annotate new/python/timeline_view_movement.py @ 22:1f375b7d75fd tip

updated warning for breaks during test
author Giulio Moro <giuliomoro@yahoo.it>
date Fri, 13 May 2016 19:01:08 +0100
parents 853caf8cd74b
children
rev   line source
giuliomoro@15 1 #!/usr/bin/python
giuliomoro@15 2
giuliomoro@15 3 import xml.etree.ElementTree as ET
giuliomoro@15 4 import os # list files in directory
giuliomoro@15 5 import sys # command line arguments
giuliomoro@15 6 import matplotlib.pyplot as plt # plots
giuliomoro@15 7 import matplotlib.patches as patches # rectangles
giuliomoro@15 8
giuliomoro@15 9
giuliomoro@15 10 # COMMAND LINE ARGUMENTS
giuliomoro@15 11
giuliomoro@15 12 assert len(sys.argv)<3, "timeline_view_movement takes at most 1 command line argument\n"+\
giuliomoro@15 13 "Use: python timeline_view_movement.py [XML_files_location]"
giuliomoro@15 14
giuliomoro@15 15 # XML results files location
giuliomoro@15 16 if len(sys.argv) == 1:
giuliomoro@15 17 folder_name = "../saves" # Looks in 'saves/' folder from 'scripts/' folder
giuliomoro@15 18 print("Use: python timeline_view_movement.py [XML_files_location]")
giuliomoro@15 19 print("Using default path: " + folder_name)
giuliomoro@15 20 elif len(sys.argv) == 2:
giuliomoro@15 21 folder_name = sys.argv[1] # First command line argument is folder
giuliomoro@15 22
giuliomoro@15 23 # check if folder_name exists
giuliomoro@15 24 if not os.path.exists(folder_name):
giuliomoro@15 25 #the file is not there
giuliomoro@15 26 print("Folder '"+folder_name+"' does not exist.")
giuliomoro@15 27 sys.exit() # terminate script execution
giuliomoro@15 28 elif not os.access(os.path.dirname(folder_name), os.W_OK):
giuliomoro@15 29 #the file does exist but write privileges are not given
giuliomoro@15 30 print("No write privileges in folder '"+folder_name+"'.")
giuliomoro@15 31
giuliomoro@15 32
giuliomoro@15 33 # CONFIGURATION
giuliomoro@15 34
giuliomoro@15 35 # Folder where to store timelines
giuliomoro@15 36 timeline_folder = folder_name + '/timelines_movement/' # Stores in 'saves/timelines_movement/' by default
giuliomoro@15 37
giuliomoro@15 38 # Font settings
giuliomoro@15 39 font = {'weight' : 'bold',
giuliomoro@15 40 'size' : 16}
giuliomoro@15 41 plt.rc('font', **font)
giuliomoro@15 42
giuliomoro@15 43 # Colormap for to cycle through
giuliomoro@15 44 colormap = ['b', 'g', 'c', 'm', 'y', 'k']
giuliomoro@15 45
giuliomoro@15 46 # figure size
giuliomoro@15 47 fig_width = 25
giuliomoro@15 48 fig_height = 10
giuliomoro@15 49
giuliomoro@15 50
giuliomoro@15 51 # CODE
giuliomoro@15 52
giuliomoro@15 53 # create timeline_folder if not yet created
giuliomoro@15 54 if not os.path.exists(timeline_folder):
giuliomoro@15 55 os.makedirs(timeline_folder)
giuliomoro@15 56
giuliomoro@15 57 # get every XML file in folder
giuliomoro@15 58 for file in os.listdir(folder_name):
giuliomoro@15 59 if file.endswith(".xml"):
giuliomoro@15 60 tree = ET.parse(folder_name + '/' + file)
giuliomoro@15 61 root = tree.getroot()
giuliomoro@15 62 subject_id = file[:-4] # drop '.xml'
giuliomoro@15 63
giuliomoro@15 64 previous_page_time = 0 # time spent before current page
giuliomoro@15 65 time_offset = 0 # test starts at zero
giuliomoro@15 66
giuliomoro@15 67 # ONE TIMELINE PER PAGE - make new plot per page
giuliomoro@15 68
giuliomoro@15 69 # get list of all page names
giuliomoro@15 70 for page in root.findall("./page"): # iterate over pages
giuliomoro@15 71 page_name = page.get('ref') # get page name
giuliomoro@15 72 plot_empty = True # check if any data is plotted
giuliomoro@15 73
giuliomoro@15 74 if page_name is None: # ignore 'empty' audio_holders
giuliomoro@15 75 print("Skipping empty page name from "+subject_id+".")
