGS\} selected
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170 by the \courier{configure\} script.
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171
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172 Some 3.0.x and 3.1.x versions of \courier{gcc\} on \courier{x86\} may
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173 crash. \courier{gcc\} so-called 2.96 shipping with RedHat 7.3 crashes
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174 when compiling SIMD code. In both cases, please upgrade to
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175 \courier{gcc-3.2\} or later.
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176
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177 Intel's \courier{icc\} 6.0 misaligns SSE constants, but FFTW has a
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178 workaround. \courier{icc\} 8.x fails to compile FFTW 3.0.x because it
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179 falsely claims to be \courier{gcc\}; we believe this to be a bug in
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180 \courier{icc\}, but FFTW 3.1 has a workaround.
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181
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182 Visual C++ 2003 reportedly produces incorrect code for SSE/SSE2 when
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183 compiling FFTW. This bug was reportedly fixed in VC++ 2005;
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184 alternatively, you could switch to the Intel compiler. VC++ 6.0 also
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185 reportedly produces incorrect code for the file
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186 \courier{reodft11e-r2hc-odd.c\} unless optimizations are disabled for
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187 that file.
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188
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189 \courier{gcc\} 2.95 on MacOS X miscompiles AltiVec code (fixed in
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190 later versions). \courier{gcc\} 3.2.x miscompiles AltiVec
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191 permutations, but FFTW has a workaround. \courier{gcc\} 4.0.1 on
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192 MacOS for Intel crashes when compiling FFTW; a workaround is to
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193 compile one file without optimization: \courier{cd kernel; make
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194 CFLAGS=" " trig.lo\}.
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195
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196 \courier{gcc\} 4.1.1 reportedly crashes when compiling FFTW for MIPS;
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197 the workaround is to compile the file it crashes on
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198 (\courier{t2_64.c\}) with a lower optimization level.
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199
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200 \courier{gcc\} versions 4.1.2 to 4.2.0 for x86 reportedly miscompile
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201 FFTW 3.1's test program, causing \courier{make check\} to crash
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202 (\courier{gcc\} bug #26528). The bug was reportedly fixed in
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203 \courier{gcc\} version 4.2.1 and later. A workaround is to compile
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204 \courier{libbench2/verify-lib.c\} without optimization.
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205
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206 \question 26aug:solarisSucks FFTW does not compile on Solaris, complaining about \courier{const\}.
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207
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208 We know that at least on Solaris 2.5.x with Sun's compilers 4.2 you
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209 might get error messages from \courier{make\} such as
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210
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211 \courier{"./fftw.h", line 88: warning: const is a keyword in ANSI C\}
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212
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213 This is the case when the \courier{configure\} script reports that
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214 \courier{const\} does not work:
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215
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216 \courier{checking for working const... (cached) no\}
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217
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218 You should be aware that Solaris comes with two compilers, namely,
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219 \courier{/opt/SUNWspro/SC4.2/bin/cc\} and \courier{/usr/ucb/cc\}. The
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220 latter compiler is non-ANSI. Indeed, it is a perverse shell script
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221 that calls the real compiler in non-ANSI mode. In order
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222 to compile FFTW, change your path so that the right \courier{cc\}
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223 is used.
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224
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225 To know whether your compiler is the right one, type
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226 \courier{cc -V\}. If the compiler prints ``\courier{ucbcc\}'',
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227 as in
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228
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229 \courier{ucbcc: WorkShop Compilers 4.2 30 Oct 1996 C 4.2\}
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230
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231 then the compiler is wrong. The right message is something like
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232
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233 \courier{cc: WorkShop Compilers 4.2 30 Oct 1996 C 4.2\}
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234
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235 \question 19mar:3dnow What's the difference between \courier{--enable-3dnow\} and \courier{--enable-k7\}?
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236
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237 \courier{--enable-k7\} enables 3DNow! instructions on K7 processors
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238 (AMD Athlon and its variants). K7 support is provided by assembly
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239 routines generated by a special purpose compiler.
