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2 "cells": [
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3 {
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4 "cell_type": "code",
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5 "execution_count": 1,
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6 "metadata": {},
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7 "outputs": [
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8 {
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9 "name": "stderr",
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10 "output_type": "stream",
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11 "text": [
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12 "/homes/mp305/anaconda/lib/python2.7/site-packages/librosa/core/audio.py:33: UserWarning: Could not import scikits.samplerate. Falling back to scipy.signal\n",
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13 " warnings.warn('Could not import scikits.samplerate. '\n"
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14 ]
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15 }
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16 ],
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17 "source": [
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18 "import numpy as np\n",
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19 "\n",
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20 "%matplotlib inline\n",
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21 "import matplotlib.pyplot as plt\n",
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22 "\n",
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23 "%load_ext autoreload\n",
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24 "%autoreload 2\n",
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25 "\n",
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26 "import sys\n",
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27 "sys.path.append('../')\n",
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28 "import scripts.load_dataset as load_dataset\n",
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29 "import scripts.map_and_average as mapper\n",
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30 "import scripts.classification\n",
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31 "import scripts.outliers as outliers"
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32 ]
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33 },
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34 {
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35 "cell_type": "code",
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36 "execution_count": null,
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37 "metadata": {},
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38 "outputs": [
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39 {
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40 "name": "stderr",
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41 "output_type": "stream",
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42 "text": [
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43 "/homes/mp305/anaconda/lib/python2.7/site-packages/IPython/core/interactiveshell.py:2822: DtypeWarning: Columns (0,1,2,4,5,6,7,8,10,11,12,13,14,15,16,17,19,21,22,23,24,25,26,27,29,31,35,38,39,40,41,44,45,48,55,56,58,59,60,61,62,63,64,65,66,67,68,69,70,71,72,73,74,75,76,77,78,79,80,81,82,83,84,85,86,93,95,96) have mixed types. Specify dtype option on import or set low_memory=False.\n",
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44 " if self.run_code(code, result):\n"
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45 ]
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46 }
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47 ],
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48 "source": [
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49 "OUTPUT_FILES = load_dataset.OUTPUT_FILES\n",
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50 "n_iters = 10\n",
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51 "df = load_dataset.sample_dataset(csv_file=load_dataset.METADATA_FILE)"
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52 ]
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53 },
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54 {
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55 "cell_type": "code",
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56 "execution_count": null,
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57 "metadata": {},
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58 "outputs": [],
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59 "source": [
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60 "df.shape"
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61 ]
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62 },
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63 {
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64 "cell_type": "code",
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65 "execution_count": null,
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66 "metadata": {},
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67 "outputs": [
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68 {
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69 "name": "stdout",
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70 "output_type": "stream",
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71 "text": [
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72 "iteration 0\n",
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73 "file 0 of 5037\n",
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74 "loading speech/music segments...\n",
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75 "extracting onset patterns and mfccs...\n",
