Mercurial > hg > soundsoftware-site

changeset 1096:8b57fd618c84 bibplugin_db_migrations

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Merge
author luisf <luis.figueira@eecs.qmul.ac.uk>
date Thu, 29 Nov 2012 14:38:12 +0000
parents 6b67deb0674b (current diff) b9a9efe85907 (diff)
children 981cea967d17
files vendor/plugins/redmine_tags/app/controllers/tags_controller.rb vendor/plugins/redmine_tags/app/views/tags/index.html.erb
diffstat 35 files changed, 541 insertions(+), 301 deletions(-) [+]
line wrap: on
line diff
--- a/app/controllers/projects_controller.rb	Mon Nov 19 18:58:29 2012 +0000
+++ b/app/controllers/projects_controller.rb	Thu Nov 29 14:38:12 2012 +0000
@@ -111,8 +111,7 @@
     end
     # end of code to be removed
 
-
-    if validate_parent_id && @project.save
+    if validate_is_public_key && validate_parent_id && @project.save
       @project.set_allowed_parent!(params[:project]['parent_id']) if params[:project].has_key?('parent_id')
       # Add current user as a project member if he is not admin
       unless User.current.admin?
@@ -300,6 +299,19 @@
     render_404
   end
 
+  def validate_is_public_key
+    # Although is_public isn't mandatory in the project model (it gets
+    # defaulted), it must be present in params -- it can be true or
+    # false, but it must be there. This permits us to make forms in
+    # which the user _has_ to select public or private (rather than
+    # defaulting it) if we want to
+    if params.nil? || params[:project].nil? || !params[:project].has_key?(:is_public)
+      @project.errors.add :is_public, :public_or_private
+      return false
+    end
+    true
+  end
+
   # Validates parent_id param according to user's permissions
   # TODO: move it to Project model in a validation that depends on User.current
   def validate_parent_id
--- a/app/views/activities/_busy.html.erb	Mon Nov 19 18:58:29 2012 +0000
+++ b/app/views/activities/_busy.html.erb	Thu Nov 29 14:38:12 2012 +0000
@@ -1,6 +1,6 @@
 <% events = @events_by_day %>
 <% if (events.nil?) 
-     activity = Redmine::Activity::Fetcher.new(User.current)
+     activity = Redmine::Activity::Fetcher.new(User.anonymous)
      events = activity.events(Date.today - 14, Date.today + 1)
    end
 %>
--- a/app/views/activities/_busy_institution.html.erb	Mon Nov 19 18:58:29 2012 +0000
+++ b/app/views/activities/_busy_institution.html.erb	Thu Nov 29 14:38:12 2012 +0000
@@ -1,7 +1,8 @@
 <% events = @events_by_day %>
 <% if (events.nil?) 
-     activity = Redmine::Activity::Fetcher.new(User.current)
-     events = activity.events(Date.today - 14, Date.today + 1)
+     activity = Redmine::Activity::Fetcher.new(User.anonymous)
+     days = Setting.activity_days_default.to_i
+     events = activity.events(Date.today - days, Date.today + 1)
    end
 %>
 
@@ -24,3 +25,4 @@
     <% end %>
   </ul>
 <% end %>
+
--- a/app/views/projects/_form.html.erb	Mon Nov 19 18:58:29 2012 +0000
+++ b/app/views/projects/_form.html.erb	Thu Nov 29 14:38:12 2012 +0000
@@ -21,9 +21,20 @@
 <br />
   <em> <%= l(:text_project_homepage_info) %></em>
 </p>
-<p><%= f.check_box :is_public %>
+<p>
+<%= label(:project, :is_public_1, l(:field_public_or_private) + content_tag("span", " *", :class => "required")) %>
+<%
+   # if the project hasn't been created fully yet, then we don't
+   # want to set either public or private (make the user decide)
+   initialised = !@project.id.nil?
+%>
+  <%= f.radio_button :is_public, 1, :checked => (initialised && @project.is_public?) %>
+  <%= l(:text_project_public_info) %>
 <br />
-  <em> <%= l(:text_project_visibility_info) %></em>
+  <%= f.radio_button :is_public, 0, :checked => (initialised && !@project.is_public?) %> 
+  <%= l(:text_project_private_info) %>
+<br>
+  <em><%= l(:text_project_visibility_info) %></em>
 </p>
 <%= wikitoolbar_for 'project_description' %>
 
--- a/app/views/projects/_members_box.html.erb	Mon Nov 19 18:58:29 2012 +0000
+++ b/app/views/projects/_members_box.html.erb	Thu Nov 29 14:38:12 2012 +0000
@@ -1,8 +1,8 @@
   <% if @users_by_role.any? %>
-  <div class="members box">
+  <div id="memberbox"><div class="box">
     <h3><%=l(:label_member_plural)%></h3>
     <p><% @users_by_role.keys.sort.each do |role| %>
     <%=h role %>: <%= @users_by_role[role].sort.collect{|u| link_to_user u}.join(", ") %><br />
     <% end %></p>
-  </div>
+  </div></div>
   <% end %>
--- a/app/views/projects/explore.html.erb	Mon Nov 19 18:58:29 2012 +0000
+++ b/app/views/projects/explore.html.erb	Thu Nov 29 14:38:12 2012 +0000
@@ -1,23 +1,32 @@
+<% content_for :header_tags do %>
+    <%= stylesheet_link_tag 'redmine_tags', :plugin => 'redmine_tags' %>
+<% end %>
 
+<% cache(:action => 'explore', :action_suffix => 'tags', :expires_in => 1.hour) do %>
 <h2><%= l(:label_explore_projects) %></h2>
-
   <div class="tags box">
   <h3><%=l(:label_project_tags_all)%></h3>
     <%= render :partial => 'projects/tagcloud' %>
   </div>
+<% end %>
+
 <div class="splitcontentleft">
+  <% cache(:action => 'explore', :action_suffix => 'busy_institutions', :expires_in => 1.hour) do %>
   <div class="institutions box">
   <h3><%=l(:label_institutions_busy)%></h3>
     <%= render :partial => 'activities/busy_institution' %>
   </div>
+  <% end %>
   <div class="projects box">
   <h3><%=l(:label_project_latest)%></h3>
     <%= render :partial => 'projects/latest' %>
   </div>
 </div>
 <div class="splitcontentright">
+  <% cache(:action => 'explore', :action_suffix => 'busy_projects', :expires_in => 1.hour) do %>
   <div class="projects box">
   <h3><%=l(:label_projects_busy)%></h3>
     <%= render :partial => 'activities/busy' %>
   </div>
+  <% end %>
 </div>
--- a/app/views/projects/new.html.erb	Mon Nov 19 18:58:29 2012 +0000
+++ b/app/views/projects/new.html.erb	Thu Nov 29 14:38:12 2012 +0000
@@ -3,6 +3,5 @@
 <% labelled_tabular_form_for @project do |f| %>
 <%= render :partial => 'form', :locals => { :f => f } %>
 <%= submit_tag l(:button_create) %>
-<%= submit_tag l(:button_create_and_continue), :name => 'continue' %>
 <%= javascript_tag "Form.Element.focus('project_name');" %>
 <% end %>
--- a/config/locales/en.yml	Mon Nov 19 18:58:29 2012 +0000
+++ b/config/locales/en.yml	Thu Nov 29 14:38:12 2012 +0000
@@ -130,6 +130,7 @@
         circular_dependency: "This relation would create a circular dependency"
         cant_link_an_issue_with_a_descendant: "An issue cannot be linked to one of its subtasks"
         must_accept_terms_and_conditions: "You must accept the Terms and Conditions"        
+        public_or_private: "You must select either public or private"
 
   actionview_instancetag_blank_option: Please select
 
@@ -328,6 +329,7 @@
   field_root_directory: Root directory
   field_cvsroot: CVSROOT
   field_cvs_module: Module
+  field_public_or_private: "Public or Private?"
 
   setting_external_repository: "Select this if the project's main repository is hosted somewhere else"
   setting_external_repository_url: "The URL of the existing external repository. Must be publicly accessible without a password"
@@ -546,7 +548,7 @@
   label_home: Home
   label_home_heading: Welcome!
   label_my_page: My page
-  label_my_account: My account
+  label_my_account: Account
   label_my_projects: My projects
   label_my_page_block: My page block
   label_administration: Administration
@@ -891,7 +893,7 @@
   button_expand_all: Expand all
   button_delete: Delete
   button_create: Create
-  button_create_and_continue: Create and continue
+  button_create_and_continue: Create and Add Another
   button_test: Test
   button_edit: Edit
   button_edit_associated_wikipage: "Edit associated Wiki page: %{page_title}"
@@ -966,7 +968,9 @@
   text_caracters_minimum: "Must be at least %{count} characters long."
   text_length_between: "Length between %{min} and %{max} characters."
   text_project_name_info: "This will be the name of your project as it appears throughout this site.<br /> You can change it at any time, in the project's settings."
-  text_project_visibility_info: "If your project is not public, it will be visible only to you and to users that you have added as project members.<br/>You can change this later if you wish."
+  text_project_public_info: "Public: visible to anybody browsing the site."
+  text_project_private_info: "Private: visible only to you, and to users you have added as project members."
+  text_project_visibility_info: "You can change whether your project is public or private later if you wish."
   text_user_ssamr_description_info: 'Please describe your current research or development interests.<br/>This information will be used at registration to determine that you are a real person &ndash; so please be descriptive, or your application may be delayed or rejected.<br/>After registration, the description is publicly visible in your profile and you can edit it at any time.'
   text_issue_parent_issue_info: 'If this is a subtask, please insert its parent task number or write the main task name.'
 