giuliomoro@15 76 break
giuliomoro@15 77
giuliomoro@15 78 # subtract total page length from subsequent page event times
giuliomoro@15 79 page_time_temp = page.find("./metric/metricresult/[@id='testTime']")
giuliomoro@15 80 if page_time_temp is not None:
giuliomoro@15 81 page_time = float(page_time_temp.text)
giuliomoro@15 82 else:
giuliomoro@15 83 print("Skipping page without total time specified from "+subject_id+".")
giuliomoro@15 84 break
giuliomoro@15 85
giuliomoro@15 86 # get audioelements
giuliomoro@15 87 audioelements = page.findall("./audioelement")
giuliomoro@15 88
giuliomoro@15 89 # sort alphabetically
giuliomoro@15 90 data = []
giuliomoro@15 91 for elem in audioelements: # from http://effbot.org/zone/element-sort.htm
giuliomoro@15 92 key = elem.get("ref")
giuliomoro@15 93 data.append((key, elem))
giuliomoro@15 94 data.sort()
giuliomoro@15 95
giuliomoro@15 96 N_audioelements = len(audioelements) # number of audio elements for this page
giuliomoro@15 97 increment = 0 # increased for every new audioelement
giuliomoro@15 98
giuliomoro@15 99 # get axes handle
giuliomoro@15 100 fig = plt.figure(figsize=(fig_width, fig_height))
giuliomoro@15 101 ax = fig.add_subplot(111)
giuliomoro@15 102
giuliomoro@15 103 # for page [page_name], print comments related to fragment [id]
giuliomoro@15 104 #for tuple in data:
giuliomoro@15 105 # audioelement = tuple[1]
giuliomoro@15 106 for tuple in data:
giuliomoro@15 107 audioelement = tuple[1]
giuliomoro@15 108 if audioelement is not None: # Check it exists
giuliomoro@15 109 audio_id = str(audioelement.get('ref'))
giuliomoro@15 110
giuliomoro@15 111 # break if no initial position or move events registered
giuliomoro@15 112 initial_position_temp = audioelement.find("./metric/metricresult/[@name='elementInitialPosition']")
giuliomoro@15 113 if initial_position_temp is None:
giuliomoro@15 114 print("Skipping "+page_name+" from "+subject_id+": does not have initial positions specified.")
giuliomoro@15 115 break
giuliomoro@15 116
giuliomoro@15 117 # get move events, initial and eventual position
giuliomoro@15 118 initial_position = float(initial_position_temp.text)
giuliomoro@15 119 move_events = audioelement.findall("./metric/metricresult/[@name='elementTrackerFull']/movement")
giuliomoro@15 120 final_position = float(audioelement.find("./value").text)
giuliomoro@15 121
giuliomoro@15 122 # get listen events
giuliomoro@15 123 start_times_global = []
giuliomoro@15 124 stop_times_global = []
giuliomoro@15 125 listen_events = audioelement.findall("./metric/metricresult/[@name='elementListenTracker']/event")
giuliomoro@15 126 for event in listen_events:
giuliomoro@15 127 # get testtime: start and stop
giuliomoro@15 128 start_times_global.append(float(event.find('testtime').get('start'))-time_offset)
giuliomoro@15 129 stop_times_global.append(float(event.find('testtime').get('stop'))-time_offset)
giuliomoro@15 130
giuliomoro@15 131 # display fragment name at start
giuliomoro@15 132 plt.text(0,initial_position+0.02,audio_id,color=colormap[increment%len(colormap)]) #,rotation=45
giuliomoro@15 133
giuliomoro@15 134 # previous position and time
giuliomoro@15 135 previous_position = initial_position
giuliomoro@15 136 previous_time = 0
giuliomoro@15 137
giuliomoro@15 138 # assume not playing at start
giuliomoro@15 139 currently_playing = False # keep track of whether fragment is playing during move event
giuliomoro@15 140
giuliomoro@15 141 # draw all segments except final one
giuliomoro@15 142 for event in move_events:
giuliomoro@15 143 # mark this plot as not empty
giuliomoro@15 144 plot_empty = False
giuliomoro@15 145
giuliomoro@15 146 # get time and final position of move event
giuliomoro@15 147 new_time = float(event.get("time")) #-time_offset # (legacy)
giuliomoro@15 148 new_position = float(event.get("value"))
giuliomoro@15 149
giuliomoro@15 150 # get play/stop events since last move until current move event
giuliomoro@15 151 stop_times = []
giuliomoro@15 152 start_times = []
giuliomoro@15 153 # is there a play and/or stop event between previous_time and new_time?