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76 "extracting chroma...\n",
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77 "load precomputed pitch bihist /import/c4dm-05/mariap/Melodia-melody-8sec/\n",
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81 "extracting chroma...\n",
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82 "load precomputed pitch bihist /import/c4dm-05/mariap/Melodia-melody-8sec/\n",
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86 "extracting chroma...\n",
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87 "load precomputed pitch bihist /import/c4dm-05/mariap/Melodia-melody-8sec/\n",
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546 "load precomputed pitch bihist /import/c4dm-05/mariap/Melodia-melody-8sec/\n",
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m@21
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547 "file 97 of 5037\n",
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548 "loading speech/music segments...\n",
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549 "extracting onset patterns and mfccs...\n",
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550 "extracting chroma...\n",
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551 "load precomputed pitch bihist /import/c4dm-05/mariap/Melodia-melody-8sec/\n",
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552 "file 98 of 5037\n",
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553 "loading speech/music segments...\n",
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554 "extracting onset patterns and mfccs...\n",
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555 "extracting chroma...\n",
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556 "load precomputed pitch bihist /import/c4dm-05/mariap/Melodia-melody-8sec/\n",
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557 "file 99 of 5037\n",
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558 "loading speech/music segments...\n",
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559 "extracting onset patterns and mfccs...\n",
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560 "extracting chroma...\n",
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561 "load precomputed pitch bihist /import/c4dm-05/mariap/Melodia-melody-8sec/\n",
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562 "file 100 of 5037\n",
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563 "loading speech/music segments...\n",
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564 "extracting onset patterns and mfccs...\n",
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565 "extracting chroma...\n",
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566 "load precomputed pitch bihist /import/c4dm-05/mariap/Melodia-melody-8sec/\n",
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567 "file 101 of 5037\n",
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568 "loading speech/music segments...\n",
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569 "extracting onset patterns and mfccs...\n",
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570 "extracting chroma...\n",
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571 "load precomputed pitch bihist /import/c4dm-05/mariap/Melodia-melody-8sec/\n",
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572 "file 102 of 5037\n",
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573 "loading speech/music segments...\n",
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574 "extracting onset patterns and mfccs...\n",
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575 "extracting chroma...\n",
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576 "load precomputed pitch bihist /import/c4dm-05/mariap/Melodia-melody-8sec/\n",
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577 "file 103 of 5037\n",
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578 "loading speech/music segments...\n",
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579 "extracting onset patterns and mfccs...\n",
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580 "extracting chroma...\n",
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581 "load precomputed pitch bihist /import/c4dm-05/mariap/Melodia-melody-8sec/\n",
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582 "file 104 of 5037\n",
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583 "loading speech/music segments...\n",
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584 "extracting onset patterns and mfccs...\n",
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585 "extracting chroma...\n",
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586 "load precomputed pitch bihist /import/c4dm-05/mariap/Melodia-melody-8sec/\n",
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587 "file 105 of 5037\n",
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588 "loading speech/music segments...\n",
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589 "extracting onset patterns and mfccs...\n",
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590 "extracting chroma...\n",
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591 "load precomputed pitch bihist /import/c4dm-05/mariap/Melodia-melody-8sec/\n",
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592 "file 106 of 5037\n",
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593 "loading speech/music segments...\n",
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594 "extracting onset patterns and mfccs...\n",
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595 "extracting chroma...\n",
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596 "load precomputed pitch bihist /import/c4dm-05/mariap/Melodia-melody-8sec/\n",
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597 "file 107 of 5037\n",
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598 "loading speech/music segments...\n",
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599 "extracting onset patterns and mfccs...\n",