--- a/public/stylesheets/application.css	Mon Nov 19 18:58:29 2012 +0000
+++ b/public/stylesheets/application.css	Thu Nov 29 14:38:12 2012 +0000
@@ -256,17 +256,17 @@
 .highlight.token-3 { background-color: #aaf;}
 
 .box{
-padding:6px;
-margin-bottom: 10px;
-background-color:#f6f6f6;
-color:#505050;
-line-height:1.5em;
-border: 1px solid #e4e4e4;
+    padding:6px;
+    margin-bottom: 10px;
+    background-color:#f6f6f6;
+    color:#505050;
+    line-height:1.5em;
+    border: 1px solid #e4e4e4;
 }
 
 .box h4 {
-margin-top: 0;
-padding-top: 0;
+    margin-top: 0;
+    padding-top: 0;
 }
 
 div.square {
@@ -344,6 +344,25 @@
 div#members dt .email { color: #777; font-size: 80%; }
 div#members dd .roles { font-style: italic; }
 
+div#memberbox h3 { 
+  background: url(../images/group.png) no-repeat 0% 50%; 
+  padding-left: 20px;
+}
+div#memberbox p { 
+  padding-left: 20px;
+  margin-left: 0;
+}
+
+div.issues ul {
+  padding-left: 20px;
+  margin-left: 0;
+  list-style-type: none;
+}
+div.issues p {
+  padding-left: 20px;
+  margin-left: 0;
+}
+
 .projects .latest .title { margin-right: 0.5em; }
 .tipoftheday .tip { margin-left: 2em; margin-top: 0.5em; }
 
--- a/public/themes/soundsoftware/stylesheets/application.css	Mon Nov 19 18:58:29 2012 +0000
+++ b/public/themes/soundsoftware/stylesheets/application.css	Thu Nov 29 14:38:12 2012 +0000
@@ -147,7 +147,9 @@
 */
 /* h4 { border-bottom: dotted 1px #c0c0c0; } */
 
-.wiki p { margin-left: 3em; margin-right: 3em; }
+.wiki p, .wiki li { margin-left: 30px; margin-right: 3em; }
+
+.repository-info .wiki p { margin-left: 0 }
 
 div.issue { background: #fdfaf0; border: 1px solid #a9b680; border-left: 4px solid #a9b680; }
 
--- a/public/themes/soundsoftware/stylesheets/fonts-generic.css	Mon Nov 19 18:58:29 2012 +0000
+++ b/public/themes/soundsoftware/stylesheets/fonts-generic.css	Thu Nov 29 14:38:12 2012 +0000
@@ -1,4 +1,4 @@
-@import url(fonts.css);
+@import url(fonts.css?2);
 
 h1, #project-ancestors-title, #top-menu a {
   font-family: Insider, 'Gill Sans', Tahoma, sans-serif;
--- a/public/themes/soundsoftware/stylesheets/fonts-mac.css	Mon Nov 19 18:58:29 2012 +0000
+++ b/public/themes/soundsoftware/stylesheets/fonts-mac.css	Thu Nov 29 14:38:12 2012 +0000
@@ -1,4 +1,4 @@
-@import url(fonts.css);
+@import url(fonts.css?2);
 
 h1, #project-ancestors-title, #top-menu a {
   font-family: Insider, "Lucida Grande", sans-serif;
--- a/public/themes/soundsoftware/stylesheets/fonts-ms.css	Mon Nov 19 18:58:29 2012 +0000
+++ b/public/themes/soundsoftware/stylesheets/fonts-ms.css	Thu Nov 29 14:38:12 2012 +0000
@@ -1,4 +1,4 @@
-@import url(fonts.css);
+@import url(fonts.css?2);
 
 /* IE likes us to separate out normal & bold into different fonts
    rather than use the selectors on the same font */
--- a/vendor/plugins/redmine_bibliography/app/controllers/publications_controller.rb	Mon Nov 19 18:58:29 2012 +0000
+++ b/vendor/plugins/redmine_bibliography/app/controllers/publications_controller.rb	Thu Nov 29 14:38:12 2012 +0000
@@ -5,7 +5,7 @@
   unloadable
 
   model_object Publication
-  before_filter :find_model_object, :except => [:new, :create, :index, :get_bibtex_required_fields, :autocomplete_for_project, :add_author, :sort_author_order, :autocomplete_for_author, :get_user_info ]  
+  before_filter :find_model_object, :except => [:new, :create, :index, :get_bibtex_required_fields, :autocomplete_for_project, :add_author, :sort_author_order, :autocomplete_for_author, :get_user_info ]
   before_filter :find_project_by_project_id, :authorize, :only => [ :edit, :new, :update, :create ]
 
   def new
@@ -16,13 +16,11 @@
     @publication.build_bibtex_entry
 
     # and at least one author
-    # @publication.authorships.build.build_author        
+    # @publication.authorships.build.build_author
     @author_options = [["#{User.current.name} (@#{User.current.mail.partition('@')[2]})", "#{User.current.class.to_s}_#{User.current.id.to_s}"]]
-
-
   end
 
-  def create    
+  def create
     @project = Project.find(params[:project_id])
 
     @author_options = []
@@ -30,7 +28,7 @@
     @publication = Publication.new(params[:publication])
     @publication.projects << @project unless @project.nil?
 
-    if @publication.save 
+    if @publication.save
       @publication.notify_authors_publication_added(@project)
 
       flash[:notice] = "Successfully created publication."
@@ -58,19 +56,19 @@
 
     # method for creating "pasted" bibtex entries
     if bibtex_entry
-      parse_bibtex_list bibtex_entry    
+      parse_bibtex_list bibtex_entry
     end
   end
 
   def get_bibtex_required_fields
 
     unless params[:value].empty?
-      fields = BibtexEntryType.fields(params[:value]) 
+      fields = BibtexEntryType.fields(params[:value])
     end
 
     respond_to do |format|
       format.js {
-        render(:update) {|page|       
+        render(:update) {|page|
           if params[:value].empty?
             page << "hideOnLoad();"
           else
@@ -92,28 +90,29 @@
     end
   end
 
-  def edit   
+  def edit
     find_project_by_project_id unless params[:project_id].nil?
 
     @edit_view = true;
     @publication = Publication.find(params[:id])
     @selected_bibtex_entry_type_id = @publication.bibtex_entry.entry_type
 
-    @author_options = []  
+    @author_options = []
 
-    @bibtype_fields = BibtexEntryType.fields(@selected_bibtex_entry_type_id)    
+    @bibtype_fields = BibtexEntryType.fields(@selected_bibtex_entry_type_id)
   end
 
-  def update    
-    @publication = Publication.find(params[:id])        
-
+  def update
+    @publication = Publication.find(params[:id])
     @author_options = []
 
-    logger.error { "INSIDE THE UPDATE ACTION IN THE PUBLICATION CONTROLLER" }
-
     if @publication.update_attributes(params[:publication])
       flash[:notice] = "Successfully updated Publication."
 
