annotate index.cpp @ 456:0ef029232213 api-inversion

Baby steps with index.cpp audioDB::index_make_shingle uses almost no shared state. Make it use none at all, and then remove it from the audioDB class.
author mas01cr
date Wed, 24 Dec 2008 10:57:27 +0000
parents 93ce12fe2f76
children 913a95f06998
rev   line source
mas01mc@292 1 // LSH indexing
mas01mc@292 2 //
mas01mc@292 3 // Construct a persistent LSH table structure
mas01mc@292 4 // Store at the same location as dbName
mas01mc@292 5 // Naming convention:
mas01mc@292 6 // dbName.lsh.${radius}.${sequenceLength}
mas01mc@292 7 //
mas01mc@292 8 //
mas01mc@292 9 // Author: Michael Casey
mas01mc@292 10 // Date: 23 June 2008
mas01mc@324 11 //
mas01mc@324 12 // 19th August 2008 - added O2_FLAG_LARGE_ADB support
mas01mc@292 13
mas01mc@292 14 #include "audioDB.h"
mas01cr@426 15 #include "audioDB-internals.h"
mas01mc@292 16
mas01mc@292 17 /************************* LSH point index to audioDB conversion *****************/
mas01mc@324 18 Uns32T audioDB::index_to_trackID(Uns32T lshID, Uns32T nPntBits){
mas01mc@324 19 assert(nPntBits);
mas01mc@324 20 return lshID>>nPntBits;
mas01mc@292 21 }
mas01mc@292 22
mas01mc@324 23 Uns32T audioDB::index_to_trackPos(Uns32T lshID, Uns32T nPntBits){
mas01mc@324 24 assert(nPntBits);
mas01mc@324 25 return lshID&((1<<nPntBits)-1);
mas01mc@292 26 }
mas01mc@292 27
mas01mc@324 28 Uns32T audioDB::index_from_trackInfo(Uns32T trackID, Uns32T spos, Uns32T nPntBits){
mas01mc@324 29 assert(nPntBits);
mas01mc@324 30 return (trackID << nPntBits) | spos;
mas01mc@292 31 }
mas01mc@292 32
mas01mc@292 33 /************************* LSH indexing and query initialization *****************/
mas01mc@292 34
mas01mc@292 35 char* audioDB::index_get_name(const char*dbName, double radius, Uns32T sequenceLength){
mas01mc@292 36 char* indexName = new char[MAXSTR];
mas01mc@292 37 // Attempt to make new file
mas01mc@292 38 if(strlen(dbName) > (MAXSTR - 32))
mas01mc@292 39 error("dbName is too long for LSH index filename appendages");
mas01mc@292 40 strncpy(indexName, dbName, MAXSTR);
mas01mc@292 41 sprintf(indexName+strlen(dbName), ".lsh.%019.9f.%d", radius, sequenceLength);
mas01mc@292 42 return indexName;
mas01mc@292 43 }
mas01mc@292 44
mas01mc@292 45 // return true if index exists else return false
mas01mc@292 46 int audioDB::index_exists(const char* dbName, double radius, Uns32T sequenceLength){
mas01mc@292 47 // Test to see if file exists
mas01mc@292 48 char* indexName = index_get_name(dbName, radius, sequenceLength);
mas01mc@292 49 lshfid = open (indexName, O_RDONLY);
mas01mc@292 50 delete[] indexName;
mas01mc@292 51 close(lshfid);
mas01mc@292 52
mas01mc@292 53 if(lshfid<0)
mas01mc@292 54 return false;
mas01mc@292 55 else
mas01mc@292 56 return true;
mas01mc@292 57 }
mas01mc@292 58
mas01mc@324 59 // If we are a server and have a memory-resident index, check the indexName against the resident index (using get_indexName())
mas01mc@324 60 // If they match, i.e. path+dbName_resident == path+dbName_requested, use
mas01mc@324 61 // the memory-resident index.
