annotate hmm/hmm.h @ 244:f599563a4663

* reverting names to lower-case for C (as opposed to mixed-case for C++)
  -- this is how Mark L had it and he was probably right

#ifndef _HMM_H
#define _HMM_H

/*
 *  hmm.h
 *  soundbite
 *
 *  Created by Mark Levy on 12/02/2006.
 *  Copyright 2006 Centre for Digital Music, Queen Mary, University of London. All rights reserved.
 *
 */

#ifndef PI    
#define PI 3.14159265358979323846264338327950288
#endif 

typedef struct _model_t {
	int N;			/* number of states */
	double* p0;		/* initial probs */
	double** a;		/* transition probs */
	int L;			/* dimensionality of data */
	double** mu;	/* state means */
	double** cov;	/* covariance, tied between all states */
} model_t;

void hmm_train(double** x, int T, model_t* model);							/* with scaling */
void forward_backwards(double*** xi, double** gamma, double* loglik, double* loglik1, double* loglik2, int iter, 
					   int N, int T, double* p0, double** a, double** b);
void baum_welch(double* p0, double** a, double** mu, double** cov, int N, int T, int L, double** x, double*** xi, double** gamma);
void viterbi_decode(double** x, int T, model_t* model, int* q);				/* using logs */
model_t* hmm_init(double** x, int T, int L, int N);
void hmm_close(model_t* model);
void invert(double** cov, int L, double** icov, double* detcov);			/* uses LAPACK (included with Mac OSX) */
double gauss(double* x, int L, double* mu, double** icov, double detcov, double* y, double* z);
double loggauss(double* x, int L, double* mu, double** icov, double detcov, double* y, double* z);
void hmm_print(model_t* model);

#endif