+      # expires the previosly cached entries
+      Rails.cache.delete "publication-#{@publication.id}-ieee"
+      Rails.cache.delete "publication-#{@publication.id}-bibtex"
+
       if !params[:project_id].nil?
         redirect_to :action => :show, :id => @publication, :project_id => params[:project_id]
       else
@@ -121,7 +120,7 @@
       end
     else
       render :action => 'edit'
-    end   
+    end
   end
 
 
@@ -143,7 +142,7 @@
     return authors_entry.split(" and ")
   end
 
-  # parses a list of bibtex 
+  # parses a list of bibtex
   def parse_bibtex_list(bibtex_list)
     bibliography = BibTeX.parse bibtex_list
 
@@ -156,11 +155,11 @@
         create_bibtex_entry d
       end
     end
-  end 
+  end
 
-  def create_bibtex_entry(d)        
+  def create_bibtex_entry(d)
     @publication = Publication.new
-    @bentry = BibtexEntry.new        
+    @bentry = BibtexEntry.new
     authors = []
     institution = ""
     email = ""
@@ -178,17 +177,17 @@
       else
         @bentry[field] = d[field]
       end
-    end 
+    end
 
     @publication.bibtex_entry = @bentry
     @publication.save
 
-    # what is this for??? 
+    # what is this for???
     # @created_publications << @publication.id
 
     # need to save all authors
-    #   and establish the author-publication association 
-    #   via the authorships table 
+    #   and establish the author-publication association
+    #   via the authorships table
     authors.each_with_index.map do |authorname, idx|
       author = Author.new(:name => authorname)
       if author.save!
@@ -220,12 +219,12 @@
   def autocomplete_for_project
     @publication = Publication.find(params[:id])
 
-    @projects = Project.active.like(params[:q]).find(:all, :limit => 100) - @publication.projects            
+    @projects = Project.active.like(params[:q]).find(:all, :limit => 100) - @publication.projects
     logger.debug "Query for \"#{params[:q]}\" returned \"#{@projects.size}\" results"
     render :layout => false
   end
 
-  def autocomplete_for_author    
+  def autocomplete_for_author
     @results = []
 
     object_id = params[:object_id]
@@ -239,8 +238,8 @@
 
     @results = users_list
 
-    # TODO: can be optimized…    
-    authorships_list.each do |authorship|      
+    # TODO: can be optimized…
+    authorships_list.each do |authorship|
       flag = true
 
       users_list.each do |user|
@@ -254,7 +253,7 @@
       @results << authorship if flag
     end
 
-    render :layout => false    
+    render :layout => false
   end
 
   def get_user_info
@@ -272,7 +271,7 @@
 
     respond_to do |format|
       format.js {
-        render(:update) {|page| 
+        render(:update) {|page|
           page[name_field].value = item.name
           page[email_field].value = item.mail
           page[institution_field].value = item.institution
@@ -294,16 +293,16 @@
   end
 
   def add_project
-    @projects = Project.find(params[:publication][:project_ids])    
+    @projects = Project.find(params[:publication][:project_ids])
     @publication.projects << @projects
-    @project = Project.find(params[:project_id])    
+    @project = Project.find(params[:project_id])
 
-    # TODO luisf should also respond to HTML??? 
+    # TODO luisf should also respond to HTML???
     respond_to do |format|
       format.html { redirect_to :back }
-      format.js { 
-        render(:update) {|page| 
-          page[:add_project_form].reset          
+      format.js {
+        render(:update) {|page|
+          page[:add_project_form].reset
           page.replace_html :list_projects, :partial => 'list_projects'
         }
       }
@@ -320,14 +319,14 @@
         @publication.projects.delete proj if request.post?
       end
     else
-      logger.error { "Cannot remove project from publication list" }      
+      logger.error { "Cannot remove project from publication list" }
     end
 
     logger.error { "CURRENT project name#{proj.name} and wanna delete #{@project.name}" }
 
-    render(:update) {|page| 
+    render(:update) {|page|
       page.replace_html "list_projects", :partial => 'list_projects', :id  => @publication
-    }    
+    }
   end
 
   def destroy
--- a/vendor/plugins/redmine_bibliography/app/helpers/publications_helper.rb	Mon Nov 19 18:58:29 2012 +0000
+++ b/vendor/plugins/redmine_bibliography/app/helpers/publications_helper.rb	Thu Nov 29 14:38:12 2012 +0000
@@ -12,20 +12,20 @@
   def projects_check_box_tags(name, projects)
     s = ''
     projects.sort.each do |project|
-      if User.current.allowed_to?(:edit_publication, project) 
+      if User.current.allowed_to?(:edit_publication, project)
         s << "<label>#{ check_box_tag name, project.id, false } #{link_to_project project}</label>\n"
         s << '<br />'
       end
     end
 
-    s 
+    s
   end
-  
+
   def choose_author_link(object_name, items)
     # called by autocomplete_for_author (publications' action/view)
     # creates the select list based on the results array
     # results is an array with both Users and Authorships objects
-        
+
     @author_options = []
     @results.each do |result|
       email_bit = result.mail.partition('@')[2]
@@ -34,26 +34,26 @@
       end
       @author_options << ["#{result.name} #{email_bit}", "#{result.class.to_s}_#{result.id.to_s}"]
     end
-    
+
    if @results.size > 0
      s = select_tag( form_tag_name(object_name, :author_search_results), options_for_select(@author_options), { :id => form_tag_id(object_name, :author_search_results), :size => 3} )
      s << observe_field( form_tag_id(object_name, :author_search_results), :on => 'click', :function => "alert('Element changed')", :with => 'q')
    else
      s = "<em>No Authors found that match your search… sorry!</em>"
-   end      
+   end
   end
 
   def link_to_remove_fields(name, f)
     f.hidden_field(:_destroy) + link_to_function(name, "remove_fields(this)", :class => 'icon icon-del')
   end
-    
+
   def link_to_add_author_fields(name, f, association, action)
     new_object = f.object.class.reflect_on_association(association).klass.new
     fields = f.fields_for(association, new_object, :child_index => "new_#{association}") do |builder|
       render(association.to_s.singularize + "_fields", :f => builder)
-    end    
+    end
     link_to_function(name, h("add_author_fields(this, '#{association}', '#{escape_javascript(fields)}', '#{action}')"), { :class => 'icon icon-add', :id => "add_another_author" })
-  end  
+  end
 
   def sanitized_object_name(object_name)
     object_name.gsub(/\]\[|[^-a-zA-Z0-9:.]/,"_").sub(/_$/,"")
@@ -62,75 +62,77 @@
   def sanitized_method_name(method_name)
     method_name.sub(/\?$/, "")
   end
-  
+
   def form_tag_name(object_name, method_name)
       str = "#{object_name.to_s}[#{sanitized_method_name(method_name.to_s)}]"
-      str.to_sym 
+      str.to_sym
   end
-  
-  def form_tag_id(object_name, method_name)    
+
+  def form_tag_id(object_name, method_name)
     str = "#{sanitized_object_name(object_name.to_s)}_#{sanitized_method_name(method_name.to_s)}"
     str.to_sym
   end
-  
+
   def form_object_id(object_name)
     str = object_name.split("\[").last().gsub("\]","")
     str.to_sym
   end
 
-  def render_authorships_list(publication)   
+  def render_authorships_list(publication)
     s = '<p>'
-    
+
     publication.authorships.each do |authorship|
       s << link_to_authorship(authorship)
       s << "<br /><em>#{authorship.institution}</em></p>"
-    end    
+    end
 
-    s   
+    s
   end
-  
-  def render_projects_list(publication, show_delete_icon)    
+
+  def render_projects_list(publication, show_delete_icon)
     s= ""
-    
+
     publication.projects.visible.each do |proj|
       s << link_to_project(proj, {}, :class => 'publication_project')
-    
-      if show_delete_icon  
+
+      if show_delete_icon
         if User.current.allowed_to?(:edit_publication, @project)
           if @project == proj
             # todo: move this message to yml file
             confirm_msg = 'Are you sure you want to remove the current project from this publication\'s projects list?'
           else
             confirm_msg = false
-          end 
-          
-          s << link_to_remote(l(:button_delete), { :url => { :controller => 'publications', :action => 'remove_project', :id => publication, :remove_project_id => proj,  :project_id => @project }, :method => :post, :confirm => confirm_msg }, :class => 'icon icon-del') 
+          end
+
+          s << link_to_remote(l(:button_delete), { :url => { :controller => 'publications', :action => 'remove_project', :id => publication, :remove_project_id => proj,  :project_id => @project }, :method => :post, :confirm => confirm_msg }, :class => 'icon icon-del')
         end
       end
-      
-      s << "<br />"      
-    end    
 