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240 As of fftw-3.2, --enable-k7 is no longer supported.
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241
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242 \courier{--enable-3dnow\} enables generic 3DNow! support using
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243 \courier{gcc\} builtin functions. This works on earlier AMD
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244 processors, but it is not as fast as our special assembly routines.
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245 As of fftw-3.1, --enable-3dnow is no longer supported.
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246
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247 \question 18apr:fma What's the difference between the fma and the non-fma versions?
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248
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249 The fma version tries to exploit the fused multiply-add instructions
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250 implemented in many processors such as PowerPC, ia-64, and MIPS. The
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251 two FFTW packages are otherwise identical. In FFTW 3.1, the fma and
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252 non-fma versions were merged together into a single package, and the
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253 \courier{configure\} script attempts to automatically guess which
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254 version to use.
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255
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256 The FFTW 3.1 \courier{configure\} script enables fma by default on
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257 PowerPC, Itanium, and PA-RISC, and disables it otherwise. You can
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258 force one or the other by using the \courier{--enable-fma\} or
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259 \courier{--disable-fma\} flag for \courier{configure\}.
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260
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261 Definitely use fma if you have a PowerPC-based system with
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262 \courier{gcc\} (or IBM \courier{xlc\}). This includes all GNU/Linux
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263 systems for PowerPC and the older PowerPC-based MacOS systems. Also
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264 use it on PA-RISC and Itanium with the HP/UX compiler.
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265
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266 Definitely do not use the fma version if you have an ia-32 processor
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267 (Intel, AMD, MacOS on Intel, etcetera).
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268
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269 For other architectures/compilers, the situation is not so clear. For
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270 example, ia-64 has the fma instruction, but \courier{gcc-3.2\} appears
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271 not to exploit it correctly. Other compilers may do the right thing,
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272 but we have not tried them. Please send us your feedback so that we
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273 can update this FAQ entry.
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274
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275 \question 26aug:languages Which language is FFTW written in?
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276
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277 FFTW is written in ANSI C. Most of the code, however, was
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278 automatically generated by a program called \courier{genfft\}, written
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279 in the Objective Caml dialect of ML. You do not need to know ML or to
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280 have an Objective Caml compiler in order to use FFTW.
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281
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282 \courier{genfft\} is provided with the FFTW sources, which means that
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283 you can play with the code generator if you want. In this case, you
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284 need a working Objective Caml system. Objective Caml is available
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285 from \docref{the Caml web page\}.
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286
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287 \question 26aug:fortran Can I call FFTW from Fortran?
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288
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289 Yes, FFTW (versions 1.3 and higher) contains a Fortran-callable
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290 interface, documented in the FFTW manual.
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291
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292 By default, FFTW configures its Fortran interface to work with the
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293 first compiler it finds, e.g. \courier{g77\}. To configure for a
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294 different, incompatible Fortran compiler \courier{foobar\}, use
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295 \courier{./configure F77=foobar\} when installing FFTW. (In the case
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296 of \courier{g77\}, however, FFTW 3.x also includes an extra set of
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297 Fortran-callable routines with one less underscore at the end of
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298 identifiers, which should cover most other Fortran compilers on Linux
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299 at least.)
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300
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301 \question 26aug:cplusplus Can I call FFTW from C++?
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302
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303 Most definitely. FFTW should compile and/or link under any C++
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304 compiler. Moreover, it is likely that the C++ \courier{<complex>\}
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305 template class is bit-compatible with FFTW's complex-number format
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306 (see the FFTW manual for more details).
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307
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308 \question 26aug:whynotfortran Why isn't FFTW written in Fortran/C++?
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309
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310 Because we don't like those languages, and neither approaches the
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311 portability of C.
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312
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313 \question 29mar:singleprec How do I compile FFTW to run in single precision?
