annotate rdf/RDFImporter.cpp @ 584:bf1f6d68a142

* Add computed_by property for signal features
author Chris Cannam
date Fri, 08 May 2009 09:48:07 +0000
parents 2e0c987a12bd
children d04b8674b710
rev   line source
Chris@439 1 /* -*- c-basic-offset: 4 indent-tabs-mode: nil -*- vi:set ts=8 sts=4 sw=4: */
Chris@439 2
Chris@439 3 /*
Chris@439 4 Sonic Visualiser
Chris@439 5 An audio file viewer and annotation editor.
Chris@439 6 Centre for Digital Music, Queen Mary, University of London.
Chris@439 7 This file copyright 2008 QMUL.
Chris@439 8
Chris@439 9 This program is free software; you can redistribute it and/or
Chris@439 10 modify it under the terms of the GNU General Public License as
Chris@439 11 published by the Free Software Foundation; either version 2 of the
Chris@439 12 License, or (at your option) any later version. See the file
Chris@439 13 COPYING included with this distribution for more information.
Chris@439 14 */
Chris@439 15
Chris@439 16 #include "RDFImporter.h"
Chris@439 17
Chris@439 18 #include <map>
Chris@439 19 #include <vector>
Chris@439 20
Chris@439 21 #include <iostream>
Chris@439 22 #include <cmath>
Chris@439 23
Chris@439 24 #include "SimpleSPARQLQuery.h"
Chris@439 25
Chris@439 26 #include "base/ProgressReporter.h"
Chris@439 27 #include "base/RealTime.h"
Chris@439 28
Chris@439 29 #include "data/model/SparseOneDimensionalModel.h"
Chris@439 30 #include "data/model/SparseTimeValueModel.h"
Chris@439 31 #include "data/model/EditableDenseThreeDimensionalModel.h"
Chris@449 32 #include "data/model/NoteModel.h"
Chris@510 33 #include "data/model/TextModel.h"
Chris@449 34 #include "data/model/RegionModel.h"
Chris@499 35 #include "data/model/WaveFileModel.h"
Chris@499 36
Chris@499 37 #include "data/fileio/FileSource.h"
Chris@520 38 #include "data/fileio/CachedFile.h"
Chris@581 39 #include "data/fileio/FileFinder.h"
Chris@522 40
Chris@439 41 using std::cerr;
Chris@439 42 using std::endl;
Chris@439 43
Chris@439 44 class RDFImporterImpl
Chris@439 45 {
Chris@439 46 public:
Chris@439 47 RDFImporterImpl(QString url, int sampleRate);
Chris@439 48 virtual ~RDFImporterImpl();
Chris@490 49
Chris@490 50 void setSampleRate(int sampleRate) { m_sampleRate = sampleRate; }
Chris@439 51
Chris@439 52 bool isOK();
Chris@439 53 QString getErrorString() const;
Chris@439 54
Chris@439 55 std::vector<Model *> getDataModels(ProgressReporter *);
Chris@439 56
Chris@439 57 protected:
Chris@439 58 QString m_uristring;
Chris@439 59 QString m_errorString;
Chris@499 60 std::map<QString, Model *> m_audioModelMap;
Chris@439 61 int m_sampleRate;
Chris@439 62
Chris@520 63 static bool m_prefixesLoaded;
Chris@520 64 static void loadPrefixes(ProgressReporter *reporter);
Chris@520 65
Chris@499 66 void getDataModelsAudio(std::vector<Model *> &, ProgressReporter *);
Chris@440 67 void getDataModelsSparse(std::vector<Model *> &, ProgressReporter *);
Chris@440 68 void getDataModelsDense(std::vector<Model *> &, ProgressReporter *);
Chris@440 69
Chris@493 70 void getDenseModelTitle(Model *, QString, QString);
Chris@493 71
Chris@440 72 void getDenseFeatureProperties(QString featureUri,
Chris@440 73 int &sampleRate, int &windowLength,
Chris@440 74 int &hopSize, int &width, int &height);
Chris@440 75
Chris@449 76 void fillModel(Model *, long, long, bool, std::vector<float> &, QString);
Chris@439 77 };
Chris@439 78
Chris@520 79 bool RDFImporterImpl::m_prefixesLoaded = false;
Chris@439 80
Chris@439 81 QString
Chris@439 82 RDFImporter::getKnownExtensions()
Chris@439 83 {
Chris@439 84 return "*.rdf *.n3 *.ttl";
Chris@439 85 }
Chris@439 86
Chris@439 87 RDFImporter::RDFImporter(QString url, int sampleRate) :
Chris@439 88 m_d(new RDFImporterImpl(url, sampleRate))