-    s  
+      s << "<br />"
+    end
+
+    s
   end
-  
-  def show_cite_proc_entry(publication)
-    # code that should be moved either to the model or to the controller?
-    
-    publication.print_entry(:ieee)
+
+  def print_ieee_format(publication)
+    Rails.cache.fetch("publication-#{publication.id}-ieee") do
+      publication.print_entry(:ieee)
+    end
   end
-  
-  def print_bibtex_entry(publication)
-    publication.print_entry(:bibtex)
+
+  def print_bibtex_format(publication)
+    Rails.cache.fetch("publication-#{publication.id}-bibtex") do
+      publication.print_entry(:bibtex)
+    end
   end
-    
-  
+
+
   def show_bibtex_fields(bibtex_entry)
     s = ""
     bibtex_entry.attributes.keys.sort.each do |key|
       value = bibtex_entry.attributes[key].to_s
       next if key == 'id' or key == 'publication_id' or value == ""
-      s << "<h4>" + l("field_#{key}") + "</h4>" 
+      s << "<h4>" + l("field_#{key}") + "</h4>"
       s << "<p>"
       if key == "entry_type"
         s << bibtex_entry.entry_type_label
@@ -140,6 +142,6 @@
       s << "</p>"
     end
     s
-  end 
+  end
 end
 
--- a/vendor/plugins/redmine_bibliography/app/models/publication.rb	Mon Nov 19 18:58:29 2012 +0000
+++ b/vendor/plugins/redmine_bibliography/app/models/publication.rb	Thu Nov 29 14:38:12 2012 +0000
@@ -2,10 +2,10 @@
 
 class Publication < ActiveRecord::Base
   unloadable
-  
+
   has_many :authorships, :dependent => :destroy, :order => "auth_order ASC"
   has_many :authors, :through => :authorships, :uniq => true
-  
+
   has_one :bibtex_entry, :dependent => :destroy
 
   validates_presence_of :title
@@ -14,11 +14,30 @@
   accepts_nested_attributes_for :authorships
   accepts_nested_attributes_for :authors, :allow_destroy => true
   accepts_nested_attributes_for :bibtex_entry, :allow_destroy => true
-  
+
   has_and_belongs_to_many :projects, :uniq => true
-  
+
   before_save :set_initial_author_order
 
+  named_scope :visible, lambda {|*args| { :include => :projects,
+                                          :conditions => Project.allowed_to_condition(args.shift || User.current, :view_publication, *args) } }
+
+  acts_as_activity_provider :type => 'publication',
+                            :timestamp => "#{Publication.table_name}.created_at",
+                            :find_options => {
+                              :include => :projects,
+                              :conditions => "#{Project.table_name}.id = projects_publications.project_id"
+                            }
+
+  acts_as_event :title => Proc.new {|o| o.title },
+                :datetime => :created_at,
+                :type => 'publications',
+                :author => nil,
+                #todo - need too move the cache from the helper to the model
+                :description => Proc.new {|o| o.print_entry(:ieee)},
+                :url => Proc.new {|o| {:controller => 'publications', :action => 'show', :id => o.id }}
+
+
   # Ensure error message uses proper text instead of
   # bibtex_entry.entry_type (#268).  There has to be a better way to
   # do this!
@@ -30,62 +49,62 @@
     end
   end
 
-  def notify_authors_publication_added(project)  
+  def notify_authors_publication_added(project)
     self.authors.each do |author|
       Rails.logger.debug { "Sending mail to \"#{self.title}\" publication authors." }
       Mailer.deliver_publication_added(author.user, self, project) unless author.user.nil?
     end
   end
-  
-  def notify_authors_publication_updated(project)  
+
+  def notify_authors_publication_updated(project)
     self.authors.each do |author|
       Rails.logger.debug { "Sending mail to \"#{self.title}\" publication authors." }
       Mailer.deliver_publication_updated(author.user, self, project) unless author.user.nil?
     end
   end
-  
-  
+
+
   def set_initial_author_order
     authorships = self.authorships
-    
+
     logger.debug { "Publication \"#{self.title}\" has #{authorships.size} authors." }
-    
+
     authorships.each_with_index do |authorship, index|
       if authorship.auth_order.nil?
          authorship.auth_order = index
       end
-    end    
+    end
   end
-  
+
   def print_bibtex_author_names
-    # this authors are correctly sorted because the authorships model 
+    # this authors are correctly sorted because the authorships model
     # already outputs the author names ASC by auth_order
     self.authorships.map{|a| a.name_on_paper}.join(' and ')
-  end  
-  
+  end
+
   def print_entry(style)
     bib = BibTeX::Entry.new
 
     bib.author = self.print_bibtex_author_names
     bib.title = self.title
 
-    self.bibtex_entry.attributes.keys.sort.each do |key|      
+    self.bibtex_entry.attributes.keys.sort.each do |key|
       value = self.bibtex_entry.attributes[key].to_s
       next if key == 'id' or key == 'publication_id' or value == ""
 
