Mercurial > hg > vamp-build-and-test
diff DEPENDENCIES/generic/include/boost/graph/graphviz.hpp @ 16:2665513ce2d3
Add boost headers
author | Chris Cannam |
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date | Tue, 05 Aug 2014 11:11:38 +0100 |
parents | |
children | c530137014c0 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/DEPENDENCIES/generic/include/boost/graph/graphviz.hpp Tue Aug 05 11:11:38 2014 +0100 @@ -0,0 +1,968 @@ +//======================================================================= +// Copyright 2001 University of Notre Dame. +// Copyright 2003 Jeremy Siek +// Authors: Lie-Quan Lee, Jeremy Siek, and Douglas Gregor +// +// Distributed under the Boost Software License, Version 1.0. (See +// accompanying file LICENSE_1_0.txt or copy at +// http://www.boost.org/LICENSE_1_0.txt) +//======================================================================= +#ifndef BOOST_GRAPHVIZ_HPP +#define BOOST_GRAPHVIZ_HPP + +#include <boost/config.hpp> +#include <string> +#include <map> +#include <iostream> +#include <fstream> +#include <stdio.h> // for FILE +#include <boost/property_map/property_map.hpp> +#include <boost/tuple/tuple.hpp> +#include <boost/graph/graph_traits.hpp> +#include <boost/graph/properties.hpp> +#include <boost/graph/subgraph.hpp> +#include <boost/graph/adjacency_list.hpp> +#include <boost/property_map/dynamic_property_map.hpp> +#include <boost/graph/overloading.hpp> +#include <boost/graph/dll_import_export.hpp> +#include <boost/graph/compressed_sparse_row_graph.hpp> +#include <boost/graph/iteration_macros.hpp> +#include <boost/spirit/include/classic_multi_pass.hpp> +#include <boost/lexical_cast.hpp> +#include <boost/static_assert.hpp> +#include <boost/algorithm/string/replace.hpp> +#include <boost/xpressive/xpressive_static.hpp> +#include <boost/foreach.hpp> + +namespace boost { + + template <typename directed_category> + struct graphviz_io_traits { + static std::string name() { + return "digraph"; + } + static std::string delimiter() { + return "->"; + } }; + + template <> + struct graphviz_io_traits <undirected_tag> { + static std::string name() { + return "graph"; + } + static std::string delimiter() { + return "--"; + } + }; + + struct default_writer { + void operator()(std::ostream&) const { + } + template <class VorE> + void operator()(std::ostream&, const VorE&) const { + } + }; + + template <typename T> + inline std::string escape_dot_string(const T& obj) { + using namespace boost::xpressive; + static sregex valid_unquoted_id = (((alpha | '_') >> *_w) | (!as_xpr('-') >> (('.' >> *_d) | (+_d >> !('.' >> *_d))))); + std::string s(boost::lexical_cast<std::string>(obj)); + if (regex_match(s, valid_unquoted_id)) { + return s; + } else { + boost::algorithm::replace_all(s, "\"", "\\\""); + return "\"" + s + "\""; + } + } + + template <class Name> + class label_writer { + public: + label_writer(Name _name) : name(_name) {} + template <class VertexOrEdge> + void operator()(std::ostream& out, const VertexOrEdge& v) const { + out << "[label=" << escape_dot_string(get(name, v)) << "]"; + } + private: + Name name; + }; + template <class Name> + inline label_writer<Name> + make_label_writer(Name n) { + return label_writer<Name>(n); + } + + enum edge_attribute_t { edge_attribute = 1111 }; + enum vertex_attribute_t { vertex_attribute = 2222 }; + enum graph_graph_attribute_t { graph_graph_attribute = 3333 }; + enum graph_vertex_attribute_t { graph_vertex_attribute = 4444 }; + enum graph_edge_attribute_t { graph_edge_attribute = 5555 }; + + BOOST_INSTALL_PROPERTY(edge, attribute); + BOOST_INSTALL_PROPERTY(vertex, attribute); + BOOST_INSTALL_PROPERTY(graph, graph_attribute); + BOOST_INSTALL_PROPERTY(graph, vertex_attribute); + BOOST_INSTALL_PROPERTY(graph, edge_attribute); + + + template <class Attribute> + inline void write_attributes(const Attribute& attr, std::ostream& out) { + typename Attribute::const_iterator i, iend; + i = attr.begin(); + iend = attr.end(); + + while ( i != iend ) { + out << i->first << "=" << escape_dot_string(i->second); + ++i; + if ( i != iend ) + out << ", "; + } + } + + template<typename Attributes> + inline void write_all_attributes(Attributes attributes, + const std::string& name, + std::ostream& out) + { + typename Attributes::const_iterator i = attributes.begin(), + end = attributes.end(); + if (i != end) { + out << name << " [\n"; + write_attributes(attributes, out); + out << "];\n"; + } + } + + inline void write_all_attributes(detail::error_property_not_found, + const std::string&, + std::ostream&) + { + // Do nothing - no attributes exist + } + + + + + template <typename GraphGraphAttributes, + typename GraphNodeAttributes, + typename GraphEdgeAttributes> + struct graph_attributes_writer + { + graph_attributes_writer(GraphGraphAttributes gg, + GraphNodeAttributes gn, + GraphEdgeAttributes ge) + : g_attributes(gg), n_attributes(gn), e_attributes(ge) { } + + void operator()(std::ostream& out) const { + write_all_attributes(g_attributes, "graph", out); + write_all_attributes(n_attributes, "node", out); + write_all_attributes(e_attributes, "edge", out); + } + GraphGraphAttributes g_attributes; + GraphNodeAttributes n_attributes; + GraphEdgeAttributes e_attributes; + }; + + template <typename GAttrMap, typename NAttrMap, typename EAttrMap> + graph_attributes_writer<GAttrMap, NAttrMap, EAttrMap> + make_graph_attributes_writer(const GAttrMap& g_attr, const NAttrMap& n_attr, + const EAttrMap& e_attr) { + return graph_attributes_writer<GAttrMap, NAttrMap, EAttrMap> + (g_attr, n_attr, e_attr); + } + + + template <typename Graph> + graph_attributes_writer + <typename graph_property<Graph, graph_graph_attribute_t>::type, + typename graph_property<Graph, graph_vertex_attribute_t>::type, + typename graph_property<Graph, graph_edge_attribute_t>::type> + make_graph_attributes_writer(const Graph& g) + { + typedef typename graph_property<Graph, graph_graph_attribute_t>::type + GAttrMap; + typedef typename graph_property<Graph, graph_vertex_attribute_t>::type + NAttrMap; + typedef typename graph_property<Graph, graph_edge_attribute_t>::type + EAttrMap; + GAttrMap gam = get_property(g, graph_graph_attribute); + NAttrMap nam = get_property(g, graph_vertex_attribute); + EAttrMap eam = get_property(g, graph_edge_attribute); + graph_attributes_writer<GAttrMap, NAttrMap, EAttrMap> writer(gam, nam, eam); + return writer; + } + + template <typename AttributeMap> + struct attributes_writer { + attributes_writer(AttributeMap attr) + : attributes(attr) { } + + template <class VorE> + void operator()(std::ostream& out, const VorE& e) const { + this->write_attribute(out, attributes[e]); + } + + private: + template<typename AttributeSequence> + void write_attribute(std::ostream& out, + const AttributeSequence& seq) const + { + if (!seq.empty()) { + out << "["; + write_attributes(seq, out); + out << "]"; + } + } + + void write_attribute(std::ostream&, + detail::error_property_not_found) const + { + } + AttributeMap attributes; + }; + + template <typename Graph> + attributes_writer + <typename property_map<Graph, edge_attribute_t>::const_type> + make_edge_attributes_writer(const Graph& g) + { + typedef typename property_map<Graph, edge_attribute_t>::const_type + EdgeAttributeMap; + return attributes_writer<EdgeAttributeMap>(get(edge_attribute, g)); + } + + template <typename Graph> + attributes_writer + <typename property_map<Graph, vertex_attribute_t>::const_type> + make_vertex_attributes_writer(const Graph& g) + { + typedef typename property_map<Graph, vertex_attribute_t>::const_type + VertexAttributeMap; + return attributes_writer<VertexAttributeMap>(get(vertex_attribute, g)); + } + + template <typename Graph, typename VertexPropertiesWriter, + typename EdgePropertiesWriter, typename GraphPropertiesWriter, + typename VertexID> + inline void + write_graphviz + (std::ostream& out, const Graph& g, + VertexPropertiesWriter vpw, + EdgePropertiesWriter epw, + GraphPropertiesWriter gpw, + VertexID vertex_id + BOOST_GRAPH_ENABLE_IF_MODELS_PARM(Graph,vertex_list_graph_tag)) + { + BOOST_CONCEPT_ASSERT((EdgeListGraphConcept<Graph>)); + + typedef typename graph_traits<Graph>::directed_category cat_type; + typedef graphviz_io_traits<cat_type> Traits; + std::string name = "G"; + out << Traits::name() << " " << escape_dot_string(name) << " {" << std::endl; + + gpw(out); //print graph properties + + typename graph_traits<Graph>::vertex_iterator i, end; + + for(boost::tie(i,end) = vertices(g); i != end; ++i) { + out << escape_dot_string(get(vertex_id, *i)); + vpw(out, *i); //print vertex attributes + out << ";" << std::endl; + } + typename graph_traits<Graph>::edge_iterator ei, edge_end; + for(boost::tie(ei, edge_end) = edges(g); ei != edge_end; ++ei) { + out << escape_dot_string(get(vertex_id, source(*ei, g))) << Traits::delimiter() << escape_dot_string(get(vertex_id, target(*ei, g))) << " "; + epw(out, *ei); //print edge attributes + out << ";" << std::endl; + } + out << "}" << std::endl; + } + + template <typename Graph, typename VertexPropertiesWriter, + typename EdgePropertiesWriter, typename GraphPropertiesWriter> + inline void + write_graphviz(std::ostream& out, const Graph& g, + VertexPropertiesWriter vpw, + EdgePropertiesWriter epw, + GraphPropertiesWriter gpw + BOOST_GRAPH_ENABLE_IF_MODELS_PARM(Graph,vertex_list_graph_tag)) + { write_graphviz(out, g, vpw, epw, gpw, get(vertex_index, g)); } + +#if !defined(BOOST_MSVC) || BOOST_MSVC > 1300 + // ambiguous overload problem with VC++ + template <typename Graph> + inline void + write_graphviz(std::ostream& out, const Graph& g + BOOST_GRAPH_ENABLE_IF_MODELS_PARM(Graph,vertex_list_graph_tag)) + { + default_writer dw; + default_writer gw; + write_graphviz(out, g, dw, dw, gw); + } +#endif + + template <typename Graph, typename VertexWriter> + inline void + write_graphviz(std::ostream& out, const Graph& g, VertexWriter vw + BOOST_GRAPH_ENABLE_IF_MODELS_PARM(Graph,vertex_list_graph_tag)) + { + default_writer dw; + default_writer gw; + write_graphviz(out, g, vw, dw, gw); + } + + template <typename Graph, typename VertexWriter, typename EdgeWriter> + inline void + write_graphviz(std::ostream& out, const Graph& g, + VertexWriter vw, EdgeWriter ew + BOOST_GRAPH_ENABLE_IF_MODELS_PARM(Graph,vertex_list_graph_tag)) + { + default_writer gw; + write_graphviz(out, g, vw, ew, gw); + } + + namespace detail { + + template <class Graph_, class RandomAccessIterator, class VertexID> + void write_graphviz_subgraph (std::ostream& out, + const subgraph<Graph_>& g, + RandomAccessIterator vertex_marker, + RandomAccessIterator edge_marker, + VertexID vertex_id) + { + typedef subgraph<Graph_> Graph; + typedef typename graph_traits<Graph>::vertex_descriptor Vertex; + typedef typename graph_traits<Graph>::directed_category cat_type; + typedef graphviz_io_traits<cat_type> Traits; + + typedef typename graph_property<Graph, graph_name_t>::type NameType; + const NameType& g_name = get_property(g, graph_name); + + if ( g.is_root() ) + out << Traits::name() ; + else + out << "subgraph"; + + out << " " << escape_dot_string(g_name) << " {" << std::endl; + + typename Graph::const_children_iterator i_child, j_child; + + //print graph/node/edge attributes +#if defined(BOOST_MSVC) && BOOST_MSVC <= 1300 + typedef typename graph_property<Graph, graph_graph_attribute_t>::type + GAttrMap; + typedef typename graph_property<Graph, graph_vertex_attribute_t>::type + NAttrMap; + typedef typename graph_property<Graph, graph_edge_attribute_t>::type + EAttrMap; + GAttrMap gam = get_property(g, graph_graph_attribute); + NAttrMap nam = get_property(g, graph_vertex_attribute); + EAttrMap eam = get_property(g, graph_edge_attribute); + graph_attributes_writer<GAttrMap, NAttrMap, EAttrMap> writer(gam, nam, eam); + writer(out); +#else + make_graph_attributes_writer(g)(out); +#endif + + //print subgraph + for ( boost::tie(i_child,j_child) = g.children(); + i_child != j_child; ++i_child ) + write_graphviz_subgraph(out, *i_child, vertex_marker, edge_marker, + vertex_id); + + // Print out vertices and edges not in the subgraphs. + + typename graph_traits<Graph>::vertex_iterator i, end; + typename graph_traits<Graph>::edge_iterator ei, edge_end; + + for(boost::tie(i,end) = vertices(g); i != end; ++i) { + Vertex v = g.local_to_global(*i); + int pos = get(vertex_id, v); + if ( vertex_marker[pos] ) { + vertex_marker[pos] = false; + out << escape_dot_string(pos); +#if defined(BOOST_MSVC) && BOOST_MSVC <= 1300 + typedef typename property_map<Graph, vertex_attribute_t>::const_type + VertexAttributeMap; + attributes_writer<VertexAttributeMap> vawriter(get(vertex_attribute, + g.root())); + vawriter(out, v); +#else + make_vertex_attributes_writer(g.root())(out, v); +#endif + out << ";" << std::endl; + } + } + + for (boost::tie(ei, edge_end) = edges(g); ei != edge_end; ++ei) { + Vertex u = g.local_to_global(source(*ei,g)), + v = g.local_to_global(target(*ei, g)); + int pos = get(get(edge_index, g.root()), g.local_to_global(*ei)); + if ( edge_marker[pos] ) { + edge_marker[pos] = false; + out << escape_dot_string(get(vertex_id, u)) << " " << Traits::delimiter() + << " " << escape_dot_string(get(vertex_id, v)); +#if defined(BOOST_MSVC) && BOOST_MSVC <= 1300 + typedef typename property_map<Graph, edge_attribute_t>::const_type + EdgeAttributeMap; + attributes_writer<EdgeAttributeMap> eawriter(get(edge_attribute, g)); + eawriter(out, *ei); +#else + make_edge_attributes_writer(g)(out, *ei); //print edge properties +#endif + out << ";" << std::endl; + } + } + out << "}" << std::endl; + } + } // namespace detail + + // requires graph_name graph property + template <typename Graph> + void write_graphviz(std::ostream& out, const subgraph<Graph>& g) { + std::vector<bool> edge_marker(num_edges(g), true); + std::vector<bool> vertex_marker(num_vertices(g), true); + + detail::write_graphviz_subgraph(out, g, + vertex_marker.begin(), + edge_marker.begin(), + get(vertex_index, g)); + } + + template <typename Graph> + void write_graphviz(const std::string& filename, const subgraph<Graph>& g) { + std::ofstream out(filename.c_str()); + std::vector<bool> edge_marker(num_edges(g), true); + std::vector<bool> vertex_marker(num_vertices(g), true); + + detail::write_graphviz_subgraph(out, g, + vertex_marker.begin(), + edge_marker.begin(), + get(vertex_index, g)); + } + + template <typename Graph, typename VertexID> + void write_graphviz(std::ostream& out, const subgraph<Graph>& g, + VertexID vertex_id) + { + std::vector<bool> edge_marker(num_edges(g), true); + std::vector<bool> vertex_marker(num_vertices(g), true); + + detail::write_graphviz_subgraph(out, g, + vertex_marker.begin(), + edge_marker.begin(), + vertex_id); + } + + template <typename Graph, typename VertexID> + void