annotate scripts_R/PlotOutliersCountry.R @ 70:cc028157502a branch-tests

scripts R
author Maria Panteli
date Fri, 22 Sep 2017 16:29:32 +0100
parents
children bde45ce0eeab
rev   line source
Maria@70 1 source("MetadataPlots.R")
Maria@70 2
Maria@70 3 PlotCountryOutliers(df=read.csv("data/global_outliers.csv",header=TRUE), output="data/global_outliers.pdf")
Maria@70 4 PlotCountryOutliers(df=read.csv("data/global_outliers_rhy.csv",header=TRUE), output="data/global_outliers_rhy.pdf")
Maria@70 5 PlotCountryOutliers(df=read.csv("data/global_outliers_mel.csv",header=TRUE), output="data/global_outliers_mel.pdf")
Maria@70 6 PlotCountryOutliers(df=read.csv("data/global_outliers_mfc.csv",header=TRUE), output="data/global_outliers_mfc.pdf")
Maria@70 7 PlotCountryOutliers(df=read.csv("data/global_outliers_chr.csv",header=TRUE), output="data/global_outliers_chr.pdf")
Maria@70 8 PlotCountryOutliers(df=read.csv("data/spatial_outliers.csv",header=TRUE), output="data/spatial_outliers.pdf")
Maria@70 9 #PlotCountryOutliers(df=read.csv("data/global_outliers_rhy_1band.csv",header=TRUE))
Maria@70 10
Maria@70 11 require(graphics)
Maria@70 12 par(mfrow=c(2,2))
Maria@70 13 g1<-PlotCountryOutliers(df=read.csv("data/global_outliers_rhy.csv",header=TRUE))
Maria@70 14 g2<-PlotCountryOutliers(df=read.csv("data/global_outliers_mel.csv",header=TRUE))
Maria@70 15 g3<-PlotCountryOutliers(df=read.csv("data/global_outliers_mfc.csv",header=TRUE))
Maria@70 16 g4<-PlotCountryOutliers(df=read.csv("data/global_outliers_chr.csv",header=TRUE))
Maria@70 17 #do.call(addMapLegend, c(g3,labelFontSize=0.7, legendWidth=0.5, tcl=0.3, legendMar = 7, legendLabels="all",horizontal=T, legendIntervals="page"))
Maria@70 18 #legend("bottomleft", legend = c(paste(seq(100,1,-10),'%'), 'missing countries'), fill = c(heat.colors(10, alpha = 1), 'grey'), cex = 0.56, bty = "n")
Maria@70 19 legend("right", legend = c(paste(seq(90,0,-10),'-',seq(100,10,-10),'%'), 'NA'), fill = c(heat.colors(10, alpha = 1), 'grey'), cex = 0.56, bty = "o",bg="white",box.lwd=0,box.col="white")