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600 "extracting chroma...\n",
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601 "load precomputed pitch bihist /import/c4dm-05/mariap/Melodia-melody-8sec/\n",
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602 "file 108 of 5037\n",
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603 "loading speech/music segments...\n",
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604 "extracting onset patterns and mfccs...\n",
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605 "extracting chroma...\n",
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606 "load precomputed pitch bihist /import/c4dm-05/mariap/Melodia-melody-8sec/\n",
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607 "file 109 of 5037\n",
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608 "loading speech/music segments...\n",
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609 "extracting onset patterns and mfccs...\n",
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610 "extracting chroma...\n",
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611 "load precomputed pitch bihist /import/c4dm-05/mariap/Melodia-melody-8sec/\n",
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612 "file 110 of 5037\n",
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613 "loading speech/music segments...\n",
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614 "extracting onset patterns and mfccs...\n",
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615 "extracting chroma...\n",
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616 "load precomputed pitch bihist /import/c4dm-05/mariap/Melodia-melody-8sec/\n",
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617 "file 111 of 5037\n",
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618 "loading speech/music segments...\n",
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619 "extracting onset patterns and mfccs...\n",
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620 "extracting chroma...\n",
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621 "load precomputed pitch bihist /import/c4dm-05/mariap/Melodia-melody-8sec/\n",
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622 "file 112 of 5037\n",
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623 "loading speech/music segments...\n",
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624 "extracting onset patterns and mfccs...\n",
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625 "extracting chroma...\n",
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626 "load precomputed pitch bihist /import/c4dm-05/mariap/Melodia-melody-8sec/\n",
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627 "file 113 of 5037\n",
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628 "loading speech/music segments...\n",
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629 "extracting onset patterns and mfccs...\n",
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|
630 "extracting chroma...\n",
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631 "load precomputed pitch bihist /import/c4dm-05/mariap/Melodia-melody-8sec/\n",
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632 "file 114 of 5037\n",
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633 "loading speech/music segments...\n",
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634 "extracting onset patterns and mfccs...\n",
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|
635 "extracting chroma...\n",
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636 "load precomputed pitch bihist /import/c4dm-05/mariap/Melodia-melody-8sec/\n",
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637 "file 115 of 5037\n",
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638 "loading speech/music segments...\n",
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639 "extracting onset patterns and mfccs...\n",
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640 "extracting chroma...\n",
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641 "load precomputed pitch bihist /import/c4dm-05/mariap/Melodia-melody-8sec/\n",
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642 "file 116 of 5037\n",
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643 "loading speech/music segments...\n",
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644 "extracting onset patterns and mfccs...\n",
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645 "extracting chroma...\n",
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646 "load precomputed pitch bihist /import/c4dm-05/mariap/Melodia-melody-8sec/\n",
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647 "file 117 of 5037\n",
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648 "loading speech/music segments...\n",
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649 "extracting onset patterns and mfccs...\n",
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650 "extracting chroma...\n",
|
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651 "load precomputed pitch bihist /import/c4dm-05/mariap/Melodia-melody-8sec/\n",
|
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|
652 "file 118 of 5037\n",
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653 "loading speech/music segments...\n",
|
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654 "extracting onset patterns and mfccs...\n",
|
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|
655 "extracting chroma...\n",
|
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656 "load precomputed pitch bihist /import/c4dm-05/mariap/Melodia-melody-8sec/\n",
|
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|
657 "file 119 of 5037\n",
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658 "loading speech/music segments...\n",
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659 "extracting onset patterns and mfccs...\n",
|