giuliomoro@15 154 for time in start_times_global:
giuliomoro@15 155 if time>previous_time and time<new_time:
giuliomoro@15 156 start_times.append(time)
giuliomoro@15 157 for time in stop_times_global:
giuliomoro@15 158 if time>previous_time and time<new_time:
giuliomoro@15 159 stop_times.append(time)
giuliomoro@15 160 # if no play/stop events between move events, find out whether playing
giuliomoro@15 161
giuliomoro@15 162 segment_start = previous_time # first segment starts at previous move event
giuliomoro@15 163
giuliomoro@15 164 # draw segments (horizontal line)
giuliomoro@15 165 while len(start_times)+len(stop_times)>0: # while still play/stop events left
giuliomoro@15 166 if len(stop_times)<1: # upcoming event is 'play'
giuliomoro@15 167 # draw non-playing segment from segment_start to 'play'
giuliomoro@15 168 currently_playing = False
giuliomoro@15 169 segment_stop = start_times.pop(0) # remove and return first item
giuliomoro@15 170 elif len(start_times)<1: # upcoming event is 'stop'
giuliomoro@15 171 # draw playing segment (red) from segment_start to 'stop'
giuliomoro@15 172 currently_playing = True
giuliomoro@15 173 segment_stop = stop_times.pop(0) # remove and return first item
giuliomoro@15 174 elif start_times[0]<stop_times[0]: # upcoming event is 'play'
giuliomoro@15 175 # draw non-playing segment from segment_start to 'play'
giuliomoro@15 176 currently_playing = False
giuliomoro@15 177 segment_stop = start_times.pop(0) # remove and return first item
giuliomoro@15 178 else: # stop_times[0]<start_times[0]: upcoming event is 'stop'
giuliomoro@15 179 # draw playing segment (red) from segment_start to 'stop'
giuliomoro@15 180 currently_playing = True
giuliomoro@15 181 segment_stop = stop_times.pop(0) # remove and return first item
giuliomoro@15 182
giuliomoro@15 183 # draw segment
giuliomoro@15 184 plt.plot([segment_start, segment_stop], # x-values
giuliomoro@15 185 [previous_position, previous_position], # y-values
giuliomoro@15 186 color='r' if currently_playing else colormap[increment%len(colormap)],
giuliomoro@15 187 linewidth=3
giuliomoro@15 188 )
giuliomoro@15 189 segment_start = segment_stop # move on to next segment
giuliomoro@15 190 currently_playing = not currently_playing # toggle to draw final segment correctly
giuliomoro@15 191
giuliomoro@15 192 # draw final segment (horizontal line) from last 'segment_start' to current move event time
giuliomoro@15 193 plt.plot([segment_start, new_time], # x-values
giuliomoro@15 194 [previous_position, previous_position], # y-values
giuliomoro@15 195 # color depends on playing during move event or not:
giuliomoro@15 196 color='r' if currently_playing else colormap[increment%len(colormap)],
giuliomoro@15 197 linewidth=3
giuliomoro@15 198 )
giuliomoro@15 199
giuliomoro@15 200 # vertical line from previous to current position
giuliomoro@15 201 plt.plot([new_time, new_time], # x-values
giuliomoro@15 202 [previous_position, new_position], # y-values
giuliomoro@15 203 # color depends on playing during move event or not:
giuliomoro@15 204 color='r' if currently_playing else colormap[increment%len(colormap)],
giuliomoro@15 205 linewidth=3
giuliomoro@15 206 )
giuliomoro@15 207
giuliomoro@15 208 # update previous_position value
giuliomoro@15 209 previous_position = new_position
giuliomoro@15 210 previous_time = new_time
giuliomoro@15 211
giuliomoro@15 212
giuliomoro@15 213
giuliomoro@15 214 # draw final horizontal segment (or only segment if audioelement not moved)
giuliomoro@15 215 # horizontal line from previous time to end of page
giuliomoro@15 216
giuliomoro@15 217 # get play/stop events since last move until current move event
giuliomoro@15 218 stop_times = []
giuliomoro@15 219 start_times = []
giuliomoro@15 220 # is there a play and/or stop event between previous_time and new_time?