write_graphviz(const std::string& filename, const subgraph<Graph>& g, + VertexID vertex_id) + { + std::ofstream out(filename.c_str()); + std::vector<bool> edge_marker(num_edges(g), true); + std::vector<bool> vertex_marker(num_vertices(g), true); + + detail::write_graphviz_subgraph(out, g, + vertex_marker.begin(), + edge_marker.begin(), + vertex_id); + } + +#if 0 + // This interface has not worked for a long time + typedef std::map<std::string, std::string> GraphvizAttrList; + + typedef property<vertex_attribute_t, GraphvizAttrList> + GraphvizVertexProperty; + + typedef property<edge_attribute_t, GraphvizAttrList, + property<edge_index_t, int> > + GraphvizEdgeProperty; + + typedef property<graph_graph_attribute_t, GraphvizAttrList, + property<graph_vertex_attribute_t, GraphvizAttrList, + property<graph_edge_attribute_t, GraphvizAttrList, + property<graph_name_t, std::string> > > > + GraphvizGraphProperty; + + typedef subgraph<adjacency_list<vecS, + vecS, directedS, + GraphvizVertexProperty, + GraphvizEdgeProperty, + GraphvizGraphProperty> > + GraphvizDigraph; + + typedef subgraph<adjacency_list<vecS, + vecS, undirectedS, + GraphvizVertexProperty, + GraphvizEdgeProperty, + GraphvizGraphProperty> > + GraphvizGraph; + + // These four require linking the BGL-Graphviz library: libbgl-viz.a + // from the /src directory. + // Library has not existed for a while + extern void read_graphviz(const std::string& file, GraphvizDigraph& g); + extern void read_graphviz(FILE* file, GraphvizDigraph& g); + + extern void read_graphviz(const std::string& file, GraphvizGraph& g); + extern void read_graphviz(FILE* file, GraphvizGraph& g); +#endif + + class dynamic_properties_writer + { + public: + dynamic_properties_writer(const dynamic_properties& dp) : dp(&dp) { } + + template<typename Descriptor> + void operator()(std::ostream& out, Descriptor key) const + { + bool first = true; + for (dynamic_properties::const_iterator i = dp->begin(); + i != dp->end(); ++i) { + if (typeid(key) == i->second->key()) { + if (first) out << " ["; + else out << ", "; + first = false; + + out << i->first << "=" << escape_dot_string(i->second->get_string(key)); + } + } + + if (!first) out << "]"; + } + + private: + const dynamic_properties* dp; + }; + + class dynamic_vertex_properties_writer + { + public: + dynamic_vertex_properties_writer(const dynamic_properties& dp, + const std::string& node_id) + : dp(&dp), node_id(&node_id) { } + + template<typename Descriptor> + void operator()(std::ostream& out, Descriptor key) const + { + bool first = true; + for (dynamic_properties::const_iterator i = dp->begin(); + i != dp->end(); ++i) { + if (typeid(key) == i->second->key() + && i->first != *node_id) { + if (first) out << " ["; + else out << ", "; + first = false; + + out << i->first << "=" << escape_dot_string(i->second->get_string(key)); + } + } + + if (!first) out << "]"; + } + + private: + const dynamic_properties* dp; + const std::string* node_id; + }; + + namespace graph { namespace detail { + + template<typename Vertex> + struct node_id_property_map + { + typedef std::string value_type; + typedef value_type reference; + typedef Vertex key_type; + typedef readable_property_map_tag category; + + node_id_property_map() {} + + node_id_property_map(const dynamic_properties& dp, + const std::string& node_id) + : dp(&dp), node_id(&node_id) { } + + const dynamic_properties* dp; + const std::string* node_id; + }; + + template<typename Vertex> + inline std::string + get(node_id_property_map<Vertex> pm, + typename node_id_property_map<Vertex>::key_type v) + { return get(*pm.node_id, *pm.dp, v); } + + } } // end namespace graph::detail + + template<typename