mas01mc@324 62 // Else allocate a new LSH instance and load the index from disk
mas01mc@308 63 LSH* audioDB::index_allocate(char* indexName, bool load_hashTables){
mas01mc@308 64 LSH* gIndx=SERVER_LSH_INDEX_SINGLETON;
mas01mc@308 65 if(isServer && gIndx && (strncmp(gIndx->get_indexName(), indexName, MAXSTR)==0) )
mas01mc@308 66 audioDB::lsh = gIndx; // Use the global SERVER resident index
mas01mc@308 67 else{
mas01mc@308 68 if(audioDB::lsh)
mas01mc@308 69 delete audioDB::lsh;
mas01mc@308 70 audioDB::lsh = new LSH(indexName, load_hashTables);
mas01mc@308 71 }
mas01mc@308 72 assert(audioDB::lsh);
mas01mc@308 73 return audioDB::lsh;
mas01mc@308 74 }
mas01mc@308 75
mas01mc@292 76 vector<vector<float> >* audioDB::index_initialize_shingles(Uns32T sz){
mas01mc@292 77 if(vv)
mas01mc@292 78 delete vv;
mas01mc@292 79 vv = new vector<vector<float> >(sz);
mas01mc@292 80 for(Uns32T i=0 ; i < sz ; i++)
mas01mc@292 81 (*vv)[i]=vector<float>(dbH->dim*sequenceLength); // allocate shingle storage
mas01mc@292 82 return vv;
mas01mc@292 83 }
mas01mc@292 84
mas01mc@292 85 /******************** LSH indexing audioDB database access forall s \in {S} ***********************/
mas01mc@292 86
mas01mc@292 87 // Prepare the AudioDB database for read access and allocate auxillary memory
mas01mc@292 88 void audioDB::index_initialize(double **snp, double **vsnp, double **spp, double **vspp, Uns32T *dvp) {
mas01mc@324 89 if (!(dbH->flags & O2_FLAG_POWER)) {
mas01mc@324 90 error("INDEXed database must be power-enabled", dbName);
mas01mc@324 91 }
mas01mc@324 92
mas01mc@325 93 double *snpp = 0, *sppp = 0;
mas01mc@324 94
mas01mc@292 95 *dvp = dbH->length / (dbH->dim * sizeof(double)); // number of database vectors
mas01mc@292 96 *snp = new double[*dvp]; // songs norm pointer: L2 norm table for each vector
mas01mc@325 97 snpp = *snp;
mas01mc@292 98 *spp = new double[*dvp]; // song powertable pointer
mas01mc@292 99 sppp = *spp;
mas01mc@325 100
mas01mc@324 101 memcpy(*snp, l2normTable, *dvp * sizeof(double));
mas01mc@292 102 memcpy(*spp, powerTable, *dvp * sizeof(double));
mas01mc@324 103
mas01mc@324 104
mas01mc@292 105 for(Uns32T i = 0; i < dbH->numFiles; i++){
mas01mc@292 106 if(trackTable[i] >= sequenceLength) {
mas01cr@427 107 audiodb_sequence_sum(snpp, trackTable[i], sequenceLength);
mas01cr@427 108 audiodb_sequence_sqrt(snpp, trackTable[i], sequenceLength);
mas01mc@292 109
mas01cr@427 110 audiodb_sequence_sum(sppp, trackTable[i], sequenceLength);
mas01cr@427 111 audiodb_sequence_average(sppp, trackTable[i], sequenceLength);
mas01mc@292 112 }
mas01mc@292 113 snpp += trackTable[i];
mas01mc@292 114 sppp += trackTable[i];
mas01mc@292 115 }
mas01mc@324 116
mas01mc@292 117 *vsnp = *snp;
mas01mc@292 118 *vspp = *spp;
mas01mc@324 119
mas01mc@292 120 // Move the feature vector read pointer to start of fetures in database
mas01mc@292 121 lseek(dbfid, dbH->dataOffset, SEEK_SET);
mas01mc@292 122 }
mas01mc@292 123
mas01mc@292 124
mas01cr@456 125 /********************* LSH shingle construction ***************************/
mas01cr@456 126
mas01cr@456 127 // Construct shingles out of a feature matrix
mas01cr@456 128 // inputs:
mas01cr@456 129 // idx is vector index in feature matrix
mas01cr@456 130 // fvp is base feature matrix pointer double* [numVecs x dbH->dim]
mas01cr@456 131 //
mas01cr@456 132 // pre-conditions:
mas01cr@456 133 // dbH->dim
mas01cr@456 134 // sequenceLength
mas01cr@456 135 // idx < numVectors - sequenceLength + 1
mas01cr@456 136 //
mas01cr@456 137 // post-conditions:
mas01cr@456 138 // (*vv)[idx] contains a shingle with dbH->dim*sequenceLength float values
mas01cr@456 139
mas01cr@456 140 static void audiodb_index_make_shingle(vector<vector<float> >* vv, Uns32T idx, double* fvp, Uns32T dim, Uns32T seqLen){
mas01cr@456 141 assert(idx<(*vv).size());
mas01cr@456 142 vector<float>::iterator ve = (*vv)[idx].end();
mas01cr@456 143 vector<float>::iterator vi = (*vv)[idx].begin();
mas01cr@456 144 // First feature vector in shingle
mas01cr@456 145 if(idx == 0) {
mas01cr@456 146 while(vi!=ve) {
mas01cr@456 147 *vi++ = (float)(*fvp++);
mas01cr@456 148 }
mas01cr@456 149 } else {
mas01cr@456 150 // Not first feature vector in shingle
