annotate DEPENDENCIES/generic/include/boost/random/binomial_distribution.hpp @ 125:34e428693f5d vext

Vext -> Repoint
author Chris Cannam
date Thu, 14 Jun 2018 11:15:39 +0100
parents c530137014c0
children
rev   line source
Chris@16 1 /* boost random/binomial_distribution.hpp header file
Chris@16 2 *
Chris@16 3 * Copyright Steven Watanabe 2010
Chris@16 4 * Distributed under the Boost Software License, Version 1.0. (See
Chris@16 5 * accompanying file LICENSE_1_0.txt or copy at
Chris@16 6 * http://www.boost.org/LICENSE_1_0.txt)
Chris@16 7 *
Chris@16 8 * See http://www.boost.org for most recent version including documentation.
Chris@16 9 *
Chris@101 10 * $Id$
Chris@16 11 */
Chris@16 12
Chris@16 13 #ifndef BOOST_RANDOM_BINOMIAL_DISTRIBUTION_HPP_INCLUDED
Chris@16 14 #define BOOST_RANDOM_BINOMIAL_DISTRIBUTION_HPP_INCLUDED
Chris@16 15
Chris@16 16 #include <boost/config/no_tr1/cmath.hpp>
Chris@16 17 #include <cstdlib>
Chris@16 18 #include <iosfwd>
Chris@16 19
Chris@16 20 #include <boost/random/detail/config.hpp>
Chris@16 21 #include <boost/random/uniform_01.hpp>
Chris@16 22
Chris@16 23 #include <boost/random/detail/disable_warnings.hpp>
Chris@16 24
Chris@16 25 namespace boost {
Chris@16 26 namespace random {
Chris@16 27
Chris@16 28 namespace detail {
Chris@16 29
Chris@16 30 template<class RealType>
Chris@16 31 struct binomial_table {
Chris@16 32 static const RealType table[10];
Chris@16 33 };
Chris@16 34
Chris@16 35 template<class RealType>
Chris@16 36 const RealType binomial_table<RealType>::table[10] = {
Chris@16 37 0.08106146679532726,
Chris@16 38 0.04134069595540929,
Chris@16 39 0.02767792568499834,
Chris@16 40 0.02079067210376509,
Chris@16 41 0.01664469118982119,
Chris@16 42 0.01387612882307075,
Chris@16 43 0.01189670994589177,
Chris@16 44 0.01041126526197209,
Chris@16 45 0.009255462182712733,
Chris@16 46 0.008330563433362871
Chris@16 47 };
Chris@16 48
Chris@16 49 }
Chris@16 50
Chris@16 51 /**
Chris@16 52 * The binomial distribution is an integer valued distribution with
Chris@16 53 * two parameters, @c t and @c p. The values of the distribution
Chris@16 54 * are within the range [0,t].
Chris@16 55 *
Chris@16 56 * The distribution function is
Chris@16 57 * \f$\displaystyle P(k) = {t \choose k}p^k(1-p)^{t-k}\f$.
Chris@16 58 *
Chris@16 59 * The algorithm used is the BTRD algorithm described in
Chris@16 60 *
Chris@16 61 * @blockquote
Chris@16 62 * "The generation of binomial random variates", Wolfgang Hormann,
Chris@16 63 * Journal of Statistical Computation and Simulation, Volume 46,
Chris@16 64 * Issue 1 & 2 April 1993 , pages 101 - 110
Chris@16 65 * @endblockquote
Chris@16 66 */
Chris@16 67 template<class IntType = int, class RealType = double>
Chris@16 68 class binomial_distribution {
Chris@16 69 public:
Chris@16 70 typedef IntType result_type;
Chris@16 71 typedef RealType input_type;
Chris@16 72
Chris@16 73 class param_type {
Chris@16 74 public:
Chris@16 75 typedef binomial_distribution distribution_type;
Chris@16 76 /**
Chris@16 77 * Construct a param_type object. @c t and @c p
Chris@16 78 * are the parameters of the distribution.
