annotate scripts/score_parser.py @ 1150:2674d80c66ff

Confirmed working (using examples) on OSX (Chrome/Safari/Firefox)
author Nicholas Jillings <n.g.r.jillings@se14.qmul.ac.uk>
date Thu, 14 Jan 2016 16:00:52 +0000
parents 3edcbbea168b
children 8540d153caec
rev   line source
n@1118 1 #!/usr/bin/python
n@1118 2
n@1118 3 import xml.etree.ElementTree as ET
n@1118 4 import os
n@1118 5 import sys
n@1118 6 import csv
n@1118 7
n@1118 8 # COMMAND LINE ARGUMENTS
n@1118 9
n@1118 10 assert len(sys.argv)<3, "score_parser takes at most 1 command line argument\n"+\
n@1118 11 "Use: python score_parser.py [rating_folder_location]"
n@1118 12
n@1118 13 # XML results files location
n@1118 14 if len(sys.argv) == 1:
n@1118 15 folder_name = "../saves" # Looks in 'saves/' folder from 'scripts/' folder
n@1118 16 print "Use: python score_parser.py [rating_folder_location]"
n@1118 17 print "Using default path: " + folder_name
n@1118 18 elif len(sys.argv) == 2:
n@1118 19 folder_name = sys.argv[1] # First command line argument is folder
n@1118 20
n@1118 21 # check if folder_name exists
n@1118 22 if not os.path.exists(folder_name):
n@1118 23 #the file is not there
n@1118 24 print "Folder '"+folder_name+"' does not exist."
n@1118 25 sys.exit() # terminate script execution
n@1118 26 elif not os.access(os.path.dirname(folder_name), os.W_OK):
n@1118 27 #the file does exist but write privileges are not given
n@1118 28 print "No write privileges in folder '"+folder_name+"'."
n@1118 29
n@1118 30
n@1118 31 # CODE
n@1118 32
n@1118 33 # remember which files have been opened this time
n@1118 34 file_history = []
n@1118 35
n@1118 36 # get every XML file in folder
n@1118 37 for file in os.listdir(folder_name):
n@1118 38 if file.endswith(".xml"):
n@1118 39 tree = ET.parse(folder_name + '/' + file)
n@1118 40 root = tree.getroot()
n@1118 41
n@1118 42 # get subject ID from XML file
n@1118 43 subject_id = file[:-4] # file name (without extension) as subject ID
n@1118 44
n@1118 45 # get list of all pages this subject evaluated
n@1118 46 for audioholder in root.findall("./audioholder"): # iterate over pages
n@1118 47 page_name = audioholder.get('id') # get page name
n@1118 48
n@1118 49 if page_name is None: # ignore 'empty' audio_holders
n@1118 50 print "WARNING: " + file + " contains empty audio holder. (score_parser.py)"
n@1118 51 break
n@1118 52
n@1118 53 file_name = folder_name+'/ratings/'+page_name+'-ratings.csv' # score file name
n@1118 54
n@1118 55 # create folder 'ratings' if not yet created
n@1118 56 if not os.path.exists(folder_name + '/ratings'):
n@1118 57 os.makedirs(folder_name + '/ratings')
n@1118 58
n@1118 59 # header: fragment IDs in 'alphabetical' order
n@1118 60 # go to fragment column, or create new column if it doesn't exist yet
n@1118 61
n@1118 62 # get array of audio elements and number of audio elements
n@1118 63 audiolist = audioholder.findall("./audioelement")
n@1118 64 n_fragments = len(audiolist)
n@1118 65
n@1118 66 # get alphabetical array of fragment IDs from this subject's XML
n@1118 67 fragmentnamelist = [] # make empty list
n@1118 68 for audioelement in audiolist: # iterate over all audioelements
n@1118 69 fragmentnamelist.append(audioelement.get('id')) # add to list
n@1118 70
n@1118 71 # if file exists, get header and add 'new' fragments
n@1118 72 if os.path.isfile(file_name):
n@1118 73 with open(file_name, 'r') as readfile:
n@1118 74 filereader = csv.reader(readfile, delimiter=',')
n@1118 75 headerrow = filereader.next()
n@1118 76
n@1118 77 # If file hasn't been opened yet this time, remove all rows except header
n@1118 78 if file_name not in file_history:
n@1118 79 with open(file_name, 'w') as writefile:
n@1118 80 filewriter = csv.writer(writefile, delimiter=',')
n@1118 81 headerrow = sorted(headerrow)
n@1118 82 filewriter.writerow(headerrow)
n@1118 83 file_history.append(file_name)
n@1118 84
n@1118 85 # Which of the fragmentes are in fragmentnamelist but not in headerrow?
n@1118 86 newfragments = list(set(fragmentnamelist)-set(headerrow))
n@1118 87 newfragments = sorted(newfragments) # new fragments in alphabetical order
n@1118 88 # If not empty, read file and rewrite adding extra columns
n@1118 89 if newfragments: # if not empty
n@1118 90 with open('temp.csv', 'w') as writefile:
n@1118 91 filewriter = csv.writer(writefile, delimiter=',')
n@1118 92 filewriter.writerow(headerrow + newfragments) # write new header
n@1118 93 with open(file_name, 'r') as readfile:
n@1118 94 filereader = csv.reader(readfile, delimiter=',')
n@1118 95 filereader.next() # skip header
n@1118 96 for row in filereader: # rewrite row plus empty cells for every new fragment name
n@1118 97 filewriter.writerow(row + ['']*len(newfragments))
n@1118 98 os.rename('temp.csv', file_name) # replace old file with temp file
n@1118 99 headerrow = headerrow + newfragments
n@1118 100
n@1118 101 # if not, create file and make header
n@1118 102 else:
n@1118 103 headerrow = sorted(fragmentnamelist) # sort alphabetically
n@1118 104 headerrow.insert(0,'')
n@1118 105 fragmentnamelist = fragmentnamelist[1:] #HACKY FIX inserting in firstrow also affects fragmentnamelist
n@1118 106 with open(file_name, 'w') as writefile:
n@1118 107 filewriter = csv.writer(writefile, delimiter=',')
n@1118 108 filewriter.writerow(headerrow)
n@1118 109
n@1118 110 # open file to write for this page
n@1118 111 writefile = open(file_name, 'a')
n@1118 112 filewriter = csv.writer(writefile, delimiter=',')
n@1118 113
n@1118 114 # prepare row to be written for this subject for this page
n@1118 115 ratingrow = [subject_id]
n@1118 116
n@1118 117 # get scores related to fragment [id]
n@1118 118 for fragmentname in headerrow[1:]: # iterate over fragments in header (skip first empty column)
n@1118 119 elementvalue = audioholder.find("./audioelement/[@id='"
n@1118 120 + fragmentname
n@1118 121 + "']/value")
n@1118 122 if hasattr(elementvalue, 'text'): # if rating for this fragment exists
n@1118 123 ratingrow.append(elementvalue.text) # add to rating row
n@1118 124 else: # if this subject has not rated this fragment
n@1118 125 ratingrow.append('') # append empty cell
n@1118 126
n@1118 127 # write row: [subject ID, rating fragment ID 1, ..., rating fragment ID M]
n@1118 128 if any(ratingrow[1:]): # append to file if row non-empty (except subject name)
n@1118 129 filewriter.writerow(ratingrow)