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|
660 "extracting chroma...\n",
|
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661 "load precomputed pitch bihist /import/c4dm-05/mariap/Melodia-melody-8sec/\n",
|
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|
662 "file 120 of 5037\n",
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663 "loading speech/music segments...\n",
|
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664 "extracting onset patterns and mfccs...\n",
|
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|
665 "extracting chroma...\n",
|
|
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666 "load precomputed pitch bihist /import/c4dm-05/mariap/Melodia-melody-8sec/\n",
|
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667 "file 121 of 5037\n",
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668 "loading speech/music segments...\n",
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669 "extracting onset patterns and mfccs...\n",
|
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|
670 "extracting chroma...\n",
|
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671 "load precomputed pitch bihist /import/c4dm-05/mariap/Melodia-melody-8sec/\n",
|
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|
672 "file 122 of 5037\n",
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673 "loading speech/music segments...\n",
|
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|
674 "extracting onset patterns and mfccs...\n",
|
|
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|
675 "extracting chroma...\n",
|
|
m@21
|
676 "load precomputed pitch bihist /import/c4dm-05/mariap/Melodia-melody-8sec/\n",
|
|
m@21
|
677 "file 123 of 5037\n",
|
|
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|
678 "loading speech/music segments...\n",
|
|
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|
679 "extracting onset patterns and mfccs...\n",
|
|
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|
680 "extracting chroma...\n",
|
|
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|
681 "load precomputed pitch bihist /import/c4dm-05/mariap/Melodia-melody-8sec/\n",
|
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|
682 "file 124 of 5037\n",
|
|
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|
683 "loading speech/music segments...\n",
|
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|
684 "extracting onset patterns and mfccs...\n",
|
|
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|
685 "extracting chroma...\n",
|
|
m@21
|
686 "load precomputed pitch bihist /import/c4dm-05/mariap/Melodia-melody-8sec/\n",
|
|
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|
687 "file 125 of 5037\n",
|
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|
688 "loading speech/music segments...\n",
|
|
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|
689 "extracting onset patterns and mfccs...\n"
|
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|
690 ]
|
|
m@21
|
691 }
|
|
m@21
|
692 ],
|
|
m@21
|
693 "source": [
|
|
m@15
|
694 "for n in range(n_iters):\n",
|
|
m@15
|
695 " print \"iteration %d\" % n\n",
|
|
m@15
|
696 " load_dataset.OUTPUT_FILES = [output_file.split('.pickle')[0]+'_'+str(n)+'.pickle' for \n",
|
|
m@15
|
697 " output_file in OUTPUT_FILES]\n",
|
|
m@15
|
698 " load_dataset.features_for_train_test_sets(df, write_output=True)"
|
|
m@15
|
699 ]
|
|
m@15
|
700 },
|
|
m@15
|
701 {
|
|
m@15
|
702 "cell_type": "code",
|
|
m@15
|
703 "execution_count": null,
|
|
m@15
|
704 "metadata": {
|
|
m@15
|
705 "collapsed": true
|
|
m@15
|
706 },
|
|
m@15
|
707 "outputs": [],
|
|
m@15
|
708 "source": [
|
|
m@15
|
709 "for n in range(n_iters):\n",
|
|
m@15
|
710 " print \"iteration %d\" % n\n",
|
|
m@15
|
711 " \n",
|
|
m@15
|
712 " print \"mapping...\"\n",
|
|
m@15
|
713 " mapper.INPUT_FILES = [output_file.split('.pickle')[0]+'_'+str(n)+'.pickle' for \n",
|
|
m@15
|
714 " output_file in OUTPUT_FILES]\n",
|
|
m@15
|
715 " _, _, ldadata_list, _, _, Y, Yaudio = mapper.lda_map_and_average_frames(min_variance=0.99)\n",
|
|
m@15
|
716 " X = np.concatenate(ldadata_list)\n",
|
|
m@15
|
717 " \n",
|
|
m@15
|
718 " # classification and confusion\n",
|
|
m@15
|
719 " print \"classifying...\"\n",
|
|
Maria@18
|
720 " traininds, testinds = classification.get_train_test_indices()\n",
|
|
Maria@18
|
721 " X_train, Y_train, X_test, Y_test = classification.get_train_test_sets(X, Y, traininds, testinds)\n",
|
|
Maria@18
|
722 " accuracy, _ = classification.confusion_matrix(X_train, Y_train, X_test, Y_test, saveCF=False, plots=False)\n",
|
|
m@15
|
723 " print accuracy\n",
|
|
m@15
|
724 " \n",
|
|
m@15
|
725 " # outliers\n",
|
|
m@15
|
726 " print \"detecting outliers...\"\n",
|
|
Maria@18
|
727 " ddf = outliers.load_metadata(Yaudio, metadata_file=load_dataset.METADATA_FILE)\n",
|
|
m@15
|
728 " df_global, threshold, MD = get_outliers_df(X, Y, chi2thr=0.999)\n",
|
|
m@15
|
729 " print_most_least_outliers_topN(df_global, N=10)\n",
|
|
m@15
|
730 " \n",
|
|
m@15
|
731 " # write output\n",
|
|
m@15
|
732 " print \"writing file\"\n",
|
|
m@15
|
733 " df_global.to_csv('../data/outliers_'+str(n)+'.csv', index=False)"
|
|
m@15
|
734 ]
|
|
m@15
|
735 }
|
|
m@15
|
736 ],
|
|
m@15
|
737 "metadata": {
|
|
m@15
|
738 "kernelspec": {
|
|
m@15
|
739 "display_name": "Python 2",
|
|
m@15
|
740 "language": "python",
|
|
m@15
|
741 "name": "python2"
|
|
m@19
|
742 },
|
|
m@19
|
743 "language_info": {
|
|
m@19
|
744 "codemirror_mode": {
|
|
m@19
|
745 "name": "ipython",
|
|
m@19
|
746 "version": 2
|
|
m@19
|
747 },
|
|
m@19
|
748 "file_extension": ".py",
|
|
m@19
|
749 "mimetype": "text/x-python",
|
|
m@19
|
750 "name": "python",
|
|
m@19
|
751 "nbconvert_exporter": "python",
|
|
m@19
|
752 "pygments_lexer": "ipython2",
|
|
m@19
|
753 "version": "2.7.12"
|
|
m@15
|
754 }
|
|
m@15
|
755 },
|
|
m@15
|
756 "nbformat": 4,
|
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m@17
|
757 "nbformat_minor": 1
|
|
m@15
|
758 }
|