Chris@16 79 *
Chris@16 80 * Requires: t >=0 && 0 <= p <= 1
Chris@16 81 */
Chris@16 82 explicit param_type(IntType t_arg = 1, RealType p_arg = RealType (0.5))
Chris@16 83 : _t(t_arg), _p(p_arg)
Chris@16 84 {}
Chris@16 85 /** Returns the @c t parameter of the distribution. */
Chris@16 86 IntType t() const { return _t; }
Chris@16 87 /** Returns the @c p parameter of the distribution. */
Chris@16 88 RealType p() const { return _p; }
Chris@16 89 #ifndef BOOST_RANDOM_NO_STREAM_OPERATORS
Chris@16 90 /** Writes the parameters of the distribution to a @c std::ostream. */
Chris@16 91 template<class CharT, class Traits>
Chris@16 92 friend std::basic_ostream<CharT,Traits>&
Chris@16 93 operator<<(std::basic_ostream<CharT,Traits>& os,
Chris@16 94 const param_type& parm)
Chris@16 95 {
Chris@16 96 os << parm._p << " " << parm._t;
Chris@16 97 return os;
Chris@16 98 }
Chris@16 99
Chris@16 100 /** Reads the parameters of the distribution from a @c std::istream. */
Chris@16 101 template<class CharT, class Traits>
Chris@16 102 friend std::basic_istream<CharT,Traits>&
Chris@16 103 operator>>(std::basic_istream<CharT,Traits>& is, param_type& parm)
Chris@16 104 {
Chris@16 105 is >> parm._p >> std::ws >> parm._t;
Chris@16 106 return is;
Chris@16 107 }
Chris@16 108 #endif
Chris@16 109 /** Returns true if the parameters have the same values. */
Chris@16 110 friend bool operator==(const param_type& lhs, const param_type& rhs)
Chris@16 111 {
Chris@16 112 return lhs._t == rhs._t && lhs._p == rhs._p;
Chris@16 113 }
Chris@16 114 /** Returns true if the parameters have different values. */
Chris@16 115 friend bool operator!=(const param_type& lhs, const param_type& rhs)
Chris@16 116 {
Chris@16 117 return !(lhs == rhs);
Chris@16 118 }
Chris@16 119 private:
Chris@16 120 IntType _t;
Chris@16 121 RealType _p;
Chris@16 122 };
Chris@16 123
Chris@16 124 /**
Chris@16 125 * Construct a @c binomial_distribution object. @c t and @c p
Chris@16 126 * are the parameters of the distribution.
Chris@16 127 *
Chris@16 128 * Requires: t >=0 && 0 <= p <= 1
Chris@16 129 */
Chris@16 130 explicit binomial_distribution(IntType t_arg = 1,
Chris@16 131 RealType p_arg = RealType(0.5))
Chris@16 132 : _t(t_arg), _p(p_arg)
Chris@16 133 {
Chris@16 134 init();
Chris@16 135 }
Chris@16 136
Chris@16 137 /**
Chris@16 138 * Construct an @c binomial_distribution object from the
Chris@16 139 * parameters.
Chris@16 140 */
Chris@16 141 explicit binomial_distribution(const param_type& parm)
Chris@16 142 : _t(parm.t()), _p(parm.p())
Chris@16 143 {
Chris@16 144 init();
Chris@16 145 }
Chris@16 146
Chris@16 147 /**
Chris@16 148 * Returns a random variate distributed according to the
Chris@16 149 * binomial distribution.
Chris@16 150 */
Chris@16 151 template<class URNG>
Chris@16 152 IntType operator()(URNG& urng) const
Chris@16 153 {
Chris@16 154 if(use_inversion()) {
Chris@16 155 if(0.5 < _p) {
Chris@16 156 return _t - invert(_t, 1-_p, urng);
Chris@16 157 } else {
Chris@16 158 return invert(_t, _p, urng);
Chris@16 159 }
Chris@16 160 } else if(0.5 < _p) {
Chris@16 161 return _t - generate(urng);
Chris@16 162 } else {
Chris@16 163 return generate(urng);
Chris@16 164 }
Chris@16 165 }
Chris@16 166
Chris@16 167 /**
Chris@16 168 * Returns a random variate distributed according to the
Chris@16 169 * binomial distribution with parameters specified by @c param.