mas01cr@456 151 vector<float>::iterator ui=(*vv)[idx-1].begin() + dim;
mas01cr@456 152 // Previous seqLen-1 dim-vectors
mas01cr@456 153 while(vi!=ve-dim) {
mas01cr@456 154 *vi++ = *ui++;
mas01cr@456 155 }
mas01cr@456 156 // Move data pointer to next feature vector
mas01cr@456 157 fvp += ( seqLen + idx - 1 ) * dim ;
mas01cr@456 158 // New d-vector
mas01cr@456 159 while(vi!=ve) {
mas01cr@456 160 *vi++ = (float)(*fvp++);
mas01cr@456 161 }
mas01cr@456 162 }
mas01cr@456 163 }
mas01cr@456 164
mas01cr@456 165 // norm shingles
mas01cr@456 166 // in-place norming, no deletions
mas01cr@456 167 // If using power, return number of shingles above power threshold
mas01cr@456 168 int audioDB::index_norm_shingles(vector<vector<float> >* vv, double* snp, double* spp){
mas01cr@456 169 int z = 0; // number of above-threshold shingles
mas01cr@456 170 float l2norm;
mas01cr@456 171 double power;
mas01cr@456 172 float oneOverRadius = 1./(float)sqrt(radius); // Passed radius is really radius^2
mas01cr@456 173 float oneOverSqrtl2NormDivRad = oneOverRadius;
mas01cr@456 174 if(!spp)
mas01cr@456 175 error("LSH indexing and query requires a power feature using -w or -W");
mas01cr@456 176 Uns32T shingleSize = sequenceLength*dbH->dim;
mas01cr@456 177 for(Uns32T a=0; a<(*vv).size(); a++){
mas01cr@456 178 l2norm = (float)(*snp++);
mas01cr@456 179 if(audioDB::normalizedDistance)
mas01cr@456 180 oneOverSqrtl2NormDivRad = (1./l2norm)*oneOverRadius;
mas01cr@456 181
mas01cr@456 182 for(Uns32T b=0; b < shingleSize ; b++)
mas01cr@456 183 (*vv)[a][b]*=oneOverSqrtl2NormDivRad;
mas01cr@456 184
mas01cr@456 185 power = *spp++;
mas01cr@456 186 if(use_absolute_threshold){
mas01cr@456 187 if ( power >= absolute_threshold )
mas01cr@456 188 z++;
mas01cr@456 189 }
mas01cr@456 190 else
mas01cr@456 191 z++;
mas01cr@456 192 }
mas01cr@456 193 return z;
mas01cr@456 194 }
mas01cr@456 195
mas01cr@456 196
mas01mc@292 197 /************************ LSH indexing ***********************************/
mas01mc@292 198 void audioDB::index_index_db(const char* dbName){
mas01mc@292 199 char* newIndexName;
mas01mc@292 200 double *fvp = 0, *sNorm = 0, *snPtr = 0, *sPower = 0, *spPtr = 0;
mas01mc@292 201 Uns32T dbVectors = 0;
mas01mc@292 202
mas01mc@324 203
mas01mc@292 204 printf("INDEX: initializing header\n");
mas01mc@292 205 // Check if audioDB exists, initialize header and open database for read
mas01mc@292 206 forWrite = false;
mas01mc@292 207 initDBHeader(dbName);
mas01mc@292 208
mas01mc@324 209 if(dbH->flags & O2_FLAG_POWER)
mas01mc@324 210 usingPower = true;
mas01mc@324 211
mas01mc@324 212 if(dbH->flags & O2_FLAG_TIMES)
mas01mc@324 213 usingTimes = true;
mas01mc@324 214
mas01mc@292 215 newIndexName = index_get_name(dbName, radius, sequenceLength);
mas01mc@292 216
mas01mc@292 217 // Set unit norming flag override
mas01mc@292 218 audioDB::normalizedDistance = !audioDB::no_unit_norming;
mas01mc@292 219
mas01mc@327 220 VERB_LOG(1, "INDEX: dim %d\n", (int)dbH->dim);
mas01mc@327 221 VERB_LOG(1, "INDEX: R %f\n", radius);
mas01mc@327 222 VERB_LOG(1, "INDEX: seqlen %d\n", sequenceLength);
mas01mc@327 223 VERB_LOG(1, "INDEX: lsh_w %f\n", lsh_param_w);
mas01mc@327 224 VERB_LOG(1, "INDEX: lsh_k %d\n", lsh_param_k);
mas01mc@327 225 VERB_LOG(1, "INDEX: lsh_m %d\n", lsh_param_m);
mas01mc@327 226 VERB_LOG(1, "INDEX: lsh_N %d\n", lsh_param_N);
mas01mc@327 227 VERB_LOG(1, "INDEX: lsh_C %d\n", lsh_param_ncols);
mas01mc@327 228 VERB_LOG(1, "INDEX: lsh_b %d\n", lsh_param_b);
mas01mc@327 229 VERB_LOG(1, "INDEX: normalized? %s\n", normalizedDistance?"true":"false");
mas01mc@292 230
mas01mc@292 231 if((lshfid = open(newIndexName,O_RDONLY))<0){
mas01mc@292 232 printf("INDEX: constructing new LSH index\n");
mas01mc@292 233 printf("INDEX: making index file %s\n", newIndexName);
mas01mc@292 234 fflush(stdout);
mas01mc@292 235 // Construct new LSH index
mas01mc@292 236 lsh = new LSH((float)lsh_param_w, lsh_param_k,
mas01mc@292 237 lsh_param_m,
mas01mc@292 238 (Uns32T)(sequenceLength*dbH->dim),
mas01mc@292 239 lsh_param_N,
mas01mc@292 240 lsh_param_ncols,
mas01mc@292 241 (float)radius);
mas01mc@292 242 assert(lsh);
mas01mc@292 243
mas01mc@292 244 Uns32T endTrack = lsh_param_b;
mas01mc@292 245 if( endTrack > dbH->numFiles)
mas01mc@292 246 endTrack = dbH->numFiles;