-      if key == "entry_type"        
+      if key == "entry_type"
         bib.type = BibtexEntryType.find(self.bibtex_entry.entry_type).name
       else
         bib[key.to_sym] = value
-      end               
+      end
     end
-    
+
     if style == :ieee
-      CiteProc.process bib.to_citeproc, :style => :ieee, :format => :html      
-    else 
+      CiteProc.process bib.to_citeproc, :style => :ieee, :format => :html
+    else
       bibtex = bib.to_s :include => :meta_content
       bibtex.strip!
       logger.error { bibtex }
-    end  
+    end
   end
 end
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/vendor/plugins/redmine_bibliography/app/views/activities/_recent.html.erb	Thu Nov 29 14:38:12 2012 +0000
@@ -0,0 +1,92 @@
+<% events = @events_by_day %>
+<% max = 5 %>
+<% if (events.nil?)
+     activity = Redmine::Activity::Fetcher.new(User.current, :project => @project)
+
+     if @project
+        # Don't show news (duplicated with News box) or wiki edits (too
+	# tedious) in project front page
+        activity.scope = [ "changesets", "files", "issues", "documents" ]
+     end
+
+     events = activity.events(Date.today - 28, Date.today + 1)
+
+     if defined? user
+        events = events.select { |e|
+
+          if e.class != Publication
+            user.member_of? e.project
+          else
+            e.projects.map {|p| user.member_of? p }
+          end
+        }
+
+     end
+
+     events = events.first(max)
+
+   end
+%>
+
+<div id="activity">
+
+<% if @project.nil? %>
+   <%= content_tag('h3', l(:label_activity_my_recent)) %>
+   <div class="activity box">
+<% end %>
+
+<% if events.empty? %>
+
+   <% if @project.nil? %>
+     <p><%= l(:label_activity_my_recent_none) %></p>
+   <% end %>
+
+<% else %>
+
+   <% if !@project.nil? %>
+     <div class="activity box">
+     <%= content_tag('h3', l(:label_activity_recent)) %>
+   <% end %>
+
+   <dl>
+   <% events.sort {|x,y| y.event_datetime <=> x.event_datetime }.each do |e| -%>
+    <%- if e.class != Publication -%>
+      <dt class="<%= User.current.logged? && e.respond_to?(:event_author) && User.current == e.event_author ? 'me' : nil %>">
+     	<%= avatar(e.event_author, :size => "24") if e.respond_to?(:event_author) %>
+        <span class="time"><%= format_time(e.event_datetime) %></span>
+        <%= content_tag('span', link_to_project(e.project), :class => 'project') if @project.nil? || @project != e.project %>
+        <% if e.respond_to?(:event_author) %>
+          <span class="author"><%= e.event_author %></span>
+        <% end %>
+      </dt>
+      <dd><%= link_to format_activity_title(e.event_title), e.event_url %>
+        <span class="description"><%= format_activity_description(e.event_description) %></span>
+      </dd>
+     <% else -%>
+      <dt class="<%= User.current.logged? && e.respond_to?(:event_author) && User.current == e.event_author ? 'me' : nil %>">
+         <span class="time"><%= format_time(e.event_datetime) %></span>
+          <%= link_to format_activity_title(e.event_title), e.event_url %>
+      was added to the following
+      <% if e.projects.count > 1 %>
+        projects:
+      <%- else -%>
+        project:
+      <%- end -%>
+      <%= content_tag('span', e.projects.join(', ')) -%>         <% if e.respond_to?(:event_author) %>
+             <span class="author"><%= e.event_author %></span>
+         <% end %>
+        </dt>
+           <dd><%= link_to format_activity_title(e.event_title), e.event_url %>
+           <span class="description"><%= format_activity_description(e.event_description) %></span>
+           </dd>
+     <% end -%>
+   <% end -%>
+   </dl>
+
+   </div>
+
+<% end %>
+
+<% if events.empty? and @project.nil? %></div><% end %>
+
+</div>
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/vendor/plugins/redmine_bibliography/app/views/activities/index.html.erb	Thu Nov 29 14:38:12 2012 +0000
@@ -0,0 +1,91 @@
+<h2><%=
+  if @author.nil?
+    if @institution_name.blank?
+      l(:label_activity)
+    else
+      l(:label_institution_activity, h(@institution_name))
+    end
+  else
+    l(:label_user_activity, link_to_user(@author))
+  end
+  %></h2>
+<p class="subtitle"><%= l(:label_date_from_to, :start => format_date(@date_to - @days), :end => format_date(@date_to-1)) %></p>
+
+<div id="activity">
+<% @events_by_day.keys.sort.reverse.each do |day| %>
+<h3><%= format_activity_day(day) %></h3>
+<dl>
+<% @events_by_day[day].sort {|x,y| y.event_datetime <=> x.event_datetime }.each do |e| -%>
+  <%- if e.class != Publication -%>
+    <dt class="<%= e.event_type %>  <%= User.current.logged? && e.respond_to?(:event_author) && User.current == e.event_author ? 'me' : nil %>">
+      <%= avatar(e.event_author, :size => "24") if e.respond_to?(:event_author) %>
+      <span class="time"><%= format_time(e.event_datetime, false) %></span>
+      <%= content_tag('span', h(e.project), :class => 'project') if @project.nil? || @project != e.project %>
+      <%= link_to format_activity_title(e.event_title), e.event_url %>
+    </dt>
+    <dd>
+      <span class="description"><%= format_activity_description(e.event_description) %></span>
+      <span class="author"><%= link_to_user(e.event_author) if e.respond_to?(:event_author) %></span>
+    </dd>
+  <%- else -%>
+    <dt class="<%= e.event_type %>  <%= User.current.logged? && e.respond_to?(:event_author) && User.current == e.event_author ? 'me' : nil %>">
+      <%= avatar(e.event_author, :size => "24") if e.respond_to?(:event_author) %>
+      <span class="time"><%= format_time(e.event_datetime, false) %></span>
+      <%= link_to format_activity_title(e.event_title), e.event_url %>
+      was added to the following
+      <% if e.projects.count > 1 %>
+        projects:
+      <%- else -%>
+        project:
+      <%- end -%>
+      <%= content_tag('span', e.projects.join(', ')) -%>
+    </dt>
+    <dd>
+      <span class="description"><%= e.event_description -%></span>
+      <span class="author"><%= link_to_user(e.event_author) if e.respond_to?(:event_author) %></span>
+    </dd>
+  <% end -%>
+<%- end -%>
+</dl>
+<% end -%>
+</div>
+
+<%= content_tag('p', l(:label_no_data), :class => 'nodata') if @events_by_day.empty? %>
+
+<div style="float:left;">
+<%= link_to_content_update("\xc2\xab " + l(:label_previous),
+                   params.merge(:from => @date_to - @days - 1),
+                   :title => l(:label_date_from_to, :start => format_date(@date_to - 2*@days), :end => format_date(@date_to - @days - 1))) %>
+</div>
+<div style="float:right;">
+<%= link_to_content_update(l(:label_next) + " \xc2\xbb",
+                   params.merge(:from => @date_to + @days - 1),
+                   :title => l(:label_date_from_to, :start => format_date(@date_to), :end => format_date(@date_to + @days - 1))) unless @date_to >= Date.today %>
+</div>
+&nbsp;
+<% other_formats_links do |f| %>
+  <%= f.link_to 'Atom', :url => params.merge(:from => nil, :key => User.current.rss_key) %>
+<% end %>
+
+<% content_for :header_tags do %>
+<%= auto_discovery_link_tag(:atom, params.merge(:format => 'atom', :from => nil, :key => User.current.rss_key)) %>
+<% end %>
+
+<% content_for :sidebar do %>
+<% form_tag({}, :method => :get) do %>
+<h3><%= l(:label_activity) %></h3>
+<p><% @activity.event_types.each do |t| %>
+<%= check_box_tag "show_#{t}", 1, @activity.scope.include?(t) %>
+<label for="show_<%=t%>"><%= link_to(l("label_#{t.singularize}_plural"), {"show_#{t}" => 1, :user_id => params[:user_id]})%></label>
+<br />
+<% end %></p>
+<% if @project && @project.descendants.active.any? %>
+    <%= hidden_field_tag 'with_subprojects', 0 %>
+    <p><label><%= check_box_tag 'with_subprojects', 1, @with_subprojects %> <%=l(:label_subproject_plural)%></label></p>
+<% end %>
+<%= hidden_field_tag('user_id', params[:user_id]) unless params[:user_id].blank? %>
+<p><%= submit_tag l(:button_apply), :class => 'button-small', :name => nil %></p>
+<% end %>
+<% end %>
+
+<% html_title(l(:label_activity), @author) -%>
--- a/vendor/plugins/redmine_bibliography/app/views/projects/_bibliography_box.html.erb	Mon Nov 19 18:58:29 2012 +0000
+++ b/vendor/plugins/redmine_bibliography/app/views/projects/_bibliography_box.html.erb	Thu Nov 29 14:38:12 2012 +0000
@@ -9,18 +9,18 @@
     <div class="box">
     <h3><%=l(:label_related_publication_plural)%></h3>
 
-     <dl>       
-     <% @project.publications.each do |publication| %>       
+     <dl>
+     <% @project.publications.each do |publication| %>
        <dt>
-          <%= publication.print_entry(:ieee) -%>
+          <%= print_ieee_format(publication) %>
        </dt>
        <dd>
-         <%= link_to("[More Details]", {:controller => :publications, :action => :show, :id => publication.id, :project_id => @project.id}) -%> 
-         
-         <%= link_to_function "[Bibtex]", onclick="toggleBibtex(this)" -%> 
+         <%= link_to("[More Details]", {:controller => :publications, :action => :show, :id => publication.id, :project_id => @project.id}) -%>
+
+         <%= link_to_function "[B<small>IB</small>T<sub>E</sub>X]", onclick="toggleBibtex(this)" -%>
        </dd>
        <dd class="bibtex-textarea collapsed" style="display: none;">
-         <textarea readonly><%= publication.print_entry(:bibtex) -%></textarea>         
+         <textarea readonly> <%= print_bibtex_format(publication) %> </textarea>
        </dd>
    <% end -%>
      </dl>
--- a/vendor/plugins/redmine_bibliography/app/views/publications/_form.html.erb	Mon Nov 19 18:58:29 2012 +0000
+++ b/vendor/plugins/redmine_bibliography/app/views/publications/_form.html.erb	Thu Nov 29 14:38:12 2012 +0000
@@ -1,8 +1,8 @@
-<%= f.error_messages %>  
+<%= f.error_messages %>
 
 <h3><%= f.text_field :title, :required => true, :size => 70 %></h3>
 
-<div class="splitcontentleft">      
+<div class="splitcontentleft">
   <h3><%= l(:label_publication_other_details) %></h3>
   <div class="box tabular">
     <% f.fields_for :bibtex_entry do |builder| -%>
@@ -14,12 +14,17 @@
       <br />
       <em><%= l(:text_external_url) %></em>
     </p>
+    <p>
+      <%= f.text_field :doi, :size => 70 %>
+      <br />
+      <em><%= l(:text_doi) %></em>
+    </p>
 
   </div>
 </div>
 
 <div class="splitcontentright">
-  <h3><%= l(:authors) %></h3>    
+  <h3><%= l(:authors) %></h3>
   <div class="box tabular">
     <% f.fields_for :authorships do |builder| -%>
       <%= render "authorship_fields", :f => builder %>
--- a/vendor/plugins/redmine_bibliography/app/views/publications/show.html.erb	Mon Nov 19 18:58:29 2012 +0000
+++ b/vendor/plugins/redmine_bibliography/app/views/publications/show.html.erb	Thu Nov 29 14:38:12 2012 +0000
@@ -2,10 +2,10 @@
 
 <div class="box">
   <h3>Publication Info</h3>
-  <%= show_cite_proc_entry(@publication)%>
-  
-  <h3>Bibtex Format</h3>
-    <%=h print_bibtex_entry(@publication) %>
+  <p><%= print_ieee_format(@publication)%></p>
+
+  <h3>B<small>IB</small>T<sub>E</sub>X Format</h3>
+  <pre><%=h print_bibtex_format(@publication) %></pre>
 </div>
 