Chris@16 170 */
Chris@16 171 template<class URNG>
Chris@16 172 IntType operator()(URNG& urng, const param_type& parm) const
Chris@16 173 {
Chris@16 174 return binomial_distribution(parm)(urng);
Chris@16 175 }
Chris@16 176
Chris@16 177 /** Returns the @c t parameter of the distribution. */
Chris@16 178 IntType t() const { return _t; }
Chris@16 179 /** Returns the @c p parameter of the distribution. */
Chris@16 180 RealType p() const { return _p; }
Chris@16 181
Chris@16 182 /** Returns the smallest value that the distribution can produce. */
Chris@16 183 IntType min BOOST_PREVENT_MACRO_SUBSTITUTION() const { return 0; }
Chris@16 184 /** Returns the largest value that the distribution can produce. */
Chris@16 185 IntType max BOOST_PREVENT_MACRO_SUBSTITUTION() const { return _t; }
Chris@16 186
Chris@16 187 /** Returns the parameters of the distribution. */
Chris@16 188 param_type param() const { return param_type(_t, _p); }
Chris@16 189 /** Sets parameters of the distribution. */
Chris@16 190 void param(const param_type& parm)
Chris@16 191 {
Chris@16 192 _t = parm.t();
Chris@16 193 _p = parm.p();
Chris@16 194 init();
Chris@16 195 }
Chris@16 196
Chris@16 197 /**
Chris@16 198 * Effects: Subsequent uses of the distribution do not depend
Chris@16 199 * on values produced by any engine prior to invoking reset.
Chris@16 200 */
Chris@16 201 void reset() { }
Chris@16 202
Chris@16 203 #ifndef BOOST_RANDOM_NO_STREAM_OPERATORS
Chris@16 204 /** Writes the parameters of the distribution to a @c std::ostream. */
Chris@16 205 template<class CharT, class Traits>
Chris@16 206 friend std::basic_ostream<CharT,Traits>&
Chris@16 207 operator<<(std::basic_ostream<CharT,Traits>& os,
Chris@16 208 const binomial_distribution& bd)
Chris@16 209 {
Chris@16 210 os << bd.param();
Chris@16 211 return os;
Chris@16 212 }
Chris@16 213
Chris@16 214 /** Reads the parameters of the distribution from a @c std::istream. */
Chris@16 215 template<class CharT, class Traits>
Chris@16 216 friend std::basic_istream<CharT,Traits>&
Chris@16 217 operator>>(std::basic_istream<CharT,Traits>& is, binomial_distribution& bd)
Chris@16 218 {
Chris@16 219 bd.read(is);
Chris@16 220 return is;
Chris@16 221 }
Chris@16 222 #endif
Chris@16 223
Chris@16 224 /** Returns true if the two distributions will produce the same
Chris@16 225 sequence of values, given equal generators. */
Chris@16 226 friend bool operator==(const binomial_distribution& lhs,
Chris@16 227 const binomial_distribution& rhs)
Chris@16 228 {
Chris@16 229 return lhs._t == rhs._t && lhs._p == rhs._p;
Chris@16 230 }
Chris@16 231 /** Returns true if the two distributions could produce different
Chris@16 232 sequences of values, given equal generators. */
Chris@16 233 friend bool operator!=(const binomial_distribution& lhs,
Chris@16 234 const binomial_distribution& rhs)
Chris@16 235 {
Chris@16 236 return !(lhs == rhs);
Chris@16 237 }
Chris@16 238
Chris@16 239 private:
Chris@16 240
Chris@16 241 /// @cond show_private
Chris@16 242
Chris@16 243 template<class CharT, class Traits>
Chris@16 244 void read(std::basic_istream<CharT, Traits>& is) {
Chris@16 245 param_type parm;
Chris@16 246 if(is >> parm) {
Chris@16 247 param(parm);
Chris@16 248 }
Chris@16 249 }
Chris@16 250
Chris@16 251 bool use_inversion() const
Chris@16 252 {
Chris@16 253 // BTRD is safe when np >= 10
Chris@16 254 return m < 11;
Chris@16 255 }
Chris@16 256
Chris@16 257 // computes the correction factor for the Stirling approximation
Chris@16 258 // for log(k!)