mas01mc@292 247 // Insert up to lsh_param_b tracks
mas01mc@324 248 if( ! (dbH->flags & O2_FLAG_LARGE_ADB) ){
mas01mc@324 249 index_initialize(&sNorm, &snPtr, &sPower, &spPtr, &dbVectors);
mas01mc@324 250 }
mas01mc@324 251 index_insert_tracks(0, endTrack, &fvp, &sNorm, &snPtr, &sPower, &spPtr);
mas01mc@292 252 lsh->serialize(newIndexName, lsh_in_core?O2_SERIAL_FILEFORMAT2:O2_SERIAL_FILEFORMAT1);
mas01mc@292 253
mas01mc@292 254 // Clean up
mas01mc@292 255 delete lsh;
mas01mc@308 256 lsh = 0;
mas01mc@292 257 close(lshfid);
mas01mc@292 258 }
mas01mc@292 259
mas01mc@292 260 // Attempt to open LSH file
mas01mc@292 261 if((lshfid = open(newIndexName,O_RDONLY))>0){
mas01mc@292 262 printf("INDEX: merging with existing LSH index\n");
mas01mc@292 263 fflush(stdout);
mas01mc@340 264 char* mergeIndexName = newIndexName;
mas01mc@292 265
mas01mc@292 266 // Get the lsh header info and find how many tracks are inserted already
mas01mc@340 267 lsh = new LSH(mergeIndexName, false); // lshInCore=false to avoid loading hashTables here
mas01mc@292 268 assert(lsh);
mas01mc@324 269 Uns32T maxs = index_to_trackID(lsh->get_maxp(), lsh_n_point_bits)+1;
mas01mc@292 270 delete lsh;
mas01mc@308 271 lsh = 0;
mas01mc@292 272
mas01mc@340 273 // Insert up to lsh_param_b tracks
mas01mc@340 274 if( !sNorm && !(dbH->flags & O2_FLAG_LARGE_ADB) ){
mas01mc@340 275 index_initialize(&sNorm, &snPtr, &sPower, &spPtr, &dbVectors);
mas01mc@340 276 }
mas01mc@292 277 // This allows for updating index after more tracks are inserted into audioDB
mas01mc@292 278 for(Uns32T startTrack = maxs; startTrack < dbH->numFiles; startTrack+=lsh_param_b){
mas01mc@292 279
mas01mc@292 280 Uns32T endTrack = startTrack + lsh_param_b;
mas01mc@292 281 if( endTrack > dbH->numFiles)
mas01mc@292 282 endTrack = dbH->numFiles;
mas01mc@292 283 printf("Indexing track range: %d - %d\n", startTrack, endTrack);
mas01mc@292 284 fflush(stdout);
mas01mc@340 285 lsh = new LSH(mergeIndexName, false); // Initialize empty LSH tables
mas01mc@292 286 assert(lsh);
mas01mc@292 287
mas01mc@292 288 // Insert up to lsh_param_b database tracks
mas01mc@292 289 index_insert_tracks(startTrack, endTrack, &fvp, &sNorm, &snPtr, &sPower, &spPtr);
mas01mc@292 290
mas01mc@340 291 // Serialize to file (merging is performed here)
mas01mc@340 292 lsh->serialize(mergeIndexName, lsh_in_core?O2_SERIAL_FILEFORMAT2:O2_SERIAL_FILEFORMAT1); // Serialize core LSH heap to disk
mas01mc@292 293 delete lsh;
mas01mc@308 294 lsh = 0;
mas01mc@340 295 }
mas01mc@292 296
mas01mc@292 297 close(lshfid);
mas01mc@292 298 printf("INDEX: done constructing LSH index.\n");
mas01mc@292 299 fflush(stdout);
mas01mc@292 300
mas01mc@292 301 }
mas01mc@292 302 else{
mas01mc@292 303 error("Something's wrong with LSH index file");
mas01mc@292 304 exit(1);
mas01mc@292 305 }
mas01mc@292 306
mas01mc@324 307 delete[] newIndexName;
mas01mc@324 308 delete[] sNorm;
mas01mc@324 309 delete[] sPower;
mas01mc@324 310 }
mas01mc@292 311
mas01mc@292 312
mas01cr@405 313 void audioDB::insertPowerData(unsigned numVectors, int powerfd, double *powerdata) {
mas01cr@405 314 if(usingPower){
mas01cr@405 315 int one;
mas01cr@405 316 unsigned int count;
mas01cr@405 317
mas01cr@405 318 count = read(powerfd, &one, sizeof(unsigned int));
mas01cr@405 319 if (count != sizeof(unsigned int)) {
mas01cr@405 320 error("powerfd read failed", "int", "read");
mas01cr@405 321 }
mas01cr@405 322 if (one != 1) {
mas01cr@405 323 error("dimensionality of power file not 1", powerFileName);
mas01cr@405 324 }
mas01cr@405 325
mas01cr@405 326 // FIXME: should check that the powerfile is the right size for
mas01cr@405 327 // this. -- CSR, 2007-10-30
mas01cr@405 328 count = read(powerfd, powerdata, numVectors * sizeof(double));
mas01cr@405 329 if (count != numVectors * sizeof(double)) {
mas01cr@405 330 error("powerfd read failed", "double", "read");
mas01cr@405 331 }
mas01cr@405 332 }
mas01cr@405 333 }
mas01cr@405 334
mas01mc@324 335 // initialize auxillary track data from filesystem
mas01mc@324 336 // pre-conditions:
mas01mc@324 337 // dbH->flags & O2_FLAG_LARGE_ADB
mas01mc@324 338 // feature data allocated and copied (fvp)
mas01mc@324 339 //
mas01mc@324 340 // post-conditions:
mas01mc@324 341 // allocated power data
mas01mc@324 342 // allocated l2norm data
mas01mc@324 343 //
mas01mc@324 344 void audioDB::init_track_aux_data(Uns32T trackID, double* fvp, double** sNormpp,double** snPtrp, double** sPowerp, double** spPtrp){
mas01mc@324 345 if( !(dbH->flags & O2_FLAG_LARGE_ADB) )
mas01mc@324 346 error("error: init_track_large_adb required O2_FLAG_LARGE_ADB");
mas01mc@292 347
mas01mc@324 348 // Allocate and read the power sequence
mas01mc@324 349 if(trackTable[trackID]>=sequenceLength){
mas01mc@324 350
mas01mc@324 351 char* prefixedString = new char[O2_MAXFILESTR];
mas01mc@324 352 char* tmpStr = prefixedString;
mas01mc@324 353 // Open and check dimensions of power file
mas01mc@324 354 strncpy(prefixedString, powerFileNameTable+trackID*O2_FILETABLE_ENTRY_SIZE, O2_MAXFILESTR);
mas01mc@324 355 prefix_name((char ** const)&prefixedString, adb_feature_root);
mas01mc@324 356 if(prefixedString!=tmpStr)
mas01mc@324 357 delete[] tmpStr;
mas01mc@324 358 powerfd = open(prefixedString, O_RDONLY);
mas01mc@324 359 if (powerfd < 0) {
mas01mc@324 360 error("failed to open power file", prefixedString);
mas01mc@324 361 }
mas01mc@324 362 if (fstat(powerfd, &statbuf) < 0) {
mas01mc@324 363 error("fstat error finding size of power file", prefixedString, "fstat");
mas01mc@324 364 }
mas01mc@324 365
mas01mc@324 366 if( (statbuf.st_size - sizeof(int)) / (sizeof(double)) != trackTable[trackID] )
mas01mc@324 367 error("Dimension mismatch: numPowers != numVectors", prefixedString);
mas01mc@324 368
mas01mc@324 369 *sPowerp = new double[trackTable[trackID]]; // Allocate memory for power values
mas01mc@324 370 assert(*sPowerp);
mas01mc@324 371 *spPtrp = *sPowerp;
mas01mc@324 372 insertPowerData(trackTable[trackID], powerfd, *sPowerp);
mas01mc@324 373 if (0 < powerfd) {
mas01mc@324 374 close(powerfd);
mas01mc@324 375 }
mas01mc@324 376
mas01cr@427 377 audiodb_sequence_sum(*sPowerp, trackTable[trackID], sequenceLength);
mas01cr@427 378 audiodb_sequence_average(*sPowerp, trackTable[trackID], sequenceLength);
mas01mc@324 379 powerTable = 0;
mas01mc@324 380
mas01mc@324 381 // Allocate and calculate the l2norm sequence
mas01mc@324 382 *sNormpp = new double[trackTable[trackID]];
mas01mc@324 383 assert(*sNormpp);
mas01mc@324 384 *snPtrp = *sNormpp;
mas01cr@426 385 audiodb_l2norm_buffer(fvp, dbH->dim, trackTable[trackID], *sNormpp);
mas01cr@427 386 audiodb_sequence_sum(*sNormpp, trackTable[trackID], sequenceLength);
mas01cr@427 387 audiodb_sequence_sqrt(*sNormpp, trackTable[trackID], sequenceLength);
mas01mc@324 388 }
mas01mc@292 389 }
mas01mc@292 390
mas01mc@292 391 void audioDB::index_insert_tracks(Uns32T start_track, Uns32T end_track,
mas01mc@292 392 double** fvpp, double** sNormpp,double** snPtrp,
mas01mc@292 393 double** sPowerp, double** spPtrp){
mas01mc@292 394 size_t nfv = 0;
mas01mc@292 395 double* fvp = 0; // Keep pointer for memory allocation and free() for track data
mas01mc@292 396 Uns32T trackID = 0;
mas01mc@292 397
mas01mc@292 398 VERB_LOG(1, "indexing tracks...");
mas01mc@292 399
mas01mc@324 400 int trackfd = dbfid;
mas01mc@292 401 for(trackID = start_track ; trackID < end_track ; trackID++ ){
mas01mc@324 402 if( dbH->flags & O2_FLAG_LARGE_ADB ){
mas01mc@324 403 char* prefixedString = new char[O2_MAXFILESTR];
mas01mc@324 404 char* tmpStr = prefixedString;
mas01mc@324 405 // Open and check dimensions of feature file
mas01mc@324 406 strncpy(prefixedString, featureFileNameTable+trackID*O2_FILETABLE_ENTRY_SIZE, O2_MAXFILESTR);
mas01mc@324 407 prefix_name((char ** const) &prefixedString, adb_feature_root);
mas01mc@324 408 if(prefixedString!=tmpStr)
mas01mc@324 409 delete[] tmpStr;
mas01cr@454 410 initInputFile(prefixedString);
mas01mc@324 411 trackfd = infid;
mas01mc@324 412 }
mas01cr@433 413 if(audiodb_read_data(adb, trackfd, trackID, &fvp, &nfv))
mas01cr@433 414 error("failed to read data");
mas01mc@292 415 *fvpp = fvp; // Protect memory allocation and free() for track data
mas01mc@324 416
mas01mc@324 417 if( dbH->flags & O2_FLAG_LARGE_ADB )
mas01mc@324 418 // Load power and calculate power and l2norm sequence sums
mas01mc@324 419 init_track_aux_data(trackID, fvp, sNormpp, snPtrp, sPowerp, spPtrp);
mas01mc@324 420