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314
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315 On a Unix system: \courier{configure --enable-float\}. On a non-Unix
|
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316 system: edit \courier{config.h\} to \courier{#define\} the symbol
|
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317 \courier{FFTW_SINGLE\} (for FFTW 3.x). In both cases, you must then
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318 recompile FFTW. In FFTW 3, all FFTW identifiers will then begin with
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319 \courier{fftwf_\} instead of \courier{fftw_\}.
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320
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321 \question 28mar:64bitk7 --enable-k7 does not work on x86-64
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322
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323 Support for --enable-k7 was discontinued in fftw-3.2.
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324
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325 The fftw-3.1 release supports --enable-k7. This option only works on
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326 32-bit x86 machines that implement 3DNow!, including the AMD Athlon
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327 and the AMD Opteron in 32-bit mode. --enable-k7 does not work on AMD
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328 Opteron in 64-bit mode. Use --enable-sse for x86-64 machines.
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329
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330 FFTW supports 3DNow! by means of assembly code generated by a
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331 special-purpose compiler. It is hard to produce assembly code that
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332 works in both 32-bit and 64-bit mode.
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333
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334 \comment ######################################################################
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335
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336 \section Using FFTW
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337
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338 \question 15mar:fftw2to3 Why not support the FFTW 2 interface in FFTW 3?
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339
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340 FFTW 3 has semantics incompatible with earlier versions: its plans can
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341 only be used for a given stride, multiplicity, and other
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342 characteristics of the input and output arrays; these stronger
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343 semantics are necessary for performance reasons. Thus, it is
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344 impossible to efficiently emulate the older interface (whose plans can
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345 be used for any transform of the same size). We believe that it
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346 should be possible to upgrade most programs without any difficulty,
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347 however.
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348
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349 \question 20mar:planperarray Why do FFTW 3 plans encapsulate the input/output arrays and not just the algorithm?
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350
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351 There are several reasons:
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352
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353 \call startlist
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354 \call item
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355 It was important for performance reasons that the plan be specific to
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356 array characteristics like the stride (and alignment, for SIMD), and
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357 requiring that the user maintain these invariants is error prone.
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358 \call item
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359 In most high-performance applications, as far as we can tell, you are
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360 usually transforming the same array over and over, so FFTW's semantics
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361 should not be a burden.
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362 \call item
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363 If you need to transform another array of the same size, creating a
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364 new plan once the first exists is a cheap operation.
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365 \call item
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366 If you need to transform many arrays of the same size at once, you
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367 should really use the \courier{plan_many\} routines in FFTW's "advanced"
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368 interface.
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369 \call item
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370 If the abovementioned array characteristics are the same, you are
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371 willing to pay close attention to the documentation, and you really
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372 need to, we provide a "new-array execution" interface to apply a plan
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373 to a new array.
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374 \call endlist
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375
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376 \question 25may:slow FFTW seems really slow.
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377
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378 You are probably recreating the plan before every transform, rather
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379 than creating it once and reusing it for all transforms of the same
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380 size. FFTW is designed to be used in the following way:
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381
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382 \call startlist
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383 \call item
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384 First, you create a plan. This will take several seconds.
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385 \call item
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386 Then, you reuse the plan many times to perform FFTs. These are fast.
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387 \call endlist
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388
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389 If you don't need to compute many transforms and the time for the
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390 planner is significant, you have two options. First, you can use the
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391 \courier{FFTW_ESTIMATE\} option in the planner, which uses heuristics
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392 instead of runtime measurements and produces a good plan in a short
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393 time. Second, you can use the wisdom feature to precompute the plan;
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394 see \qref savePlans
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395
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396 \question 22oct:slows FFTW slows down after repeated calls.
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397
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398 Probably, NaNs or similar are creeping into your data, and the
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399 slowdown is due to the resulting floating-point exceptions. For
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400 example, be aware that repeatedly FFTing the same array is a diverging
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401 process (because FFTW computes the unnormalized transform).
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402
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403 \question 22oct:segfault An FFTW routine is crashing when I call it.