Chris@16 259 static RealType fc(IntType k)
Chris@16 260 {
Chris@16 261 if(k < 10) return detail::binomial_table<RealType>::table[k];
Chris@16 262 else {
Chris@16 263 RealType ikp1 = RealType(1) / (k + 1);
Chris@16 264 return (RealType(1)/12
Chris@16 265 - (RealType(1)/360
Chris@16 266 - (RealType(1)/1260)*(ikp1*ikp1))*(ikp1*ikp1))*ikp1;
Chris@16 267 }
Chris@16 268 }
Chris@16 269
Chris@16 270 void init()
Chris@16 271 {
Chris@16 272 using std::sqrt;
Chris@16 273 using std::pow;
Chris@16 274
Chris@16 275 RealType p = (0.5 < _p)? (1 - _p) : _p;
Chris@16 276 IntType t = _t;
Chris@16 277
Chris@16 278 m = static_cast<IntType>((t+1)*p);
Chris@16 279
Chris@16 280 if(use_inversion()) {
Chris@16 281 q_n = pow((1 - p), static_cast<RealType>(t));
Chris@16 282 } else {
Chris@16 283 btrd.r = p/(1-p);
Chris@16 284 btrd.nr = (t+1)*btrd.r;
Chris@16 285 btrd.npq = t*p*(1-p);
Chris@16 286 RealType sqrt_npq = sqrt(btrd.npq);
Chris@16 287 btrd.b = 1.15 + 2.53 * sqrt_npq;
Chris@16 288 btrd.a = -0.0873 + 0.0248*btrd.b + 0.01*p;
Chris@16 289 btrd.c = t*p + 0.5;
Chris@16 290 btrd.alpha = (2.83 + 5.1/btrd.b) * sqrt_npq;
Chris@16 291 btrd.v_r = 0.92 - 4.2/btrd.b;
Chris@16 292 btrd.u_rv_r = 0.86*btrd.v_r;
Chris@16 293 }
Chris@16 294 }
Chris@16 295
Chris@16 296 template<class URNG>
Chris@16 297 result_type generate(URNG& urng) const
Chris@16 298 {
Chris@16 299 using std::floor;
Chris@16 300 using std::abs;
Chris@16 301 using std::log;
Chris@16 302
Chris@16 303 while(true) {
Chris@16 304 RealType u;
Chris@16 305 RealType v = uniform_01<RealType>()(urng);
Chris@16 306 if(v <= btrd.u_rv_r) {
Chris@16 307 RealType u = v/btrd.v_r - 0.43;
Chris@16 308 return static_cast<IntType>(floor(
Chris@16 309 (2*btrd.a/(0.5 - abs(u)) + btrd.b)*u + btrd.c));
Chris@16 310 }
Chris@16 311
Chris@16 312 if(v >= btrd.v_r) {
Chris@16 313 u = uniform_01<RealType>()(urng) - 0.5;
Chris@16 314 } else {
Chris@16 315 u = v/btrd.v_r - 0.93;
Chris@16 316 u = ((u < 0)? -0.5 : 0.5) - u;
Chris@16 317 v = uniform_01<RealType>()(urng) * btrd.v_r;
Chris@16 318 }
Chris@16 319
Chris@16 320 RealType us = 0.5 - abs(u);
Chris@16 321 IntType k = static_cast<IntType>(floor((2*btrd.a/us + btrd.b)*u + btrd.c));
Chris@16 322 if(k < 0 || k > _t) continue;
Chris@16 323 v = v*btrd.alpha/(btrd.a/(us*us) + btrd.b);
Chris@16 324 RealType km = abs(k - m);
Chris@16 325 if(km <= 15) {
Chris@16 326 RealType f = 1;
Chris@16 327 if(m < k) {
Chris@16 328 IntType i = m;
Chris@16 329 do {
Chris@16 330 ++i;
Chris@16 331 f = f*(btrd.nr/i - btrd.r);
Chris@16 332 } while(i != k);
Chris@16 333 } else if(m > k) {
Chris@16 334 IntType i = k;
Chris@16 335 do {
Chris@16 336 ++i;
Chris@16 337 v = v*(btrd.nr/i - btrd.r);
Chris@16 338 } while(i != m);
Chris@16 339 }
Chris@16 340 if(v <= f) return k;
Chris@16 341 else continue;
Chris@16 342 } else {
Chris@16 343 // final acceptance/rejection
