annotate scripts/score_parser.py @ 1490:af5eaa5d66f2

Paper: title and meeting notes
author Brecht De Man <b.deman@qmul.ac.uk>
date Mon, 12 Oct 2015 11:03:57 +0100
parents 0b095f66de65
children 397f19747594 1b6fa37d46a4 235594325b84
rev   line source
djmoffat@718 1 #!/usr/bin/python
djmoffat@718 2
djmoffat@718 3 import xml.etree.ElementTree as ET
djmoffat@718 4 import os
djmoffat@718 5 import sys
djmoffat@718 6 import csv
djmoffat@718 7
djmoffat@718 8 # COMMAND LINE ARGUMENTS
djmoffat@718 9
djmoffat@718 10 assert len(sys.argv)<3, "score_parser takes at most 1 command line argument\n"+\
djmoffat@718 11 "Use: python score_parser.py [rating_folder_location]"
djmoffat@718 12
djmoffat@718 13 # XML results files location
djmoffat@718 14 if len(sys.argv) == 1:
djmoffat@718 15 folder_name = "../saves" # Looks in 'saves/' folder from 'scripts/' folder
djmoffat@718 16 print "Use: python score_parser.py [rating_folder_location]"
djmoffat@718 17 print "Using default path: " + folder_name
djmoffat@718 18 elif len(sys.argv) == 2:
djmoffat@718 19 folder_name = sys.argv[1] # First command line argument is folder
djmoffat@718 20
djmoffat@718 21 # check if folder_name exists
djmoffat@718 22 if not os.path.exists(folder_name):
djmoffat@718 23 #the file is not there
djmoffat@718 24 print "Folder '"+folder_name+"' does not exist."
djmoffat@718 25 sys.exit() # terminate script execution
djmoffat@718 26 elif not os.access(os.path.dirname(folder_name), os.W_OK):
djmoffat@718 27 #the file does exist but write privileges are not given
djmoffat@718 28 print "No write privileges in folder '"+folder_name+"'."
djmoffat@718 29
djmoffat@718 30
djmoffat@718 31 # CODE
djmoffat@718 32
djmoffat@718 33 # remember which files have been opened this time
djmoffat@718 34 file_history = []
djmoffat@718 35
djmoffat@718 36 # get every XML file in folder
djmoffat@718 37 for file in os.listdir(folder_name):
djmoffat@718 38 if file.endswith(".xml"):
djmoffat@718 39 tree = ET.parse(folder_name + '/' + file)
djmoffat@718 40 root = tree.getroot()
djmoffat@718 41
djmoffat@718 42 # get subject ID from XML file
djmoffat@718 43 subject_id = file[:-4] # file name (without extension) as subject ID
djmoffat@718 44
djmoffat@718 45 # get list of all pages this subject evaluated
djmoffat@718 46 for audioholder in root.findall("./audioholder"): # iterate over pages
djmoffat@718 47 page_name = audioholder.get('id') # get page name
djmoffat@718 48
djmoffat@718 49 if page_name is None: # ignore 'empty' audio_holders
djmoffat@718 50 print "WARNING: " + file + " contains empty audio holder. (score_parser.py)"
djmoffat@718 51 break
djmoffat@718 52
djmoffat@718 53 file_name = folder_name+'/ratings/'+page_name+'-ratings.csv' # score file name
djmoffat@718 54
djmoffat@718 55 # create folder 'ratings' if not yet created
djmoffat@718 56 if not os.path.exists(folder_name + '/ratings'):
djmoffat@718 57 os.makedirs(folder_name + '/ratings')
djmoffat@718 58
djmoffat@718 59 # header: fragment IDs in 'alphabetical' order
djmoffat@718 60 # go to fragment column, or create new column if it doesn't exist yet
djmoffat@718 61
djmoffat@718 62 # get array of audio elements and number of audio elements
djmoffat@718 63 audiolist = audioholder.findall("./audioelement")
djmoffat@718 64 n_fragments = len(audiolist)
djmoffat@718 65
djmoffat@718 66 # get alphabetical array of fragment IDs from this subject's XML
djmoffat@718 67 fragmentnamelist = [] # make empty list
djmoffat@718 68 for audioelement in audiolist: # iterate over all audioelements
djmoffat@718 69 fragmentnamelist.append(audioelement.get('id')) # add to list
djmoffat@718 70
djmoffat@718 71 # if file exists, get header and add 'new' fragments
djmoffat@718 72 if os.path.isfile(file_name):
djmoffat@718 73 with open(file_name, 'r') as readfile:
djmoffat@718 74 filereader = csv.reader(readfile, delimiter=',')
djmoffat@718 75 headerrow = filereader.next()
djmoffat@718 76
djmoffat@718 77 # If file hasn't been opened yet this time, remove all rows except header
djmoffat@718 78 if file_name not in file_history:
djmoffat@718 79 with open(file_name, 'w') as writefile:
djmoffat@718 80 filewriter = csv.writer(writefile, delimiter=',')
djmoffat@718 81 headerrow = sorted(headerrow)
djmoffat@718 82 filewriter.writerow(headerrow)
djmoffat@718 83 file_history.append(file_name)
djmoffat@718 84
djmoffat@718 85 # Which of the fragmentes are in fragmentnamelist but not in headerrow?