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404
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405 Did the FFTW test programs pass (\courier{make check\}, or \courier{cd
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406 tests; make bigcheck\} if you want to be paranoid)? If so, you almost
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407 certainly have a bug in your own code. For example, you could be
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408 passing invalid arguments (such as wrongly-sized arrays) to FFTW, or
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409 you could simply have memory corruption elsewhere in your program that
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410 causes random crashes later on. Please don't complain to us unless
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411 you can come up with a minimal self-contained program (preferably
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412 under 30 lines) that illustrates the problem.
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413
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414 \question 22oct:fortran64 My Fortran program crashes when calling FFTW.
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415
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416 As described in the manual, on 64-bit machines you must store the
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417 plans in variables large enough to hold a pointer, for example
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418 \courier{integer*8\}. We recommend using \courier{integer*8\} on
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419 32-bit machines as well, to simplify porting.
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420
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421 \question 24mar:conventions FFTW gives results different from my old FFT.
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422
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423 People follow many different conventions for the DFT, and you should
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424 be sure to know the ones that we use (described in the FFTW manual).
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425 In particular, you should be aware that the
|
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426 \courier{FFTW_FORWARD\}/\courier{FFTW_BACKWARD\} directions correspond
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427 to signs of -1/+1 in the exponent of the DFT definition.
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428 (\italic{Numerical Recipes\} uses the opposite convention.)
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429
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430 You should also know that we compute an unnormalized transform. In
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431 contrast, Matlab is an example of program that computes a normalized
|
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432 transform. See \qref whyscaled.
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433
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434 Finally, note that floating-point arithmetic is not exact, so
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435 different FFT algorithms will give slightly different results (on the
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436 order of the numerical accuracy; typically a fractional difference of
|
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437 1e-15 or so in double precision).
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438
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439 \question 31aug:nondeterministic FFTW gives different results between runs
|
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440
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441 If you use \courier{FFTW_MEASURE\} or \courier{FFTW_PATIENT\} mode,
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442 then the algorithm FFTW employs is not deterministic: it depends on
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443 runtime performance measurements. This will cause the results to vary
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444 slightly from run to run. However, the differences should be slight,
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445 on the order of the floating-point precision, and therefore should
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446 have no practical impact on most applications.
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447
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448 If you use saved plans (wisdom) or \courier{FFTW_ESTIMATE\} mode,
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449 however, then the algorithm is deterministic and the results should be
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450 identical between runs.
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451
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452 \question 26aug:savePlans Can I save FFTW's plans?
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453
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454 Yes. Starting with version 1.2, FFTW provides the \courier{wisdom\}
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455 mechanism for saving plans; see the FFTW manual.
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456
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457 \question 14sep:whyscaled Why does your inverse transform return a scaled result?
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458
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459 Computing the forward transform followed by the backward transform (or
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460 vice versa) yields the original array scaled by the size of the array.
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461 (For multi-dimensional transforms, the size of the array is the
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462 product of the dimensions.) We could, instead, have chosen a
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463 normalization that would have returned the unscaled array. Or, to
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464 accomodate the many conventions in this matter, the transform routines
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465 could have accepted a "scale factor" parameter. We did not do this,
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466 however, for two reasons. First, we didn't want to sacrifice
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467 performance in the common case where the scale factor is 1. Second, in
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468 real applications the FFT is followed or preceded by some computation
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469 on the data, into which the scale factor can typically be absorbed at
|
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470 little or no cost.
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471
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472 \question 02dec:centerorigin How can I make FFTW put the origin (zero frequency) at the center of its output?
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473
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474 For human viewing of a spectrum, it is often convenient to put the
|
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475 origin in frequency space at the center of the output array, rather
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476 than in the zero-th element (the default in FFTW). If all of the
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477 dimensions of your array are even, you can accomplish this by simply
|
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478 multiplying each element of the input array by (-1)^(i + j + ...),
|
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479 where i, j, etcetera are the indices of the element. (This trick is a
|
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480 general property of the DFT, and is not specific to FFTW.)
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481
|
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482 \question 08may:imageaudio How do I FFT an image/audio file in \italic{foobar\} format?