 <div class="box">
@@ -14,7 +14,7 @@
 <ul id="authorships">
   <% for authorship in @publication.authorships.find(:all, :order => :auth_order) %>
     <% content_tag_for :li, authorship do %>
-      <%- if User.current.allowed_to?(:edit_publication, @project) && @publication.authorships.length > 1 -%>    
+      <%- if User.current.allowed_to?(:edit_publication, @project) && @publication.authorships.length > 1 -%>
         <span class="handle">[drag to reorder]</span>
       <%- end -%>
       <%= link_to_authorship authorship %> <em><%= h authorship.institution %></em> <br />
@@ -30,17 +30,21 @@
   <%= show_bibtex_fields(@publication.bibtex_entry) %>
 <%- end -%>
 
-<% unless @publication.external_url.blank? %>
-  <h4>
-    <%= l(:field_external_url) %>
-  </h4>
+<%- unless @publication.external_url.blank? -%>
   <p>
-    <%= link_to h(@publication.external_url), @publication.external_url, {:target => "_blank"} %>
+    <b><%= l(:field_external_url) %>:</b> <%= link_to h(@publication.external_url), @publication.external_url, {:target => "_blank"} -%>
+  </p>
+<%- end -%>
+
+
+<% unless @publication.doi.blank? %>
+  <p>
+    <b><%= l(:field_doi)-%>:</b> <%= link_to h(@publication.doi), "http://dx.doi.org/#{@publication.doi}", {:target => "_blank"} -%>
   </p>
 <% end %>
 
 <br / >
-  <% if User.current.allowed_to?(:add_publication, @project) %>	
+  <% if User.current.allowed_to?(:add_publication, @project) %>
     <%= link_to l(:label_publication_edit), { :controller => "publications", :action => "edit", :id => @publication, :project_id => @project } %> |
     <%= link_to "Delete", {:controller => 'publications', :action => 'destroy', :id => @publication, :project_id => @project },
                                                      :confirm => l(:text_are_you_sure), :method => :delete, :title => l(:button_delete) %> |
@@ -49,15 +53,15 @@
 </div>
 
 <% projects = Project.active.find(:all, :limit => 100, :order => 'name ASC') - @publication.projects %>
-  
+
 <% content_for :sidebar do %>
   <h3><%=l(:label_publication_project_index)%></h3>
 
   <p id="list_projects">
     <%= render :partial => 'list_projects' %>
   </p>
-  
+
   <%- if User.current.allowed_to?(:edit_publication, @project) -%>
-    <%= render :partial => 'add_project_form' %>    
+    <%= render :partial => 'add_project_form' %>
   <%- end -%>
 <% end %>
--- a/vendor/plugins/redmine_bibliography/assets/stylesheets/bibliography.css	Mon Nov 19 18:58:29 2012 +0000
+++ b/vendor/plugins/redmine_bibliography/assets/stylesheets/bibliography.css	Thu Nov 29 14:38:12 2012 +0000
@@ -33,18 +33,20 @@
 }
 
 
-div#bibliography dd { margin-bottom: 1em; padding-left: 18px; font-size: 0.9em; }
+div#bibliography dd { margin-bottom: 1em; font-size: 0.9em; }
 
 div#bibliography dd .authors { font-style: italic; }
 div#bibliography dd span.authors { color: #808080; }
 div#bibliography dd span.year { padding-left: 0.6em; }
 
 div#bibliography .box dt { 
-  background: url(../../../images/document.png) no-repeat 0% 50%; padding-left: 20px;
-  margin-left: 2em;
+  background: url(../../../images/document.png) no-repeat 0% 4px;
+  padding-left: 20px;
+  margin-left: 0;
 }
 div#bibliography .box dd { 
-  margin-left: 25px;
+  padding-left: 20px;
+  margin-left: 0;
 }
 
 div#bibliography h3 { 
@@ -58,4 +60,4 @@
   font: normal 8px;
   padding: 2px 10px;
   border: solid 1px #ddd;  
-}
\ No newline at end of file
+}
--- a/vendor/plugins/redmine_bibliography/config/locales/en.yml	Mon Nov 19 18:58:29 2012 +0000
+++ b/vendor/plugins/redmine_bibliography/config/locales/en.yml	Thu Nov 29 14:38:12 2012 +0000
@@ -12,8 +12,7 @@
   label_my_publications_box: "My Publications"
   view_all_publications: "View All Project's Publications"
   publications: Publications
-  
-  
+
   identify_author_question: Is the right person selected above?
   identify_author_yes: "Yes"
   identify_author_correct: "Yes, but I need to correct some details below"
@@ -25,24 +24,25 @@
   label_all_publications_for_project: Publications associated with %{project}
   label_authors_show: "Authorships associated with this author"
   label_authors_index: "List of authors"
-  
+
   field_authorship_publication_title: "Publication"
   field_authorship_name: "Name on Paper"
   field_authorship_email: "Email"
   field_authorship_institution: "Institution"
-  
+
   field_external_url: "External URL"
+  field_doi: "DOI"
   field_publication_title: Title
   field_publication_authors: Authors
   field_publication_projects: "Associated projects"
   field_author_name: Author
   field_author_user: User Name
   field_author_username: "Associated user"
-  field_author_publications: "Publications by this Author" 
+  field_author_publications: "Publications by this Author"
   field_identify_author_yes: "Yes"
   field_identify_author_correct: "Corrections"
   field_identify_author_no: "No"
-  
+
   label_author_is_me: "(I am this author)"
   label_add_me_as_author: "Add me as an author"
   label_add_an_author: "Add an author"
@@ -54,7 +54,7 @@
   label_author_information: "Author Information"
 
   remove_author: "Remove this author"
-  
+
   label_publication_plural: "Publications"
   label_related_publication_plural: "Related publications"
   label_publication_new: "Create New Publication"
@@ -67,22 +67,23 @@
   label_publication_project_index: "Projects associated with this publication"
   label_publication_index: "View all publications"
   label_publication_other_details: "Details"
-  
+
   text_external_url: "Link to the publication or to an external page about it."
+  text_doi: "DOI (Digital Object Identifier)."
   text_author_name_on_paper: "Author's name as it appears on the paper."
   text_author_institution: "Author's institution as on the paper."
   text_author_email: "Author's email address as on the paper."
-  
+
   text_author_search: "Search existing authors"
-  
+
   # authorships model
   field_institution: "Institution"
-  field_name_on_paper: "Name" 
+  field_name_on_paper: "Name"
   field_email: "Email Address"
-      
+
   # bibtex_entries model
   field_entry_type: "Publication Type"
-  field_id: "id" 
+  field_id: "id"
   field_publication_id: "Publication_id"
   field_address: "Address"
   field_annote: "Annote"
@@ -122,7 +123,7 @@
   field_bibtex_proceedings: Conference proceedings
   field_bibtex_techreport: Technical report
   field_bibtex_unpublished: Unpublished
-  
+
   label_author_1: First author
   label_author_2: Second author
   label_author_3: Third author
@@ -146,6 +147,6 @@
 
   mail_subject_publication_added: "You have been added as an author to a new publication"
   mail_body_publication_added: "A new publication (%{publication}) has been added to the project '%{project}.'"
-  
-  
-  
+
+
+
--- a/vendor/plugins/redmine_bibliography/init.rb	Mon Nov 19 18:58:29 2012 +0000
+++ b/vendor/plugins/redmine_bibliography/init.rb	Thu Nov 29 14:38:12 2012 +0000
@@ -4,9 +4,6 @@
 require 'bibtex'
 require 'citeproc'
 
-
-RAILS_DEFAULT_LOGGER.info 'Starting Bibliography Plugin for RedMine'
-
 # Patches to the Redmine core.
 Dispatcher.to_prepare :redmine_model_dependencies do
   require_dependency 'project'
@@ -25,7 +22,9 @@
     Mailer.send(:include, Bibliography::MailerPatch)
   end
 
-
+  unless ProjectsHelper.included_modules.include?(Bibliography::ProjectsHelperPatch)
+    ProjectsHelper.send(:include, Bibliography::ProjectsHelperPatch)
+  end
 end
 
 
@@ -41,15 +40,22 @@
   settings :default => { 'menu' => 'Publications' }, :partial => 'settings/bibliography'
 
   project_module :redmine_bibliography do
+    permission :view_publication, {:publications => :show}, :public => :true
     permission :publications, { :publications => :index }, :public => true
     permission :edit_publication, {:publications => [:edit, :update]}
     permission :add_publication, {:publications => [:new, :create]}
     permission :delete_publication, {:publications => :destroy}
 