djmoffat@718 86 newfragments = list(set(fragmentnamelist)-set(headerrow))
djmoffat@718 87 newfragments = sorted(newfragments) # new fragments in alphabetical order
djmoffat@718 88 # If not empty, read file and rewrite adding extra columns
djmoffat@718 89 if newfragments: # if not empty
djmoffat@718 90 with open('temp.csv', 'w') as writefile:
djmoffat@718 91 filewriter = csv.writer(writefile, delimiter=',')
djmoffat@718 92 filewriter.writerow(headerrow + newfragments) # write new header
djmoffat@718 93 with open(file_name, 'r') as readfile:
djmoffat@718 94 filereader = csv.reader(readfile, delimiter=',')
djmoffat@718 95 filereader.next() # skip header
djmoffat@718 96 for row in filereader: # rewrite row plus empty cells for every new fragment name
djmoffat@718 97 filewriter.writerow(row + ['']*len(newfragments))
djmoffat@718 98 os.rename('temp.csv', file_name) # replace old file with temp file
djmoffat@718 99 headerrow = headerrow + newfragments
djmoffat@718 100
djmoffat@718 101 # if not, create file and make header
djmoffat@718 102 else:
djmoffat@718 103 headerrow = sorted(fragmentnamelist) # sort alphabetically
djmoffat@718 104 headerrow.insert(0,'')
djmoffat@718 105 fragmentnamelist = fragmentnamelist[1:] #HACKY FIX inserting in firstrow also affects fragmentnamelist
djmoffat@718 106 with open(file_name, 'w') as writefile:
djmoffat@718 107 filewriter = csv.writer(writefile, delimiter=',')
djmoffat@718 108 filewriter.writerow(headerrow)
djmoffat@718 109
djmoffat@718 110 # open file to write for this page
djmoffat@718 111 writefile = open(file_name, 'a')
djmoffat@718 112 filewriter = csv.writer(writefile, delimiter=',')
djmoffat@718 113
djmoffat@718 114 # prepare row to be written for this subject for this page
djmoffat@718 115 ratingrow = [subject_id]
djmoffat@718 116
djmoffat@718 117 # get scores related to fragment [id]
djmoffat@718 118 for fragmentname in headerrow[1:]: # iterate over fragments in header (skip first empty column)
djmoffat@718 119 elementvalue = audioholder.find("./audioelement/[@id='"
djmoffat@718 120 + fragmentname
djmoffat@718 121 + "']/value")
djmoffat@718 122 if hasattr(elementvalue, 'text'): # if rating for this fragment exists
djmoffat@718 123 ratingrow.append(elementvalue.text) # add to rating row
djmoffat@718 124 else: # if this subject has not rated this fragment
djmoffat@718 125 ratingrow.append('') # append empty cell
djmoffat@718 126
djmoffat@718 127 # write row: [subject ID, rating fragment ID 1, ..., rating fragment ID M]
djmoffat@718 128 if any(ratingrow[1:]): # append to file if row non-empty (except subject name)
djmoffat@718 129 filewriter.writerow(ratingrow)