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483
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484 FFTW performs an FFT on an array of floating-point values. You can
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485 certainly use it to compute the transform of an image or audio stream,
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486 but you are responsible for figuring out your data format and
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487 converting it to the form FFTW requires.
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488
|
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489 \question 09apr:linkfails My program does not link (on Unix).
|
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490
|
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491 The libraries must be listed in the correct order (\courier{-lfftw3
|
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492 -lm\} for FFTW 3.x) and \italic{after\} your program sources/objects.
|
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493 (The general rule is that if \italic{A\} uses \italic{B\}, then
|
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494 \italic{A\} must be listed before \italic{B\} in the link command.).
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495
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496 \question 15mar:linkheader I included your header, but linking still fails.
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497
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498 You're a C++ programmer, aren't you? You have to compile the FFTW
|
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499 library and link it into your program, not just \courier{#include
|
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500 <fftw3.h>\}. (Yes, this is really a FAQ.)
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501
|
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502 \question 22oct:nostack My program crashes, complaining about stack space.
|
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503
|
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504 You cannot declare large arrays with automatic storage (e.g. via
|
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505 \courier{fftw_complex array[N]\}); you should use
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506 \courier{fftw_malloc\} (or equivalent) to allocate the arrays you want
|
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507 to transform if they are larger than a few hundred elements.
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508
|
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509 \question 13may:leaks FFTW seems to have a memory leak.
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510
|
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511 After you create a plan, FFTW caches the information required to
|
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512 quickly recreate the plan. (See \qref savePlans) It also maintains a
|
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513 small amount of other persistent memory. You can deallocate all of
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514 FFTW's internally allocated memory, if you wish, by calling
|
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515 \courier{fftw_cleanup()\}, as documented in the manual.
|
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516
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517 \question 16may:allzero The output of FFTW's transform is all zeros.
|
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518
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519 You should initialize your input array \italic{after\} creating the
|
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520 plan, unless you use \courier{FFTW_ESTIMATE\}: planning with
|
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521 \courier{FFTW_MEASURE\} or \courier{FFTW_PATIENT\} overwrites the
|
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522 input/output arrays, as described in the manual.
|
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523
|
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524 \question 05sep:vbetalia How do I call FFTW from the Microsoft language du jour?
|
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525
|
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526 Please \italic{do not\} ask us Windows-specific questions. We do not
|
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527 use Windows. We know nothing about Visual Basic, Visual C++, or .NET.
|
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528 Please find the appropriate Usenet discussion group and ask your
|
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|
529 question there. See also \qref runOnWindows.
|
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530
|
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531 \question 15oct:pruned Can I compute only a subset of the DFT outputs?
|
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532
|
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|
533 In general, no, an FFT intrinsically computes all outputs from all
|
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534 inputs. In principle, there is something called a \italic{pruned
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535 FFT\} that can do what you want, but to compute K outputs out of N the
|
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536 complexity is in general O(N log K) instead of O(N log N), thus saving
|
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537 only a small additive factor in the log. (The same argument holds if
|
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538 you instead have only K nonzero inputs.)
|
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539
|
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540 There are some specific cases in which you can get the O(N log K)
|
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541 performance benefits easily, however, by combining a few ordinary
|
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542 FFTs. In particular, the case where you want the first K outputs,
|
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543 where K divides N, can be handled by performing N/K transforms of size
|
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544 K and then summing the outputs multiplied by appropriate phase
|
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|
545 factors. For more details, see \docref{pruned FFTs with FFTW\}.
|
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|
546
|
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547 There are also some algorithms that compute pruned transforms
|
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548 \italic{approximately\}, but they are beyond the scope of this FAQ.
|
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549
|
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550 \question 21jan:transpose Can I use FFTW's routines for in-place and out-of-place matrix transposition?
|
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551
|
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552 You can use the FFTW guru interface to create a rank-0 transform of
|
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553 vector rank 2 where the vector strides are transposed. (A rank-0
|
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554 transform is equivalent to a 1D transform of size 1, which. just
|
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555 copies the input into the output.) Specifying the same location for
|
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556 the input and output makes the transpose in-place.