Chris@16 344 v = log(v);
Chris@16 345 RealType rho =
Chris@16 346 (km/btrd.npq)*(((km/3. + 0.625)*km + 1./6)/btrd.npq + 0.5);
Chris@16 347 RealType t = -km*km/(2*btrd.npq);
Chris@16 348 if(v < t - rho) return k;
Chris@16 349 if(v > t + rho) continue;
Chris@16 350
Chris@16 351 IntType nm = _t - m + 1;
Chris@16 352 RealType h = (m + 0.5)*log((m + 1)/(btrd.r*nm))
Chris@16 353 + fc(m) + fc(_t - m);
Chris@16 354
Chris@16 355 IntType nk = _t - k + 1;
Chris@16 356 if(v <= h + (_t+1)*log(static_cast<RealType>(nm)/nk)
Chris@16 357 + (k + 0.5)*log(nk*btrd.r/(k+1))
Chris@16 358 - fc(k)
Chris@16 359 - fc(_t - k))
Chris@16 360 {
Chris@16 361 return k;
Chris@16 362 } else {
Chris@16 363 continue;
Chris@16 364 }
Chris@16 365 }
Chris@16 366 }
Chris@16 367 }
Chris@16 368
Chris@16 369 template<class URNG>
Chris@16 370 IntType invert(IntType t, RealType p, URNG& urng) const
Chris@16 371 {
Chris@16 372 RealType q = 1 - p;
Chris@16 373 RealType s = p / q;
Chris@16 374 RealType a = (t + 1) * s;
Chris@16 375 RealType r = q_n;
Chris@16 376 RealType u = uniform_01<RealType>()(urng);
Chris@16 377 IntType x = 0;
Chris@16 378 while(u > r) {
Chris@16 379 u = u - r;
Chris@16 380 ++x;
Chris@101 381 RealType r1 = ((a/x) - s) * r;
Chris@101 382 // If r gets too small then the round-off error
Chris@101 383 // becomes a problem. At this point, p(i) is
Chris@101 384 // decreasing exponentially, so if we just call
Chris@101 385 // it 0, it's close enough. Note that the
Chris@101 386 // minimum value of q_n is about 1e-7, so we
Chris@101 387 // may need to be a little careful to make sure that
Chris@101 388 // we don't terminate the first time through the loop
Chris@101 389 // for float. (Hence the test that r is decreasing)
Chris@101 390 if(r1 < std::numeric_limits<RealType>::epsilon() && r1 < r) {
Chris@101 391 break;
Chris@101 392 }
Chris@101 393 r = r1;
Chris@16 394 }
Chris@16 395 return x;
Chris@16 396 }
Chris@16 397
Chris@16 398 // parameters
Chris@16 399 IntType _t;
Chris@16 400 RealType _p;
Chris@16 401
Chris@16 402 // common data
Chris@16 403 IntType m;
Chris@16 404
Chris@16 405 union {
Chris@16 406 // for btrd
Chris@16 407 struct {
Chris@16 408 RealType r;
Chris@16 409 RealType nr;
Chris@16 410 RealType npq;
Chris@16 411 RealType b;
Chris@16 412 RealType a;
Chris@16 413 RealType c;
Chris@16 414 RealType alpha;
Chris@16 415 RealType v_r;
Chris@16 416 RealType u_rv_r;
Chris@16 417 } btrd;
Chris@16 418 // for inversion
Chris@16 419 RealType q_n;
Chris@16 420 };
Chris@16 421
Chris@16 422 /// @endcond
Chris@16 423 };
Chris@16 424
Chris@16 425 }
Chris@16 426
Chris@16 427 // backwards compatibility
Chris@16 428 using random::binomial_distribution;
Chris@16 429
Chris@16 430 }
Chris@16 431
Chris@16 432 #include <boost/random/detail/enable_warnings.hpp>
Chris@16 433
Chris@16 434 #endif