mas01mc@292 421 if(!index_insert_track(trackID, fvpp, snPtrp, spPtrp))
mas01mc@292 422 break;
mas01mc@324 423 if ( dbH->flags & O2_FLAG_LARGE_ADB ){
mas01mc@324 424 close(infid);
mas01mc@324 425 delete[] *sNormpp;
mas01mc@324 426 delete[] *sPowerp;
mas01mc@324 427 *sNormpp = *sPowerp = *snPtrp = *snPtrp = 0;
mas01mc@324 428 }
mas01mc@324 429 } // end for(trackID = start_track ; ... )
mas01mc@292 430 std::cout << "finished inserting." << endl;
mas01mc@292 431 }
mas01mc@292 432
mas01mc@292 433 int audioDB::index_insert_track(Uns32T trackID, double** fvpp, double** snpp, double** sppp){
mas01mc@292 434 // Loop over the current input track's vectors
mas01cr@305 435 Uns32T numVecs = 0;
mas01cr@305 436 if (trackTable[trackID] > O2_MAXTRACKLEN) {
mas01cr@305 437 if (O2_MAXTRACKLEN < sequenceLength - 1) {
mas01cr@305 438 numVecs = 0;
mas01cr@305 439 } else {
mas01cr@305 440 numVecs = O2_MAXTRACKLEN - sequenceLength + 1;
mas01cr@305 441 }
mas01cr@305 442 } else {
mas01cr@305 443 if (trackTable[trackID] < sequenceLength - 1) {
mas01cr@305 444 numVecs = 0;
mas01cr@305 445 } else {
mas01cr@305 446 numVecs = trackTable[trackID] - sequenceLength + 1;
mas01cr@305 447 }
mas01cr@305 448 }
mas01mc@292 449
mas01mc@324 450 Uns32T numVecsAboveThreshold = 0, collisionCount = 0;
mas01mc@324 451 if(numVecs){
mas01mc@324 452 vv = index_initialize_shingles(numVecs);
mas01mc@324 453
mas01mc@324 454 for( Uns32T pointID = 0 ; pointID < numVecs; pointID++ )
mas01cr@456 455 audiodb_index_make_shingle(vv, pointID, *fvpp, dbH->dim, sequenceLength);
mas01mc@324 456
mas01mc@324 457 numVecsAboveThreshold = index_norm_shingles(vv, *snpp, *sppp);
mas01mc@324 458 collisionCount = index_insert_shingles(vv, trackID, *sppp);
mas01mc@324 459 }
mas01mc@292 460 float meanCollisionCount = numVecsAboveThreshold?(float)collisionCount/numVecsAboveThreshold:0;
mas01mc@292 461
mas01mc@292 462 /* index_norm_shingles() only goes as far as the end of the
mas01mc@292 463 sequence, which is right, but the space allocated is for the
mas01mc@292 464 whole track. */
mas01mc@292 465
mas01mc@292 466 /* But numVecs will be <trackTable[track] if trackTable[track]>O2_MAXTRACKLEN
mas01mc@292 467 * So let's be certain the pointers are in the correct place
mas01mc@292 468 */
mas01mc@292 469
mas01mc@324 470 if( !(dbH->flags & O2_FLAG_LARGE_ADB) ){
mas01mc@324 471 *snpp += trackTable[trackID];
mas01mc@324 472 *sppp += trackTable[trackID];
mas01mc@324 473 *fvpp += trackTable[trackID] * dbH->dim;
mas01mc@324 474 }
mas01mc@292 475
mas01mc@292 476 std::cout << " n=" << trackTable[trackID] << " n'=" << numVecsAboveThreshold << " E[#c]=" << lsh->get_mean_collision_rate() << " E[#p]=" << meanCollisionCount << endl;
mas01mc@292 477 std::cout.flush();
mas01mc@292 478 return true;
mas01mc@292 479 }
mas01mc@292 480
mas01mc@292 481 Uns32T audioDB::index_insert_shingles(vector<vector<float> >* vv, Uns32T trackID, double* spp){
mas01mc@292 482 Uns32T collisionCount = 0;
mas01mc@292 483 cout << "[" << trackID << "]" << fileTable+trackID*O2_FILETABLE_ENTRY_SIZE;
mas01mc@324 484 for( Uns32T pointID=0 ; pointID < (*vv).size(); pointID+=sequenceHop){
mas01mc@324 485 if(!use_absolute_threshold || (use_absolute_threshold && (*spp >= absolute_threshold)))
mas01mc@324 486 collisionCount += lsh->insert_point((*vv)[pointID], index_from_trackInfo(trackID, pointID, lsh_n_point_bits));
mas01mc@324 487 spp+=sequenceHop;
mas01mc@311 488 }
mas01mc@292 489 return collisionCount;
mas01mc@292 490 }
mas01mc@292 491
mas01mc@292 492 /*********************** LSH retrieval ****************************/
mas01mc@292 493
mas01mc@292 494
mas01mc@292 495 // return true if indexed query performed else return false
mas01mc@292 496 int audioDB::index_init_query(const char* dbName){
mas01mc@292 497
mas01mc@292 498 if(!(index_exists(dbName, radius, sequenceLength)))
mas01mc@292 499 return false;
mas01mc@292 500
mas01mc@292 501 char* indexName = index_get_name(dbName, radius, sequenceLength);
mas01mc@292 502
mas01mc@292 503 // Test to see if file exists
mas01mc@292 504 if((lshfid = open (indexName, O_RDONLY)) < 0){
mas01mc@292 505 delete[] indexName;
mas01mc@292 506 return false;
mas01mc@292 507 }
mas01mc@292 508
mas01mc@308 509 lsh = index_allocate(indexName, false); // Get the header only here