|
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557
|
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558 For double-valued data stored in row-major format, plan creation looks like
|
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559 this:
|
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560
|
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|
561 \verbatim
|
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|
562 fftw_plan plan_transpose(int rows, int cols, double *in, double *out)
|
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563 {
|
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564 const unsigned flags = FFTW_ESTIMATE; /* other flags are possible */
|
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565 fftw_iodim howmany_dims[2];
|
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|
566
|
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567 howmany_dims[0].n = rows;
|
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568 howmany_dims[0].is = cols;
|
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|
569 howmany_dims[0].os = 1;
|
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|
570
|
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571 howmany_dims[1].n = cols;
|
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572 howmany_dims[1].is = 1;
|
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573 howmany_dims[1].os = rows;
|
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574
|
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575 return fftw_plan_guru_r2r(/*rank=*/ 0, /*dims=*/ NULL,
|
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|
576 /*howmany_rank=*/ 2, howmany_dims,
|
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577 in, out, /*kind=*/ NULL, flags);
|
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578 }
|
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579 \endverbatim
|
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|
580
|
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|
581 (This entry was written by Rhys Ulerich.)
|
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582
|
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|
583 \comment ######################################################################
|
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|
584
|
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|
585 \section Internals of FFTW
|
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|
586
|
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587 \question 26aug:howworks How does FFTW work?
|
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|
588
|
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589 The innovation (if it can be so called) in FFTW consists in having a
|
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590 variety of composable \italic{solvers\}, representing different FFT
|
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591 algorithms and implementation strategies, whose combination into a
|
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592 particular \italic{plan\} for a given size can be determined at
|
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593 runtime according to the characteristics of your machine/compiler.
|
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|
594 This peculiar software architecture allows FFTW to adapt itself to
|
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|
595 almost any machine.
|
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596
|
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|
597 For more details (albeit somewhat outdated), see the paper "FFTW: An
|
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598 Adaptive Software Architecture for the FFT", by M. Frigo and
|
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599 S. G. Johnson, \italic{Proc. ICASSP\} 3, 1381 (1998), also
|
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600 available at \docref{the FFTW web page\}.
|
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|
601
|
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602 \question 26aug:whyfast Why is FFTW so fast?
|
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|
603
|
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|
604 This is a complex question, and there is no simple answer. In fact,
|
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605 the authors do not fully know the answer, either. In addition to many
|
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606 small performance hacks throughout FFTW, there are three general
|
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607 reasons for FFTW's speed.
|
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608
|
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|
609 \call startlist
|
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610 \call item
|
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|
611 FFTW uses a variety of FFT algorithms and implementation styles
|
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|
612 that can be arbitrarily composed to adapt itself to
|
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613 a machine. See \qref howworks.
|
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|
614 \call item
|
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|
615 FFTW uses a code generator to produce highly-optimized
|
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|
616 routines for computing small transforms.
|
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|
617 \call item
|
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|
618 FFTW uses explicit divide-and-conquer to take advantage
|
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|
619 of the memory hierarchy.
|
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|
620 \call endlist
|
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|
621
|
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|
622 For more details (albeit somewhat outdated), see the paper "FFTW: An
|
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|
623 Adaptive Software Architecture for the FFT", by M. Frigo and
|
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|
624 S. G. Johnson, \italic{Proc. ICASSP\} 3, 1381 (1998),
|
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|
625 available along with other references at \docref{the FFTW web page\}.
|
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|
626
|
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|
627 \comment ######################################################################
|
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|
628
|
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|
629 \section Known bugs
|
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|
630
|
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|
631 \question 27aug:rfftwndbug FFTW 1.1 crashes in rfftwnd on Linux.
|
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|
632
|
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633 This bug was fixed in FFTW 1.2. There was a bug in \courier{rfftwnd\}
|
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|
634 causing an incorrect amount of memory to be allocated. The bug showed
|
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|
635 up in Linux with libc-5.3.12 (and nowhere else that we know of).
