annotate scripts/score_parser.py @ 2202:61c8e13f1e2e

Merge branch 'master' of https://github.com/BrechtDeMan/WebAudioEvaluationTool
author www-data <www-data@sucuk.dcs.qmul.ac.uk>
date Fri, 08 Apr 2016 13:20:54 +0100
parents a44af5ba444c
children
rev   line source
BrechtDeMan@884 1 #!/usr/bin/python
BrechtDeMan@884 2
BrechtDeMan@928 3 import xml.etree.ElementTree as ET
BrechtDeMan@928 4 import os
BrechtDeMan@1063 5 import sys
BrechtDeMan@928 6 import csv
BrechtDeMan@928 7
BrechtDeMan@1063 8 # COMMAND LINE ARGUMENTS
BrechtDeMan@1063 9
BrechtDeMan@1063 10 assert len(sys.argv)<3, "score_parser takes at most 1 command line argument\n"+\
BrechtDeMan@1063 11 "Use: python score_parser.py [rating_folder_location]"
BrechtDeMan@1063 12
BrechtDeMan@1063 13 # XML results files location
BrechtDeMan@1063 14 if len(sys.argv) == 1:
BrechtDeMan@1063 15 folder_name = "../saves" # Looks in 'saves/' folder from 'scripts/' folder
BrechtDeMan@1063 16 print "Use: python score_parser.py [rating_folder_location]"
BrechtDeMan@1063 17 print "Using default path: " + folder_name
BrechtDeMan@1063 18 elif len(sys.argv) == 2:
BrechtDeMan@1063 19 folder_name = sys.argv[1] # First command line argument is folder
BrechtDeMan@883 20
BrechtDeMan@1066 21 # check if folder_name exists
BrechtDeMan@1066 22 if not os.path.exists(folder_name):
BrechtDeMan@1066 23 #the file is not there
BrechtDeMan@1066 24 print "Folder '"+folder_name+"' does not exist."
BrechtDeMan@1066 25 sys.exit() # terminate script execution
BrechtDeMan@1066 26 elif not os.access(os.path.dirname(folder_name), os.W_OK):
BrechtDeMan@1066 27 #the file does exist but write privileges are not given
BrechtDeMan@1066 28 print "No write privileges in folder '"+folder_name+"'."
BrechtDeMan@1066 29
BrechtDeMan@1066 30
BrechtDeMan@1066 31 # CODE
BrechtDeMan@1066 32
BrechtDeMan@1072 33 # remember which files have been opened this time
BrechtDeMan@1072 34 file_history = []
BrechtDeMan@1072 35
BrechtDeMan@928 36 # get every XML file in folder
BrechtDeMan@1187 37 for file_name in os.listdir(folder_name):
BrechtDeMan@1187 38 if file_name.endswith(".xml"):
BrechtDeMan@1187 39 tree = ET.parse(folder_name + '/' + file_name)
BrechtDeMan@928 40 root = tree.getroot()
BrechtDeMan@928 41
BrechtDeMan@928 42 # get subject ID from XML file
BrechtDeMan@1187 43 subject_id = file_name[:-4] # file name (without extension) as subject ID
BrechtDeMan@928 44
BrechtDeMan@928 45 # get list of all pages this subject evaluated
n@1252 46 for page in root.findall("./page"): # iterate over pages
n@1252 47 page_name = page.get('ref') # get page reference ID
BrechtDeMan@884 48
BrechtDeMan@1030 49 if page_name is None: # ignore 'empty' audio_holders
BrechtDeMan@1187 50 print "WARNING: " + file_name + " contains empty audio holder. (score_parser.py)"
BrechtDeMan@1030 51 break
n@1252 52
n@1252 53 if page.get('state') != "complete":
n@1252 54 print "WARNING:" + file_name + " contains incomplete page " +page_name+ ". (score_parser.py)"
n@1252 55 break;
BrechtDeMan@928 56
BrechtDeMan@883 57 file_name = folder_name+'/ratings/'+page_name+'-ratings.csv' # score file name
BrechtDeMan@928 58
BrechtDeMan@1072 59 # create folder 'ratings' if not yet created
BrechtDeMan@883 60 if not os.path.exists(folder_name + '/ratings'):
BrechtDeMan@883 61 os.makedirs(folder_name + '/ratings')
BrechtDeMan@928 62
BrechtDeMan@928 63 # header: fragment IDs in 'alphabetical' order
BrechtDeMan@928 64 # go to fragment column, or create new column if it doesn't exist yet
BrechtDeMan@928 65
BrechtDeMan@928 66 # get array of audio elements and number of audio elements
n@1252 67 audiolist = page.findall("./audioelement")
BrechtDeMan@928 68 n_fragments = len(audiolist)
BrechtDeMan@928 69
BrechtDeMan@928 70 # get alphabetical array of fragment IDs from this subject's XML
BrechtDeMan@928 71 fragmentnamelist = [] # make empty list
BrechtDeMan@928 72 for audioelement in audiolist: # iterate over all audioelements
n@1252 73 fragmentnamelist.append(audioelement.get('ref')) # add to list
BrechtDeMan@928 74
BrechtDeMan@1187 75
BrechtDeMan@1187 76 # if file exists, get header and add any 'new' fragments not yet in the header
BrechtDeMan@928 77 if os.path.isfile(file_name):
BrechtDeMan@928 78 with open(file_name, 'r') as readfile:
BrechtDeMan@928 79 filereader = csv.reader(readfile, delimiter=',')
BrechtDeMan@928 80 headerrow = filereader.next()
BrechtDeMan@928 81
BrechtDeMan@1072 82 # If file hasn't been opened yet this time, remove all rows except header
BrechtDeMan@1072 83 if file_name not in file_history:
BrechtDeMan@1072 84 with open(file_name, 'w') as writefile:
BrechtDeMan@1072 85 filewriter = csv.writer(writefile, delimiter=',')
BrechtDeMan@1072 86 headerrow = sorted(headerrow)
BrechtDeMan@1072 87 filewriter.writerow(headerrow)
BrechtDeMan@1072 88 file_history.append(file_name)
BrechtDeMan@1072 89
BrechtDeMan@1187 90 # Which of the fragments are in fragmentnamelist but not in headerrow?