mas01mc@292 510 sequenceLength = lsh->get_lshHeader()->dataDim / dbH->dim; // shingleDim / vectorDim
mas01mc@292 511
mas01mc@311 512 if(lsh!=SERVER_LSH_INDEX_SINGLETON){
mas01mc@308 513 if( fabs(radius - lsh->get_radius())>fabs(O2_DISTANCE_TOLERANCE))
mas01mc@308 514 printf("*** Warning: adb_radius (%f) != lsh_radius (%f) ***\n", radius, lsh->get_radius());
mas01mc@327 515 VERB_LOG(1,"INDEX: dim %d\n", (int)dbH->dim);
mas01mc@327 516 VERB_LOG(1,"INDEX: R %f\n", lsh->get_radius());
mas01mc@327 517 VERB_LOG(1,"INDEX: seqlen %d\n", sequenceLength);
mas01mc@327 518 VERB_LOG(1,"INDEX: w %f\n", lsh->get_lshHeader()->get_binWidth());
mas01mc@327 519 VERB_LOG(1,"INDEX: k %d\n", lsh->get_lshHeader()->get_numFuns());
mas01mc@327 520 VERB_LOG(1,"INDEX: L (m*(m-1))/2 %d\n", lsh->get_lshHeader()->get_numTables());
mas01mc@327 521 VERB_LOG(1,"INDEX: N %d\n", lsh->get_lshHeader()->get_numRows());
mas01mc@327 522 VERB_LOG(1,"INDEX: s %d\n", index_to_trackID(lsh->get_maxp(), lsh_n_point_bits));
mas01mc@327 523 VERB_LOG(1,"INDEX: Opened LSH index file %s\n", indexName);
mas01mc@308 524 }
mas01mc@292 525
mas01mc@292 526 // Check to see if we are loading hash tables into core, and do so if true
mas01mc@292 527 if((lsh->get_lshHeader()->flags&O2_SERIAL_FILEFORMAT2) || lsh_in_core){
mas01mc@308 528 if(SERVER_LSH_INDEX_SINGLETON)
mas01mc@308 529 fprintf(stderr,"INDEX: using persistent hash tables: %s\n", lsh->get_indexName());
mas01mc@308 530 else
mas01mc@327 531 VERB_LOG(1,"INDEX: loading hash tables into core %s\n", (lsh->get_lshHeader()->flags&O2_SERIAL_FILEFORMAT2)?"FORMAT2":"FORMAT1");
mas01mc@308 532 lsh = index_allocate(indexName, true);
mas01mc@292 533 }
mas01mc@292 534
mas01mc@292 535 delete[] indexName;
mas01mc@292 536 return true;
mas01mc@292 537 }
mas01mc@292 538
mas01mc@292 539 // *Static* approximate NN point reporter callback method for lshlib
mas01mc@292 540 void audioDB::index_add_point_approximate(void* instancePtr, Uns32T pointID, Uns32T qpos, float dist){
mas01mc@292 541 assert(instancePtr); // We need an instance for this callback
mas01mc@292 542 audioDB* myself = (audioDB*) instancePtr; // Use explicit cast to recover "this" instance
mas01mc@324 543 Uns32T trackID = index_to_trackID(pointID, myself->lsh_n_point_bits);
mas01mc@324 544 Uns32T spos = index_to_trackPos(pointID, myself->lsh_n_point_bits);
mas01mc@292 545 // Skip identity in query_from_key
mas01cr@424 546 if( !myself->query_from_key || (myself->query_from_key && ( trackID != myself->query_from_key_index )) ) {
mas01cr@424 547 adb_result_t r;
mas01cr@424 548 r.key = myself->fileTable + trackID * O2_FILETABLE_ENTRY_SIZE;
mas01cr@424 549 r.dist = dist;
mas01cr@424 550 r.qpos = qpos;
mas01cr@424 551 r.ipos = spos;
mas01cr@424 552 myself->accumulator->add_point(&r);
mas01cr@424 553 }
mas01mc@292 554 }
mas01mc@292 555
mas01mc@292 556 // *Static* exact NN point reporter callback method for lshlib
mas01mc@292 557 // Maintain a queue of points to pass to query_points() for exact evaluation
mas01mc@292 558 void audioDB::index_add_point_exact(void* instancePtr, Uns32T pointID, Uns32T qpos, float dist){
mas01mc@292 559 assert(instancePtr); // We need an instance for this callback
mas01mc@292 560 audioDB* myself = (audioDB*) instancePtr; // Use explicit cast to recover "this" instance
mas01mc@324 561 Uns32T trackID = index_to_trackID(pointID, myself->lsh_n_point_bits);
mas01mc@324 562 Uns32T spos = index_to_trackPos(pointID, myself->lsh_n_point_bits);
mas01mc@292 563 // Skip identity in query_from_key
mas01mc@292 564 if( !myself->query_from_key || (myself->query_from_key && ( trackID != myself->query_from_key_index )) )
mas01mc@292 565 myself->index_insert_exact_evaluation_queue(trackID, qpos, spos);
mas01mc@292 566 }
mas01mc@292 567
mas01mc@292 568 void audioDB::initialize_exact_evalutation_queue(){
mas01mc@292 569 if(exact_evaluation_queue)
mas01mc@292 570 delete exact_evaluation_queue;
mas01mc@292 571 exact_evaluation_queue = new priority_queue<PointPair, std::vector<PointPair>, std::less<PointPair> >;
mas01mc@292 572 }
mas01mc@292 573
mas01mc@292 574 void audioDB::index_insert_exact_evaluation_queue(Uns32T trackID, Uns32T qpos, Uns32T spos){