Graph> + inline void + write_graphviz_dp(std::ostream& out, const Graph& g, + const dynamic_properties& dp, + const std::string& node_id = "node_id" + BOOST_GRAPH_ENABLE_IF_MODELS_PARM(Graph,vertex_list_graph_tag)) + { + typedef typename graph_traits<Graph>::vertex_descriptor Vertex; + write_graphviz_dp(out, g, dp, node_id, + graph::detail::node_id_property_map<Vertex>(dp, node_id)); + } + + template<typename Graph, typename VertexID> + void + write_graphviz_dp(std::ostream& out, const Graph& g, + const dynamic_properties& dp, const std::string& node_id, + VertexID id + BOOST_GRAPH_ENABLE_IF_MODELS_PARM(Graph,vertex_list_graph_tag)) + { + write_graphviz + (out, g, + /*vertex_writer=*/dynamic_vertex_properties_writer(dp, node_id), + /*edge_writer=*/dynamic_properties_writer(dp), + /*graph_writer=*/default_writer(), + id); + } + +///////////////////////////////////////////////////////////////////////////// +// Graph reader exceptions +///////////////////////////////////////////////////////////////////////////// +struct graph_exception : public std::exception { + virtual ~graph_exception() throw() {} + virtual const char* what() const throw() = 0; +}; + +struct bad_parallel_edge : public graph_exception { + std::string from; + std::string to; + mutable std::string statement; + bad_parallel_edge(const std::string& i, const std::string& j) : + from(i), to(j) {} + + virtual ~bad_parallel_edge() throw() {} + const char* what() const throw() { + if(statement.empty()) + statement = + std::string("Failed to add parallel edge: (") + + from + "," + to + ")\n"; + + return statement.c_str(); + } +}; + +struct directed_graph_error : public graph_exception { + virtual ~directed_graph_error() throw() {} + virtual const char* what() const throw() { + return + "read_graphviz: " + "Tried to read a directed graph into an undirected graph."; + } +}; + +struct undirected_graph_error : public graph_exception { + virtual ~undirected_graph_error() throw() {} + virtual const char* what() const throw() { + return + "read_graphviz: " + "Tried to read an undirected graph into a directed graph."; + } +}; + +struct bad_graphviz_syntax: public graph_exception { + std::string errmsg; + bad_graphviz_syntax(const std::string& errmsg) + : errmsg(errmsg) {} + const char* what() const throw () {return errmsg.c_str();} + ~bad_graphviz_syntax() throw () {}; +}; + +namespace detail { namespace graph { + +typedef std::string id_t; +typedef id_t node_t; + +// edges are not uniquely determined by adjacent nodes +class edge_t { + int idx_; + explicit edge_t(int i) : idx_(i) {} +public: + static edge_t new_edge() { + static int idx = 0; + return edge_t(idx++); + }; + + bool operator==(const edge_t& rhs) const { + return idx_ == rhs.idx_; + } + bool operator<(const edge_t& rhs) const { + return idx_ < rhs.idx_; + } +}; + +class mutate_graph +{ + public: + virtual ~mutate_graph() {} + virtual bool is_directed() const = 0; + virtual void do_add_vertex(const node_t& node) = 0; + + virtual void + do_add_edge(const edge_t& edge, const node_t& source, const node_t& target) + = 0; + + virtual void + set_node_property(const id_t& key, const node_t& node, const id_t& value) = 0; + + virtual void + set_edge_property(const id_t& key, const edge_t& edge, const id_t& value) = 0; + + virtual void // RG: need new second parameter to support BGL subgraphs + set_graph_property(const id_t& key, const id_t& value) = 0; + + virtual void + finish_building_graph() = 0; +}; + +template<typename MutableGraph> +class mutate_graph_impl : public mutate_graph +{ + typedef typename graph_traits<MutableGraph>::vertex_descriptor bgl_vertex_t; + typedef typename graph_traits<MutableGraph>::edge_descriptor