+
   end
 
   # extending the Project Menu
   menu :project_menu, :publications, { :controller => 'publications', :action => 'index', :path => nil }, :after => :activity, :param => :project_id, :caption => Proc.new { Setting.plugin_redmine_bibliography['menu'] },
    :if => Proc.new { !Setting.plugin_redmine_bibliography['menu'].blank? }
-    
+
+  activity_provider :publication, :class_name => 'Publication', :default => true
+
 end
+
+
+
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/vendor/plugins/redmine_bibliography/lib/bibliography/projects_helper_patch.rb	Thu Nov 29 14:38:12 2012 +0000
@@ -0,0 +1,17 @@
+module Bibliography
+  module ProjectsHelperPatch
+
+    def self.included(base) # :nodoc:
+      base.send(:include, InstanceMethods)
+      base.send(:include, PublicationsHelper)
+
+      base.class_eval do
+        unloadable
+      end
+    end
+
+    module InstanceMethods
+    end
+  end
+end
+
--- a/vendor/plugins/redmine_bibliography/lib/bibliography/user_author_patch.rb	Mon Nov 19 18:58:29 2012 +0000
+++ b/vendor/plugins/redmine_bibliography/lib/bibliography/user_author_patch.rb	Thu Nov 29 14:38:12 2012 +0000
@@ -1,16 +1,16 @@
 require_dependency 'user'
 
 module Bibliography
-  module UserAuthorPatch    
+  module UserAuthorPatch
     def self.included(base)
-      base.send(:include, InstanceMethods) 
-      extend ClassMethods     
-          
+      base.send(:include, InstanceMethods)
+      extend ClassMethods
+
     end #self.included
-    
+
     module ClassMethods
-    end  
-    
+    end
+
     module InstanceMethods
 
       def institution
@@ -18,28 +18,28 @@
           institution_name = self.ssamr_user_detail.institution_name
         else
           institution_name = "No Institution Set"
-        end        
-        return institution_name        
+        end
+        return institution_name
       end
 
       def get_author_info
         # TODO: DELETE THIS METHOD??
-        info = { 
+        info = {
           :name_on_paper =>  self.name,
           :email => self.mail,
           :institution => "",
           :author_user_id => self.id,
-          :is_user => "1"                    
+          :is_user => "1"
         }
 
         if not self.ssamr_user_detail.nil?
           info[:institution]  = self.ssamr_user_detail.institution_name
         end
 
-        return info        
+        return info
       end
-                
+
     end #InstanceMethods
-    
+
   end #UserPublicationsPatch
 end #RedmineBibliography
--- a/vendor/plugins/redmine_tags/app/controllers/tags_controller.rb	Mon Nov 19 18:58:29 2012 +0000
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,15 +0,0 @@
-class TagsController < ApplicationController
-  
-  def index
-    respond_to do |format|
-      format.html {
-        render :template => 'tags/index.html.erb', :layout => !request.xhr?
-      }
-      format.api  {
-      }
-      format.atom {
-      }
-    end
-  end
-
-end
--- a/vendor/plugins/redmine_tags/app/views/projects/_filter_search_tags.html.erb	Mon Nov 19 18:58:29 2012 +0000
+++ b/vendor/plugins/redmine_tags/app/views/projects/_filter_search_tags.html.erb	Thu Nov 29 14:38:12 2012 +0000
@@ -6,7 +6,7 @@
       </p>
       <div id="project_tag_candidates" class="autocomplete"></div>
       <%= javascript_include_tag 'tags_input', :plugin => 'redmine_tags' -%>
-      <%= javascript_tag "observeProjectTagsField('#{url_for(:controller => 'auto_completes', :action => 'project_search_tags', :project_id => Project.first.id)}', true)" -%>
+      <%= javascript_tag "observeProjectTagsField('#{url_for(:controller => 'auto_completes', :action => 'project_search_tags')}', true)" -%>
     </div>
   <%- end -%>
 </p>
--- a/vendor/plugins/redmine_tags/app/views/projects/_filter_tags.html.erb	Mon Nov 19 18:58:29 2012 +0000
+++ b/vendor/plugins/redmine_tags/app/views/projects/_filter_tags.html.erb	Thu Nov 29 14:38:12 2012 +0000
@@ -7,7 +7,7 @@
       <div id="project_tag_candidates" class="autocomplete"></div>
       <%= javascript_include_tag 'tags_input', :plugin => 'redmine_tags' %>
 
-      <%= javascript_tag "observeProjectTagsField('#{url_for(:controller => 'auto_completes', :action => 'project_tags', :project_id => Project.first.id)}')" %>
+      <%= javascript_tag "observeProjectTagsField('#{url_for(:controller => 'auto_completes', :action => 'project_tags')}')" %>
     </div>
   <% end -%>
 </p>
--- a/vendor/plugins/redmine_tags/app/views/projects/_tagcloud.html.erb	Mon Nov 19 18:58:29 2012 +0000
+++ b/vendor/plugins/redmine_tags/app/views/projects/_tagcloud.html.erb	Thu Nov 29 14:38:12 2012 +0000
@@ -1,6 +1,3 @@
-<% content_for :header_tags do %>
-    <%= stylesheet_link_tag 'redmine_tags', :plugin => 'redmine_tags' %>
-<% end %>
 
 <div id="tags">
 <%= render_tags_list(Project.available_tags, :style => :cloud) %>
--- a/vendor/plugins/redmine_tags/app/views/projects/_tags_form.html.erb	Mon Nov 19 18:58:29 2012 +0000
+++ b/vendor/plugins/redmine_tags/app/views/projects/_tags_form.html.erb	Thu Nov 29 14:38:12 2012 +0000
@@ -6,6 +6,6 @@
   </p>
   <div id="project_tag_candidates" class="autocomplete"></div>
   <%= javascript_include_tag 'tags_input', :plugin => 'redmine_tags' %>
-  <%= javascript_tag "observeProjectTagsField('#{url_for(:controller => 'auto_completes', :action => 'project_tags', :project_id => Project.first.id)}', false)" %>  
+  <%= javascript_tag "observeProjectTagsField('#{url_for(:controller => 'auto_completes', :action => 'project_tags')}', false)" %>
 </div>
 <% end -%>
\ No newline at end of file
--- a/vendor/plugins/redmine_tags/app/views/tags/index.html.erb	Mon Nov 19 18:58:29 2012 +0000
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,13 +0,0 @@
-<% content_for :header_tags do %>
-    <%= auto_discovery_link_tag(:atom, {:action => 'index', :format => 'atom', :key => User.current.rss_key}) %>
-    <%= stylesheet_link_tag 'redmine_tags', :plugin => 'redmine_tags' %>
-<% end %>
-
-
-<div style="clear:both;"></div>
-<h2>
-  <%= l("label_project_tags_all") %>
-</h2>
-
-<%= render_tags_list(Project.available_tags, :style => :cloud) %>
-
--- a/vendor/plugins/redmine_tags/lib/redmine_tags/patches/project_patch.rb	Mon Nov 19 18:58:29 2012 +0000
+++ b/vendor/plugins/redmine_tags/lib/redmine_tags/patches/project_patch.rb	Thu Nov 29 14:38:12 2012 +0000
@@ -13,38 +13,12 @@
           unloadable
 
           attr_accessor :tag_list
-
           acts_as_taggable
 
         end
       end
 
-      def before_save_with_save_tags()
-#        debugger
-        logger.error { "GONNA SAVE TAG LIST" }
-
-
-#        params[:tag_list]
-        
-        
-        # logger.error { @project.name }
-
-    #    if params && params[:project] && !params[:project][:tag_list].nil?
-    #      old_tags = context[:project].tag_list.to_s
-    #      context[:project].tag_list = params[:project][:tag_list]
-    #      new_tags = context[:project].tag_list.to_s
-    #
-    #      unless (old_tags == new_tags || context[:project].current_journal.blank?)
-    #        context[:project].current_journal.details << JournalDetail.new(:property => 'attr',
-    #                                                                     :prop_key => 'tag_list',
-    #                                                                     :old_value => old_tags,
-    #                                                                     :value => new_tags)
-    #      end
-    #    end
-      end
-      
       module InstanceMethods
-        
       end
 
       module ClassMethods
@@ -64,7 +38,7 @@
           name_like = options[:name_like]
           options = {}
           visible   = ARCondition.new
-                  
+
           visible << ["#{Project.table_name}.is_public = '1'"]
 