Chris@439 89 {
Chris@439 90 }
Chris@439 91
Chris@439 92 RDFImporter::~RDFImporter()
Chris@439 93 {
Chris@439 94 delete m_d;
Chris@439 95 }
Chris@439 96
Chris@490 97 void
Chris@490 98 RDFImporter::setSampleRate(int sampleRate)
Chris@490 99 {
Chris@490 100 m_d->setSampleRate(sampleRate);
Chris@490 101 }
Chris@490 102
Chris@439 103 bool
Chris@439 104 RDFImporter::isOK()
Chris@439 105 {
Chris@439 106 return m_d->isOK();
Chris@439 107 }
Chris@439 108
Chris@439 109 QString
Chris@439 110 RDFImporter::getErrorString() const
Chris@439 111 {
Chris@439 112 return m_d->getErrorString();
Chris@439 113 }
Chris@439 114
Chris@439 115 std::vector<Model *>
Chris@439 116 RDFImporter::getDataModels(ProgressReporter *r)
Chris@439 117 {
Chris@439 118 return m_d->getDataModels(r);
Chris@439 119 }
Chris@439 120
Chris@439 121 RDFImporterImpl::RDFImporterImpl(QString uri, int sampleRate) :
Chris@439 122 m_uristring(uri),
Chris@439 123 m_sampleRate(sampleRate)
Chris@439 124 {
Chris@439 125 }
Chris@439 126
Chris@439 127 RDFImporterImpl::~RDFImporterImpl()
Chris@439 128 {
Chris@492 129 SimpleSPARQLQuery::closeSingleSource(m_uristring);
Chris@439 130 }
Chris@439 131
Chris@439 132 bool
Chris@439 133 RDFImporterImpl::isOK()
Chris@439 134 {
Chris@439 135 return (m_errorString == "");
Chris@439 136 }
Chris@439 137
Chris@439 138 QString
Chris@439 139 RDFImporterImpl::getErrorString() const
Chris@439 140 {
Chris@439 141 return m_errorString;
Chris@439 142 }
Chris@439 143
Chris@439 144 std::vector<Model *>
Chris@439 145 RDFImporterImpl::getDataModels(ProgressReporter *reporter)
Chris@439 146 {
Chris@520 147 loadPrefixes(reporter);
Chris@520 148
Chris@439 149 std::vector<Model *> models;
Chris@439 150
Chris@499 151 getDataModelsAudio(models, reporter);
Chris@499 152
Chris@490 153 if (m_sampleRate == 0) {
Chris@490 154 std::cerr << "RDFImporter::getDataModels: invalid sample rate" << std::endl;
Chris@490 155 return models;
Chris@490 156 }
Chris@490 157
Chris@508 158 QString error;
Chris@508 159
Chris@522 160 if (m_errorString != "") {
Chris@522 161 error = m_errorString;
Chris@522 162 }
Chris@508 163 m_errorString = "";
Chris@508 164
Chris@440 165 getDataModelsDense(models, reporter);
Chris@440 166
Chris@522 167 if (m_errorString != "") {
Chris@522 168 error = m_errorString;
Chris@522 169 }
Chris@440 170 m_errorString = "";
Chris@440 171
Chris@440 172 getDataModelsSparse(models, reporter);
Chris@440 173
Chris@522 174 if (m_errorString == "" && error != "") {
Chris@522 175 m_errorString = error;
Chris@522 176 }
Chris@440 177
Chris@440 178 return models;
Chris@440 179 }
Chris@440 180
Chris@440 181 void
Chris@499 182 RDFImporterImpl::getDataModelsAudio(std::vector<Model *> &models,
Chris@499 183 ProgressReporter *reporter)
Chris@499 184 {
Chris@499 185 SimpleSPARQLQuery query = SimpleSPARQLQuery
Chris@499 186 (SimpleSPARQLQuery::QueryFromSingleSource,
Chris@499 187 QString
Chris@499 188 (
Chris@499 189 " PREFIX mo: <http://purl.org/ontology/mo/> "
Chris@499 190 " SELECT ?signal ?source FROM <%1> "
Chris@499 191 " WHERE { ?signal a mo:Signal ; mo:available_as ?source } "
Chris@499 192 )
Chris@499 193 .arg(m_uristring));
Chris@499 194
Chris@499 195 SimpleSPARQLQuery::ResultList results = query.execute();
Chris@499 196
Chris@499 197 for (int i = 0; i < results.size(); ++i) {
Chris@499 198
Chris@499 199 QString signal = results[i]["signal"].value;
Chris@499 200 QString source = results[i]["source"].value;
Chris@499 201
Chris@522 202 FileSource *fs = new FileSource(source, reporter);
Chris@522 203 #ifdef NO_SV_GUI
Chris@522 204 if (!fs->isAvailable()) {
Chris@522 205 m_errorString = QString("Signal source \"%1\" is not available").arg(source);