bgl_edge_t; + + public: + mutate_graph_impl(MutableGraph& graph, dynamic_properties& dp, + std::string node_id_prop) + : graph_(graph), dp_(dp), node_id_prop_(node_id_prop) { } + + ~mutate_graph_impl() {} + + bool is_directed() const + { + return + boost::is_convertible< + typename boost::graph_traits<MutableGraph>::directed_category, + boost::directed_tag>::value; + } + + virtual void do_add_vertex(const node_t& node) + { + // Add the node to the graph. + bgl_vertex_t v = add_vertex(graph_); + + // Set up a mapping from name to BGL vertex. + bgl_nodes.insert(std::make_pair(node, v)); + + // node_id_prop_ allows the caller to see the real id names for nodes. + put(node_id_prop_, dp_, v, node); + } + + void + do_add_edge(const edge_t& edge, const node_t& source, const node_t& target) + { + std::pair<bgl_edge_t, bool> result = + add_edge(bgl_nodes[source], bgl_nodes[target], graph_); + + if(!result.second) { + // In the case of no parallel edges allowed + boost::throw_exception(bad_parallel_edge(source, target)); + } else { + bgl_edges.insert(std::make_pair(edge, result.first)); + } + } + + void + set_node_property(const id_t& key, const node_t& node, const id_t& value) + { + put(key, dp_, bgl_nodes[node], value); + } + + void + set_edge_property(const id_t& key, const edge_t& edge, const id_t& value) + { + put(key, dp_, bgl_edges[edge], value); + } + + void + set_graph_property(const id_t& key, const id_t& value) + { + /* RG: pointer to graph prevents copying */ + put(key, dp_, &graph_, value); + } + + void finish_building_graph() {} + + + protected: + MutableGraph& graph_; + dynamic_properties& dp_; + std::string node_id_prop_; + std::map<node_t, bgl_vertex_t> bgl_nodes; + std::map<edge_t, bgl_edge_t> bgl_edges; +}; + +template<typename Directed, + typename VertexProperty, + typename EdgeProperty, + typename GraphProperty, + typename Vertex, + typename EdgeIndex> +class mutate_graph_impl<compressed_sparse_row_graph<Directed, VertexProperty, EdgeProperty, GraphProperty, Vertex, EdgeIndex> > + : public mutate_graph +{ + typedef compressed_sparse_row_graph<Directed, VertexProperty, EdgeProperty, GraphProperty, Vertex, EdgeIndex> CSRGraph; + typedef typename graph_traits<CSRGraph>::vertices_size_type bgl_vertex_t; + typedef typename graph_traits<CSRGraph>::edges_size_type bgl_edge_t; + typedef typename graph_traits<CSRGraph>::edge_descriptor edge_descriptor; + + public: + mutate_graph_impl(CSRGraph& graph, dynamic_properties& dp, + std::string node_id_prop) + : graph_(graph), dp_(dp), vertex_count(0), node_id_prop_(node_id_prop) { } + + ~mutate_graph_impl() {} + + void finish_building_graph() { + typedef compressed_sparse_row_graph<directedS, no_property, bgl_edge_t, GraphProperty, Vertex, EdgeIndex> TempCSRGraph; + TempCSRGraph temp(edges_are_unsorted_multi_pass, + edges_to_add.begin(), edges_to_add.end(), + counting_iterator<bgl_edge_t>(0), + vertex_count); + set_property(temp, graph_all, get_property(graph_, graph_all)); + graph_.assign(temp); // Copies structure, not properties + std::vector<edge_descriptor> edge_permutation_from_sorting(num_edges(temp)); + BGL_FORALL_EDGES_T(e, temp, TempCSRGraph) { + edge_permutation_from_sorting[temp[e]] = e; + } + typedef boost::tuple<id_t, bgl_vertex_t, id_t> v_prop; + BOOST_FOREACH(const v_prop& t, vertex_props) { + put(boost::get<0>(t), dp_, boost::get<1>(t), boost::get<2>(t)); + } + typedef boost::tuple<id_t, bgl_edge_t, id_t> e_prop; + BOOST_FOREACH(const e_prop& t, edge_props) { + put(boost::get<0>(t), dp_, edge_permutation_from_sorting[boost::get<1>(t)], boost::get<2>(t)); + } + } + + bool is_directed() const + { + return + boost::is_convertible< + typename