diff pyCSalgos/GAP/GAP.py @ 52:768b57e446ab

Created Analysis.py and working

--- a/pyCSalgos/GAP/GAP.py	Wed Dec 07 12:44:19 2011 +0000
+++ b/pyCSalgos/GAP/GAP.py	Thu Dec 08 09:05:04 2011 +0000
@@ -5,134 +5,13 @@
 @author: ncleju
 """
 
-#from numpy import *
-#from scipy import *
+
 import numpy
 import numpy.linalg
 import scipy as sp
-#import scipy.stats #from scipy import stats
-#import scipy.linalg #from scipy import lnalg
+
 import math
 
-from numpy.random import RandomState
-rng = RandomState()
-
-def Generate_Analysis_Operator(d, p):
-  # generate random tight frame with equal column norms
-  if p == d:
-    T = rng.randn(d,d);
-    [Omega, discard] = numpy.qr(T);
-  else:
-    Omega = rng.randn(p, d);
-    T = numpy.zeros((p, d));
-    tol = 1e-8;
-    max_j = 200;
-    j = 1;
-    while (sum(sum(abs(T-Omega))) > numpy.dot(tol,numpy.dot(p,d)) and j < max_j):
-        j = j + 1;
-        T = Omega;
-        [U, S, Vh] = numpy.linalg.svd(Omega);
-        V = Vh.T
-        #Omega = U * [eye(d); zeros(p-d,d)] * V';
-        Omega2 = numpy.dot(numpy.dot(U, numpy.concatenate((numpy.eye(d), numpy.zeros((p-d,d))))), V.transpose())
-        #Omega = diag(1./sqrt(diag(Omega*Omega')))*Omega;
-        Omega = numpy.dot(numpy.diag(1.0 / numpy.sqrt(numpy.diag(numpy.dot(Omega2,Omega2.transpose())))), Omega2)
-    #end
-    ##disp(j);
-    #end
-  return Omega
-
-
-def Generate_Data_Known_Omega(Omega, d,p,m,k,noiselevel, numvectors, normstr):
-  #function [x0,y,M,LambdaMat] = Generate_Data_Known_Omega(Omega, d,p,m,k,noiselevel, numvectors, normstr)
-  
-  # Building an analysis problem, which includes the ingredients: 
-  #   - Omega - the analysis operator of size p*d
-  #   - M is anunderdetermined measurement matrix of size m*d (m<d)
-  #   - x0 is a vector of length d that satisfies ||Omega*x0||=p-k
-  #   - Lambda is the true location of these k zeros in Omega*x0
-  #   - a measurement vector y0=Mx0 is computed
-  #   - noise contaminated measurement vector y is obtained by
-  #     y = y0 + n where n is an additive gaussian noise with norm(n,2)/norm(y0,2) = noiselevel
-  # Added by Nic:
-  #   - Omega = analysis operator
-  #   - normstr: if 'l0', generate l0 sparse vector (unchanged). If 'l1',
-  #   generate a vector of Laplacian random variables (gamma) and
-  #   pseudoinvert to find x
-
-  # Omega is known as input parameter
-  #Omega=Generate_Analysis_Operator(d, p);
-  # Omega = randn(p,d);
-  # for i = 1:size(Omega,1)
-  #     Omega(i,:) = Omega(i,:) / norm(Omega(i,:));
-  # end
-  
-  #Init
-  LambdaMat = numpy.zeros((k,numvectors))
-  x0 = numpy.zeros((d,numvectors))
-  y = numpy.zeros((m,numvectors))
-  realnoise = numpy.zeros((m,numvectors))
-  
-  M = rng.randn(m,d);
-  
-  #for i=1:numvectors
-  for i in range(0,numvectors):
-    
-    # Generate signals
-    #if strcmp(normstr,'l0')
-    if normstr == 'l0':
-        # Unchanged
-        
-        #Lambda=randperm(p); 
-        Lambda = rng.permutation(int(p));
-        Lambda = numpy.sort(Lambda[0:k]); 
-        LambdaMat[:,i] = Lambda; # store for output
-        
-        # The signal is drawn at random from the null-space defined by the rows 
-        # of the matreix Omega(Lambda,:)
-        [U,D,Vh] = numpy.linalg.svd(Omega[Lambda,:]);
-        V = Vh.T
-        NullSpace = V[:,k:];
-        #print numpy.dot(NullSpace, rng.randn(d-k,1)).shape
-        #print x0[:,i].shape
-        x0[:,i] = numpy.squeeze(numpy.dot(NullSpace, rng.randn(d-k,1)));
-        # Nic: add orthogonality noise
-        #     orthonoiseSNRdb = 6;
-        #     n = randn(p,1);
-        #     #x0(:,i) = x0(:,i) + n / norm(n)^2 * norm(x0(:,i))^2 / 10^(orthonoiseSNRdb/10);
-        #     n = n / norm(n)^2 * norm(Omega * x0(:,i))^2 / 10^(orthonoiseSNRdb/10);
-        #     x0(:,i) = pinv(Omega) * (Omega * x0(:,i) + n);
-        
-    #elseif strcmp(normstr, 'l1')
-    elif normstr == 'l1':
-        print('Nic says: not implemented yet')
-        raise Exception('Nic says: not implemented yet')
-        #gamma = laprnd(p,1,0,1);
-        #x0(:,i) = Omega \ gamma;
-    else:
-        #error('normstr must be l0 or l1!');
-        print('Nic says: not implemented yet')
-        raise Exception('Nic says: not implemented yet')
-    #end
-    
-    # Acquire measurements
-    y[:,i]  = numpy.dot(M, x0[:,i])
-
-    # Add noise
-    t_norm = numpy.linalg.norm(y[:,i],2)
-    n = numpy.squeeze(rng.randn(m, 1))
-    # In case n i just a number, nuit an array, norm() fails
-    if n.ndim == 0:
-      nnorm = abs(n)
-    else:
-      nnorm = numpy.linalg.norm(n, 2);
-    y[:,i] = y[:,i] + noiselevel * t_norm * n / nnorm
-    realnoise[:,i] = noiselevel * t_norm * n / nnorm
-  #end
-
-  return x0,y,M,LambdaMat,realnoise
-
-#####################
 
 #function [xhat, arepr, lagmult] = ArgminOperL2Constrained(y, M, MH, Omega, OmegaH, Lambdahat, xinit, ilagmult, params)
 def ArgminOperL2Constrained(y, M, MH, Omega, OmegaH, Lambdahat, xinit, ilagmult, params):