Chris@522 206 delete fs;
Chris@522 207 continue;
Chris@522 208 }
Chris@522 209 #else
Chris@522 210 if (!fs->isAvailable()) {
Chris@522 211 FileFinder *ff = FileFinder::getInstance();
Chris@581 212 if (ff) {
Chris@581 213 QString path = ff->find(FileFinder::AudioFile,
Chris@581 214 fs->getLocation(),
Chris@581 215 m_uristring);
Chris@581 216 if (path != "") {
Chris@522 217 delete fs;
Chris@581 218 fs = new FileSource(path, reporter);
Chris@581 219 if (!fs->isAvailable()) {
Chris@581 220 delete fs;
Chris@581 221 m_errorString = QString("Signal source \"%1\" is not available").arg(source);
Chris@581 222 continue;
Chris@581 223 }
Chris@522 224 }
Chris@499 225 }
Chris@522 226 }
Chris@522 227 #endif
Chris@522 228
Chris@522 229 if (reporter) {
Chris@522 230 reporter->setMessage(RDFImporter::tr("Importing audio referenced in RDF..."));
Chris@522 231 }
Chris@522 232 fs->waitForData();
Chris@522 233 WaveFileModel *newModel = new WaveFileModel(*fs, m_sampleRate);
Chris@522 234 if (newModel->isOK()) {
Chris@522 235 std::cerr << "Successfully created wave file model from source at \"" << source.toStdString() << "\"" << std::endl;
Chris@522 236 models.push_back(newModel);
Chris@522 237 m_audioModelMap[signal] = newModel;
Chris@522 238 if (m_sampleRate == 0) {
Chris@522 239 m_sampleRate = newModel->getSampleRate();
Chris@499 240 }
Chris@508 241 } else {
Chris@522 242 m_errorString = QString("Failed to create wave file model from source at \"%1\"").arg(source);
Chris@522 243 delete newModel;
Chris@499 244 }
Chris@522 245 delete fs;
Chris@499 246 }
Chris@499 247 }
Chris@499 248
Chris@499 249 void
Chris@440 250 RDFImporterImpl::getDataModelsDense(std::vector<Model *> &models,
Chris@440 251 ProgressReporter *reporter)
Chris@440 252 {
Chris@499 253 if (reporter) {
Chris@499 254 reporter->setMessage(RDFImporter::tr("Importing dense signal data from RDF..."));
Chris@499 255 }
Chris@499 256
Chris@440 257 SimpleSPARQLQuery query = SimpleSPARQLQuery
Chris@489 258 (SimpleSPARQLQuery::QueryFromSingleSource,
Chris@480 259 QString
Chris@440 260 (
Chris@440 261 " PREFIX mo: <http://purl.org/ontology/mo/>"
Chris@440 262 " PREFIX af: <http://purl.org/ontology/af/>"
Chris@440 263
Chris@493 264 " SELECT ?feature ?feature_signal_type ?value "
Chris@440 265 " FROM <%1> "
Chris@440 266
Chris@440 267 " WHERE { "
Chris@440 268
Chris@493 269 " ?signal af:signal_feature ?feature . "
Chris@440 270
Chris@440 271 " ?feature a ?feature_signal_type ; "
Chris@440 272 " af:value ?value . "
Chris@440 273
Chris@440 274 " } "
Chris@440 275 )
Chris@440 276 .arg(m_uristring));
Chris@440 277
Chris@440 278 SimpleSPARQLQuery::ResultList results = query.execute();
Chris@440 279
Chris@440 280 if (!query.isOK()) {
Chris@440 281 m_errorString = query.getErrorString();
Chris@440 282 return;
Chris@440 283 }
Chris@440 284
Chris@440 285 if (query.wasCancelled()) {
Chris@440 286 m_errorString = "Query cancelled";
Chris@440 287 return;
Chris@440 288 }
Chris@440 289
Chris@440 290 for (int i = 0; i < results.size(); ++i) {
Chris@440 291
Chris@440 292 QString feature = results[i]["feature"].value;
Chris@440 293 QString type = results[i]["feature_signal_type"].value;
Chris@440 294 QString value = results[i]["value"].value;
Chris@440 295
Chris@440 296 int sampleRate = 0;
Chris@440 297 int windowLength = 0;
Chris@440 298 int hopSize = 0;
Chris@440 299 int width = 0;
Chris@440 300 int height = 0;
Chris@440 301 getDenseFeatureProperties
Chris@440 302 (feature, sampleRate, windowLength, hopSize, width, height);
Chris@440 303
Chris@440 304 if (sampleRate != 0 && sampleRate != m_sampleRate) {