           if name_like
@@ -73,7 +47,7 @@
 
           options[:conditions] = visible.conditions
 
-          self.all_tag_counts(options)          
+          self.all_tag_counts(options)
         end
       end
     end
--- a/vendor/plugins/redmine_tags/lib/redmine_tags/patches/projects_controller_patch.rb	Mon Nov 19 18:58:29 2012 +0000
+++ b/vendor/plugins/redmine_tags/lib/redmine_tags/patches/projects_controller_patch.rb	Thu Nov 29 14:38:12 2012 +0000
@@ -3,11 +3,11 @@
 
 module RedmineTags
   module Patches
-    module ProjectsControllerPatch      
+    module ProjectsControllerPatch
       def self.included(base)
         base.send(:include, InstanceMethods)
-        base.class_eval do          
-          unloadable 
+        base.class_eval do
+          unloadable
           skip_before_filter :authorize, :only => [:set_fieldset_status]
           skip_before_filter :find_project, :only => [:set_fieldset_status]
           before_filter :add_tags_to_project, :only => [:save, :update]
@@ -17,7 +17,7 @@
       end
 
       module InstanceMethods
-                
+
         def add_tags_to_project
 
           if params && params[:project] && !params[:project][:tag_list].nil?
@@ -57,17 +57,17 @@
           else
             @myproj_status = session[:my_projects_fieldset_status]
           end
-                    
+
           if session[:filters_fieldset_status].nil?
             @filter_status = "false"
           else
             @filter_status = session[:filters_fieldset_status]
           end
-          
+
           if params && params[:project] && !params[:project][:tag_list].nil?
             @filter_status = "true"
           end
-                                      
+
         end
 
         # Lists visible projects. Paginator is for top-level projects only
@@ -78,17 +78,17 @@
           get_fieldset_statuses
 
           respond_to do |format|
-            format.html { 
+            format.html {
               paginate_projects
-              
-              @projects = Project.visible_roots.find(@projects, :offset => @offset, :limit => @limit, :order => sort_clause) 
+
+              @projects = Project.visible_roots.find(@projects, :offset => @offset, :limit => @limit, :order => sort_clause)
 
               if User.current.logged?
                 # seems sort_by gives us case-sensitive ordering, which we don't want
                 #          @user_projects = User.current.projects.sort_by(&:name)
                 @user_projects = User.current.projects.all(:order => :name)
               end
-              
+
               render :template => 'projects/index.html.erb', :layout => !request.xhr?
             }
             format.api {
@@ -112,8 +112,8 @@
 
         private
 
-        def filter_projects                  
-          @question = (params[:q] || "").strip     
+        def filter_projects
+          @question = (params[:q] || "").strip
 
           if params.has_key?(:project)
             @tag_list = (params[:project][:tag_list] || "").strip.split(",")
@@ -126,7 +126,7 @@
           else
             @projects = Project.visible_roots.find(Project.visible.search_by_question(@question))
           end
-  
+
           unless @tag_list.empty?
             @tagged_projects_ids = Project.visible.tagged_with(@tag_list).collect{ |project| Project.find(project.id).root }
             @projects = @projects & @tagged_projects_ids
--- a/vendor/plugins/redmine_tags/lib/redmine_tags/patches/projects_helper_patch.rb	Mon Nov 19 18:58:29 2012 +0000
+++ b/vendor/plugins/redmine_tags/lib/redmine_tags/patches/projects_helper_patch.rb	Thu Nov 29 14:38:12 2012 +0000
@@ -5,12 +5,13 @@
       def self.included(base) # :nodoc:
         base.send(:include, InstanceMethods)
         base.send(:include, TagsHelper)
+
         base.class_eval do
           unloadable
         end
       end
 
-      module InstanceMethods        
+      module InstanceMethods
         # Renders a tree of projects that the current user does not belong
         # to, or of all projects if the current user is not logged in.  The
         # given collection may be a subset of the whole project tree
@@ -19,30 +20,30 @@
         # description, manager(s), creation date, last activity date,
         # general activity level, whether there is anything actually hosted
         # here for the project, etc.
-        def render_project_table_with_filtering(projects, question)          
+        def render_project_table_with_filtering(projects, question)
           custom_fields = ""
           s = ""
           if projects.any?
             tokens = RedmineProjectFiltering.calculate_tokens(question, custom_fields)
-            
+
             s << "<div class='autoscroll'>"
             s << "<table class='list projects'>"
             s << "<thead><tr>"
-        
+
             s << sort_header_tag('name', :caption => l("field_name"))
             s << "<th class='tags'>" << l("tags") << "</th>"
             s << "<th class='managers'>" << l("label_managers") << "</th>"
             s << sort_header_tag('created_on', :default_order => 'desc')
             s << sort_header_tag('updated_on', :default_order => 'desc')
-        
+
             s << "</tr></thead><tbody>"
-        
+
             original_project = @project
-        
+
             projects.each do |project|
               s << render_project_in_table_with_filtering(project, cycle('odd', 'even'), 0, tokens)
             end
-        
+
             s << "</table>"
           else
             s << "\n"
@@ -52,7 +53,7 @@
           s
         end
 
-        def render_project_in_table_with_filtering(project, oddeven, level, tokens)          
+        def render_project_in_table_with_filtering(project, oddeven, level, tokens)
           # set the project environment to please macros.
           @project = project
 
@@ -72,7 +73,7 @@
           s << "<td class='tags' align=top>" << project.tag_counts.collect{ |t| render_project_tag_link(t) }.join(', ') << "</td>"
 
           s << "<td class='managers' align=top>"
-           
+
           u = project.users_by_role
           if u
             u.keys.each do |r|
@@ -91,7 +92,7 @@
           end
 
           s << "</td>"
-          
+
           s << "<td class='created_on' align=top>" << format_date(project.created_on) << "</td>"
           s << "<td class='updated_on' align=top>" << format_date(project.updated_on) << "</td>"
 
@@ -105,9 +106,9 @@
 
           s
         end
-        
-        
-        
+
+
+
         # Renders a tree of projects as a nested set of unordered lists
         # The given collection may be a subset of the whole project tree
         # (eg. some intermediate nodes are private and can not be seen)
@@ -116,7 +117,7 @@
           if projects.any?
             tokens = RedmineProjectFiltering.calculate_tokens(question, custom_fields)
             debugger
-            
+
 
             ancestors = []
             original_project = @project
@@ -128,14 +129,14 @@
               else
                 ancestors.pop
                 s << "</li>"
-                while (ancestors.any? && !project.is_descendant_of?(ancestors.last)) 
+                while (ancestors.any? && !project.is_descendant_of?(ancestors.last))
                   ancestors.pop
                   s << "</ul></li>"
                 end
               end
               classes = (ancestors.empty? ? 'root' : 'child')
               s << "<li class='#{classes}'><div class='#{classes}'>" +
-                link_to( highlight_tokens(project.name, tokens), 
+                link_to( highlight_tokens(project.name, tokens),
                   {:controller => 'projects', :action => 'show', :id => project},
                   :class => "project #{User.current.member_of?(project) ? 'my-project' : nil}"
                 )
@@ -146,7 +147,7 @@
            #    value = value_model.present? ? value_model.value : nil
            #    s << "<li><b>#{field.name.humanize}:</b> #{highlight_tokens(value, tokens)}</li>" if value.present?
            #  end
-              
+
               s << "</ul>"
               s << "<div class='clear'></div>"
               unless project.description.blank?
@@ -163,7 +164,7 @@
           end
           s.join "\n"
         end
-        
+
         # Renders a tree of projects where the current user belongs
         # as a nested set of unordered lists
         # The given collection may be a subset of the whole project tree
@@ -193,9 +194,9 @@
           s
 
         end
-        
-        
-        
+
+
+
 
         def render_my_project_in_hierarchy_with_tags(project)
 
@@ -215,7 +216,7 @@
             else
               s << " <span class='private'>" << l(:field_is_private) << "</span>"
             end
-           
+
             tc = project.tag_counts
             if tc.empty?
               s << " <span class='no-tags'>" << l(:field_no_tags) << "</span>"
@@ -242,15 +243,15 @@
 
         end
 
-        
-        
+
+
         private
-        
+
         # copied from search_helper. This one doesn't escape html or limit the text length
         def highlight_tokens(text, tokens)
           return text unless text && tokens && !tokens.empty?
           re_tokens = tokens.collect {|t| Regexp.escape(t)}
-          regexp = Regexp.new "(#{re_tokens.join('|')})", Regexp::IGNORECASE    
+          regexp = Regexp.new "(#{re_tokens.join('|')})", Regexp::IGNORECASE
           result = ''
           text.split(regexp).each_with_index do |words, i|
             words = words.mb_chars
@@ -263,7 +264,7 @@
           end
           result
         end
-      
+
       end
     end
   end