boost::graph_traits<CSRGraph>::directed_category, + boost::directed_tag>::value; + } + + virtual void do_add_vertex(const node_t& node) + { + // Add the node to the graph. + bgl_vertex_t v = vertex_count++; + + // Set up a mapping from name to BGL vertex. + bgl_nodes.insert(std::make_pair(node, v)); + + // node_id_prop_ allows the caller to see the real id names for nodes. + vertex_props.push_back(boost::make_tuple(node_id_prop_, v, node)); + } + + void + do_add_edge(const edge_t& edge, const node_t& source, const node_t& target) + { + bgl_edge_t result = edges_to_add.size(); + edges_to_add.push_back(std::make_pair(bgl_nodes[source], bgl_nodes[target])); + bgl_edges.insert(std::make_pair(edge, result)); + } + + void + set_node_property(const id_t& key, const node_t& node, const id_t& value) + { + vertex_props.push_back(boost::make_tuple(key, bgl_nodes[node], value)); + } + + void + set_edge_property(const id_t& key, const edge_t& edge, const id_t& value) + { + edge_props.push_back(boost::make_tuple(key, bgl_edges[edge], value)); + } + + void + set_graph_property(const id_t& key, const id_t& value) + { + /* RG: pointer to graph prevents copying */ + put(key, dp_, &graph_, value); + } + + + protected: + CSRGraph& graph_; + dynamic_properties& dp_; + bgl_vertex_t vertex_count; + std::string node_id_prop_; + std::vector<boost::tuple<id_t, bgl_vertex_t, id_t> > vertex_props; + std::vector<boost::tuple<id_t, bgl_edge_t, id_t> > edge_props; + std::vector<std::pair<bgl_vertex_t, bgl_vertex_t> > edges_to_add; + std::map<node_t, bgl_vertex_t> bgl_nodes; + std::map<edge_t, bgl_edge_t> bgl_edges; +}; + +} } } // end namespace boost::detail::graph + +#ifdef BOOST_GRAPH_USE_SPIRIT_PARSER +# ifndef BOOST_GRAPH_READ_GRAPHVIZ_ITERATORS +# define BOOST_GRAPH_READ_GRAPHVIZ_ITERATORS +# endif +# include <boost/graph/detail/read_graphviz_spirit.hpp> +#else // New default parser +# include <boost/graph/detail/read_graphviz_new.hpp> +#endif // BOOST_GRAPH_USE_SPIRIT_PARSER + +namespace boost { + +// Parse the passed string as a GraphViz dot file. +template <typename MutableGraph> +bool read_graphviz(const std::string& data, + MutableGraph& graph, + dynamic_properties& dp, + std::string const& node_id = "node_id") { +#ifdef BOOST_GRAPH_USE_SPIRIT_PARSER + return read_graphviz_spirit(data.begin(), data.end(), graph, dp, node_id); +#else // Non-Spirit parser + return read_graphviz_new(data,graph,dp,node_id); +#endif +} + +// Parse the passed iterator range as a GraphViz dot file. +template <typename InputIterator, typename MutableGraph> +bool read_graphviz(InputIterator user_first, + InputIterator user_last, + MutableGraph& graph, + dynamic_properties& dp, + std::string const& node_id = "node_id") { +#ifdef BOOST_GRAPH_USE_SPIRIT_PARSER + typedef InputIterator is_t; + typedef boost::spirit::classic::multi_pass<is_t> iterator_t; + + iterator_t first(boost::spirit::classic::make_multi_pass(user_first)); + iterator_t last(boost::spirit::classic::make_multi_pass(user_last)); + + return read_graphviz_spirit(first, last, graph, dp, node_id); +#else // Non-Spirit parser + return read_graphviz_new(std::string(user_first, user_last), graph, dp, node_id); +#endif +} + +// Parse the passed stream as a GraphViz dot file. +template <typename MutableGraph> +bool read_graphviz(std::istream& in, MutableGraph& graph, + dynamic_properties& dp, + std::string const& node_id = "node_id") +{ + typedef std::istream_iterator<char> is_t; + in >> std::noskipws; + return read_graphviz(is_t(in), is_t(), graph, dp, node_id); +} + +} // namespace boost + +#ifdef BOOST_GRAPH_USE_MPI +# include <boost/graph/distributed/graphviz.hpp> +#endif + +#endif // BOOST_GRAPHVIZ_HPP