mas01mc@292 575 PointPair p(trackID, qpos, spos);
mas01mc@292 576 exact_evaluation_queue->push(p);
mas01mc@292 577 }
mas01mc@292 578
mas01mc@292 579 // return 0: if index does not exist
mas01mc@292 580 // return nqv: if index exists
mas01cr@455 581 int audioDB::index_query_loop(adb_t *adb, adb_query_spec_t *spec) {
mas01mc@292 582
mas01mc@324 583 double *query = 0, *query_data = 0;
mas01cr@437 584 adb_qpointers_internal_t qpointers = {0};
mas01cr@437 585
mas01mc@292 586 void (*add_point_func)(void*,Uns32T,Uns32T,float);
mas01mc@292 587
mas01cr@436 588 sequenceLength = spec->qid.sequence_length;
mas01cr@435 589 normalizedDistance = (spec->params.distance == ADB_DISTANCE_EUCLIDEAN_NORMED);
mas01cr@431 590
mas01mc@292 591 // Set the point-reporter callback based on the value of lsh_exact
mas01mc@292 592 if(lsh_exact){
mas01mc@292 593 initialize_exact_evalutation_queue();
mas01mc@292 594 add_point_func = &index_add_point_exact;
mas01mc@292 595 }
mas01mc@292 596 else
mas01mc@292 597 add_point_func = &index_add_point_approximate;
mas01mc@292 598
mas01cr@455 599 if(!index_init_query(adb->path)) // sets-up LSH index structures for querying
mas01mc@292 600 return 0;
mas01mc@292 601
mas01cr@455 602 char* database = index_get_name(adb->path, radius, sequenceLength);
mas01mc@292 603
mas01cr@444 604 if(audiodb_query_spec_qpointers(adb, spec, &query_data, &query, &qpointers)) {
mas01cr@444 605 error("failed to set up qpointers");
mas01cr@444 606 }
mas01mc@292 607
mas01mc@292 608 // query vector index
mas01cr@437 609 Uns32T Nq = (qpointers.nvectors>O2_MAXTRACKLEN?O2_MAXTRACKLEN:qpointers.nvectors) - sequenceLength + 1;
mas01mc@292 610 vv = index_initialize_shingles(Nq); // allocate memory to copy query vectors to shingles
mas01cr@447 611
mas01mc@292 612 // Construct shingles from query features
mas01mc@292 613 for( Uns32T pointID = 0 ; pointID < Nq ; pointID++ )
mas01cr@456 614 audiodb_index_make_shingle(vv, pointID, query, dbH->dim, sequenceLength);
mas01mc@292 615
mas01mc@292 616 // Normalize query vectors
mas01cr@437 617 Uns32T numVecsAboveThreshold = index_norm_shingles( vv, qpointers.l2norm, qpointers.power );
mas01mc@292 618
mas01mc@292 619 // Nq contains number of inspected points in query file,
mas01mc@292 620 // numVecsAboveThreshold is number of points with power >= absolute_threshold
mas01cr@437 621 double* qpp = qpointers.power; // Keep original qpPtr for possible exact evaluation
mas01mc@292 622 if(usingQueryPoint && numVecsAboveThreshold){
mas01mc@292 623 if((lsh->get_lshHeader()->flags&O2_SERIAL_FILEFORMAT2) || lsh_in_core)
mas01mc@292 624 lsh->retrieve_point((*vv)[0], queryPoint, add_point_func, (void*)this);
mas01mc@292 625 else
mas01mc@292 626 lsh->serial_retrieve_point(database, (*vv)[0], queryPoint, add_point_func, (void*)this);
mas01mc@292 627 }
mas01mc@292 628 else if(numVecsAboveThreshold)
mas01mc@292 629 for( Uns32T pointID = 0 ; pointID < Nq; pointID++ )
mas01cr@370 630 if(!use_absolute_threshold || (use_absolute_threshold && (*qpp++ >= absolute_threshold))) {
mas01cr@370 631 if((lsh->get_lshHeader()->flags&O2_SERIAL_FILEFORMAT2) || lsh_in_core) {
mas01mc@292 632 lsh->retrieve_point((*vv)[pointID], pointID, add_point_func, (void*)this);
mas01cr@370 633 } else {
mas01mc@292 634 lsh->serial_retrieve_point(database, (*vv)[pointID], pointID, add_point_func, (void*)this);
mas01cr@370 635 }
mas01cr@370 636 }
mas01mc@292 637
mas01mc@292 638 if(lsh_exact)
mas01mc@292 639 // Perform exact distance computation on point pairs in exact_evaluation_queue
mas01cr@455 640 query_loop_points(adb, spec, query, &qpointers);
mas01mc@292 641
mas01mc@292 642 // Close the index file
mas01mc@292 643 close(lshfid);
mas01mc@292 644
mas01mc@292 645 // Clean up
mas01mc@292 646 if(query_data)
mas01mc@292 647 delete[] query_data;
mas01cr@437 648 if(qpointers.l2norm_data)
mas01cr@437 649 delete[] qpointers.l2norm_data;
mas01cr@437 650 if(qpointers.power_data)
mas01cr@437 651 delete[] qpointers.power_data;
mas01cr@437 652 if(qpointers.mean_duration)
mas01cr@437 653 delete[] qpointers.mean_duration;
mas01mc@292 654 if(database)
mas01mc@292 655 delete[] database;
mas01mc@292 656
mas01mc@292 657 return Nq;
mas01mc@292 658 }
mas01mc@292 659