|
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|
636
|
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|
637 \question 15oct:fftwmpibug The MPI transforms in FFTW 1.2 give incorrect results/leak memory.
|
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|
638
|
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|
639 These bugs were corrected in FFTW 1.2.1. The MPI transforms (really,
|
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|
640 just the transpose routines) in FFTW 1.2 had bugs that could cause
|
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|
641 errors in some situations.
|
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|
642
|
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|
643 \question 05nov:testsingbug The test programs in FFTW 1.2.1 fail when I change FFTW to use single precision.
|
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|
644
|
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|
645 This bug was fixed in FFTW 1.3. (Older versions of FFTW did
|
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|
646 work in single precision, but the test programs didn't--the error
|
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|
647 tolerances in the tests were set for double precision.)
|
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648
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649 \question 24mar:teststoobig The test program in FFTW 1.2.1 fails for n > 46340.
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650
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651 This bug was fixed in FFTW 1.3. FFTW 1.2.1 produced the right answer,
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652 but the test program was wrong. For large n, n*n in the naive
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653 transform that we used for comparison overflows 32 bit integer
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654 precision, breaking the test.
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655
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656 \question 24aug:linuxthreads The threaded code fails on Linux Redhat 5.0
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657
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658 We had problems with glibc-2.0.5. The code should work with
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659 glibc-2.0.7.
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660
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661 \question 26sep:bigrfftwnd FFTW 2.0's rfftwnd fails for rank > 1 transforms with a final dimension >= 65536.
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662
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663 This bug was fixed in FFTW 2.0.1. (There was a 32-bit integer overflow due
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664 to a poorly-parenthesized expression.)
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665
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666 \question 26mar:primebug FFTW 2.0's complex transforms give the wrong results with prime factors 17 to 97.
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667
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668 There was a bug in the complex transforms that could cause incorrect
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669 results under (hopefully rare) circumstances for lengths with
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670 intermediate-size prime factors (17-97). This bug was fixed in FFTW
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671 2.1.1.
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672
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673 \question 05apr:mpichbug FFTW 2.1.1's MPI test programs crash with MPICH.
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674
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675 This bug was fixed in FFTW 2.1.2. The 2.1/2.1.1 MPI test programs crashed
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676 when using the MPICH implementation of MPI with the \courier{ch_p4\}
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677 device (TCP/IP); the transforms themselves worked fine.
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678
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679 \question 25may:aixthreadbug FFTW 2.1.2's multi-threaded transforms don't work on AIX.
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680
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681 This bug was fixed in FFTW 2.1.3. The multi-threaded transforms in
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682 previous versions didn't work with AIX's \courier{pthreads\}
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683 implementation, which idiosyncratically creates threads in detached
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684 (non-joinable) mode by default.
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685
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686 \question 27sep:bigprimebug FFTW 2.1.2's complex transforms give incorrect results for large prime sizes.
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687
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688 This bug was fixed in FFTW 2.1.3. FFTW's complex-transform algorithm
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689 for prime sizes (in versions 2.0 to 2.1.2) had an integer overflow
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690 problem that caused incorrect results for many primes greater than
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691 32768 (on 32-bit machines). (Sizes without large prime factors are
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692 not affected.)
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693
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694 \question 25may:solaristhreadbug FFTW 2.1.3's multi-threaded transforms don't give any speedup on Solaris.
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695
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696 This bug was fixed in FFTW 2.1.4. (By default, Solaris creates
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697 threads that do not parallelize over multiple processors, so one has
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698 to request the proper behavior specifically.)
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699
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700 \question 03may:aixflags FFTW 2.1.3 crashes on AIX.
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701
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702 The FFTW 2.1.3 \courier{configure\} script picked incorrect compiler
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703 flags for the \courier{xlc\} compiler on newer IBM processors. This
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704 is fixed in FFTW 2.1.4.
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705
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706 \comment Here it ends!
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707
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