giuliomoro@15 221 for time in start_times_global:
giuliomoro@15 222 if time>previous_time and time<page_time: #-time_offset:
giuliomoro@15 223 start_times.append(time)
giuliomoro@15 224 for time in stop_times_global:
giuliomoro@15 225 if time>previous_time and time<page_time: #-time_offset:
giuliomoro@15 226 stop_times.append(time)
giuliomoro@15 227 # if no play/stop events between move events, find out whether playing
giuliomoro@15 228
giuliomoro@15 229 segment_start = previous_time # first segment starts at previous move event
giuliomoro@15 230
giuliomoro@15 231 # draw segments (horizontal line)
giuliomoro@15 232 while len(start_times)+len(stop_times)>0: # while still play/stop events left
giuliomoro@15 233 # mark this plot as not empty
giuliomoro@15 234 plot_empty = False
giuliomoro@15 235 if len(stop_times)<1: # upcoming event is 'play'
giuliomoro@15 236 # draw non-playing segment from segment_start to 'play'
giuliomoro@15 237 currently_playing = False
giuliomoro@15 238 segment_stop = start_times.pop(0) # remove and return first item
giuliomoro@15 239 elif len(start_times)<1: # upcoming event is 'stop'
giuliomoro@15 240 # draw playing segment (red) from segment_start to 'stop'
giuliomoro@15 241 currently_playing = True
giuliomoro@15 242 segment_stop = stop_times.pop(0) # remove and return first item
giuliomoro@15 243 elif start_times[0]<stop_times[0]: # upcoming event is 'play'
giuliomoro@15 244 # draw non-playing segment from segment_start to 'play'
giuliomoro@15 245 currently_playing = False
giuliomoro@15 246 segment_stop = start_times.pop(0) # remove and return first item
giuliomoro@15 247 else: # stop_times[0]<start_times[0]: upcoming event is 'stop'
giuliomoro@15 248 # draw playing segment (red) from segment_start to 'stop'
giuliomoro@15 249 currently_playing = True
giuliomoro@15 250 segment_stop = stop_times.pop(0) # remove and return first item
giuliomoro@15 251
giuliomoro@15 252 # draw segment
giuliomoro@15 253 plt.plot([segment_start, segment_stop], # x-values
giuliomoro@15 254 [previous_position, previous_position], # y-values
giuliomoro@15 255 color='r' if currently_playing else colormap[increment%len(colormap)],
giuliomoro@15 256 linewidth=3
giuliomoro@15 257 )
giuliomoro@15 258 segment_start = segment_stop # move on to next segment
giuliomoro@15 259 currently_playing = not currently_playing # toggle to draw final segment correctly
giuliomoro@15 260
giuliomoro@15 261 # draw final segment (horizontal line) from last 'segment_start' to current move event time
giuliomoro@15 262 plt.plot([segment_start, page_time], # x-values
giuliomoro@15 263 [previous_position, previous_position], # y-values
giuliomoro@15 264 # color depends on playing during move event or not:
giuliomoro@15 265 color='r' if currently_playing else colormap[increment%len(colormap)],
giuliomoro@15 266 linewidth=3
giuliomoro@15 267 )
giuliomoro@15 268
giuliomoro@15 269 # plt.plot([previous_time, page_time-time_offset], # x-values
giuliomoro@15 270 # [previous_position, previous_position], # y-values
giuliomoro@15 271 # color=colormap[increment%len(colormap)],
giuliomoro@15 272 # linewidth=3
giuliomoro@15 273 # )
giuliomoro@15 274
giuliomoro@15 275 # display fragment name at end
giuliomoro@15 276 plt.text(page_time,previous_position,\
giuliomoro@15 277 audio_id,color=colormap[increment%len(colormap)]) #,rotation=45
giuliomoro@15 278
giuliomoro@15 279 increment+=1 # to next audioelement
giuliomoro@15 280
giuliomoro@15 281 last_page_duration = page_time #-time_offset
giuliomoro@15 282 time_offset = page_time
giuliomoro@15 283
giuliomoro@15 284 if not plot_empty: # if plot is not empty, show and/or store
giuliomoro@15 285 # set plot parameters
giuliomoro@15 286 plt.title('Timeline ' + file + ": "+page_name)
giuliomoro@15 287 plt.xlabel('Time [seconds]')
giuliomoro@15 288 plt.xlim(0, last_page_duration)
giuliomoro@15 289 plt.ylabel('Rating') # default
giuliomoro@15 290 plt.ylim(0, 1) # rating between 0 and 1
giuliomoro@15 291
giuliomoro@15 292 # TO DO:
giuliomoro@15 293 # Y axis title and tick labels as specified in 'setup' for corresponding page
giuliomoro@15 294 # Different plots for different axes
giuliomoro@15 295
giuliomoro@15 296 #plt.show() # uncomment to show plot; comment when just saving
giuliomoro@15 297 #exit()
giuliomoro@15 298
giuliomoro@15 299 plt.savefig(timeline_folder+subject_id+"-"+page_name+".pdf", bbox_inches='tight')
giuliomoro@15 300 plt.close()
giuliomoro@15 301