BrechtDeMan@884 91 newfragments = list(set(fragmentnamelist)-set(headerrow))
BrechtDeMan@884 92 newfragments = sorted(newfragments) # new fragments in alphabetical order
BrechtDeMan@884 93 # If not empty, read file and rewrite adding extra columns
BrechtDeMan@884 94 if newfragments: # if not empty
BrechtDeMan@884 95 with open('temp.csv', 'w') as writefile:
BrechtDeMan@884 96 filewriter = csv.writer(writefile, delimiter=',')
BrechtDeMan@884 97 filewriter.writerow(headerrow + newfragments) # write new header
BrechtDeMan@884 98 with open(file_name, 'r') as readfile:
BrechtDeMan@884 99 filereader = csv.reader(readfile, delimiter=',')
BrechtDeMan@884 100 filereader.next() # skip header
BrechtDeMan@928 101 for row in filereader: # rewrite row plus empty cells for every new fragment name
BrechtDeMan@928 102 filewriter.writerow(row + ['']*len(newfragments))
BrechtDeMan@884 103 os.rename('temp.csv', file_name) # replace old file with temp file
BrechtDeMan@884 104 headerrow = headerrow + newfragments
BrechtDeMan@798 105
BrechtDeMan@1187 106
BrechtDeMan@1187 107 # if file does not exist yet, create file and make header
BrechtDeMan@928 108 else:
BrechtDeMan@928 109 headerrow = sorted(fragmentnamelist) # sort alphabetically
BrechtDeMan@928 110 headerrow.insert(0,'')
BrechtDeMan@928 111 fragmentnamelist = fragmentnamelist[1:] #HACKY FIX inserting in firstrow also affects fragmentnamelist
BrechtDeMan@928 112 with open(file_name, 'w') as writefile:
BrechtDeMan@928 113 filewriter = csv.writer(writefile, delimiter=',')
BrechtDeMan@928 114 filewriter.writerow(headerrow)
BrechtDeMan@1187 115 file_history.append(file_name)
BrechtDeMan@928 116
BrechtDeMan@928 117 # open file to write for this page
BrechtDeMan@928 118 writefile = open(file_name, 'a')
BrechtDeMan@928 119 filewriter = csv.writer(writefile, delimiter=',')
BrechtDeMan@928 120
BrechtDeMan@928 121 # prepare row to be written for this subject for this page
BrechtDeMan@928 122 ratingrow = [subject_id]
BrechtDeMan@928 123
BrechtDeMan@928 124 # get scores related to fragment [id]
BrechtDeMan@928 125 for fragmentname in headerrow[1:]: # iterate over fragments in header (skip first empty column)
n@1252 126 elementvalue = page.find("./audioelement/[@ref='"
BrechtDeMan@928 127 + fragmentname
BrechtDeMan@928 128 + "']/value")
BrechtDeMan@928 129 if hasattr(elementvalue, 'text'): # if rating for this fragment exists
BrechtDeMan@928 130 ratingrow.append(elementvalue.text) # add to rating row
BrechtDeMan@928 131 else: # if this subject has not rated this fragment
BrechtDeMan@928 132 ratingrow.append('') # append empty cell
BrechtDeMan@928 133
BrechtDeMan@928 134 # write row: [subject ID, rating fragment ID 1, ..., rating fragment ID M]
BrechtDeMan@885 135 if any(ratingrow[1:]): # append to file if row non-empty (except subject name)
BrechtDeMan@885 136 filewriter.writerow(ratingrow)