Chris@440 305 cerr << "WARNING: Sample rate in dense feature description does not match our underlying rate -- using rate from feature description" << endl;
Chris@440 306 }
Chris@440 307 if (sampleRate == 0) sampleRate = m_sampleRate;
Chris@440 308
Chris@440 309 if (hopSize == 0) {
Chris@440 310 cerr << "WARNING: Dense feature description does not specify a hop size -- assuming 1" << endl;
Chris@440 311 hopSize = 1;
Chris@440 312 }
Chris@440 313
Chris@440 314 if (height == 0) {
Chris@440 315 cerr << "WARNING: Dense feature description does not specify feature signal dimensions -- assuming one-dimensional (height = 1)" << endl;
Chris@440 316 height = 1;
Chris@440 317 }
Chris@440 318
Chris@440 319 QStringList values = value.split(' ', QString::SkipEmptyParts);
Chris@440 320
Chris@440 321 if (values.empty()) {
Chris@440 322 cerr << "WARNING: Dense feature description does not specify any values!" << endl;
Chris@440 323 continue;
Chris@440 324 }
Chris@440 325
Chris@440 326 if (height == 1) {
Chris@440 327
Chris@440 328 SparseTimeValueModel *m = new SparseTimeValueModel
Chris@440 329 (sampleRate, hopSize, false);
Chris@440 330
Chris@440 331 for (int j = 0; j < values.size(); ++j) {
Chris@440 332 float f = values[j].toFloat();
Chris@440 333 SparseTimeValueModel::Point point(j * hopSize, f, "");
Chris@440 334 m->addPoint(point);
Chris@440 335 }
Chris@493 336
Chris@493 337 getDenseModelTitle(m, feature, type);
Chris@440 338
Chris@558 339 m->setRDFTypeURI(type);
Chris@558 340
Chris@440 341 models.push_back(m);
Chris@440 342
Chris@440 343 } else {
Chris@440 344
Chris@440 345 EditableDenseThreeDimensionalModel *m =
Chris@535 346 new EditableDenseThreeDimensionalModel
Chris@535 347 (sampleRate, hopSize, height,
Chris@535 348 EditableDenseThreeDimensionalModel::NoCompression, false);
Chris@440 349
Chris@440 350 EditableDenseThreeDimensionalModel::Column column;
Chris@440 351
Chris@440 352 int x = 0;
Chris@440 353
Chris@440 354 for (int j = 0; j < values.size(); ++j) {
Chris@440 355 if (j % height == 0 && !column.empty()) {
Chris@440 356 m->setColumn(x++, column);
Chris@440 357 column.clear();
Chris@440 358 }
Chris@440 359 column.push_back(values[j].toFloat());
Chris@440 360 }
Chris@440 361
Chris@440 362 if (!column.empty()) {
Chris@440 363 m->setColumn(x++, column);
Chris@440 364 }
Chris@440 365
Chris@493 366 getDenseModelTitle(m, feature, type);
Chris@493 367
Chris@558 368 m->setRDFTypeURI(type);
Chris@558 369
Chris@440 370 models.push_back(m);
Chris@440 371 }
Chris@440 372 }
Chris@440 373 }
Chris@440 374
Chris@440 375 void
Chris@493 376 RDFImporterImpl::getDenseModelTitle(Model *m,
Chris@493 377 QString featureUri,
Chris@493 378 QString featureTypeUri)
Chris@493 379 {
Chris@493 380 QString titleQuery = QString
Chris@493 381 (
Chris@493 382 " PREFIX dc: <http://purl.org/dc/elements/1.1/> "
Chris@493 383 " SELECT ?title "
Chris@493 384 " FROM <%1> "
Chris@493 385 " WHERE { "
Chris@493 386 " <%2> dc:title ?title . "
Chris@493 387 " } "
Chris@493 388 ).arg(m_uristring);
Chris@493 389
Chris@493 390 SimpleSPARQLQuery::Value v;
Chris@493 391
Chris@493 392 v = SimpleSPARQLQuery::singleResultQuery
Chris@493 393 (SimpleSPARQLQuery::QueryFromSingleSource,
Chris@493 394 titleQuery.arg(featureUri),
Chris@493 395 "title");
Chris@493 396
Chris@493 397 if (v.value != "") {
Chris@493 398 std::cerr << "RDFImporterImpl::getDenseModelTitle: Title (from signal) \"" << v.value.toStdString() << "\"" << std::endl;
Chris@493 399 m->setObjectName(v.value);
Chris@493 400 return;
Chris@493 401 }
Chris@493 402
Chris@493 403 v = SimpleSPARQLQuery::singleResultQuery
Chris@493 404 (SimpleSPARQLQuery::QueryFromSingleSource,
Chris@493 405 titleQuery.arg(featureTypeUri),
Chris@493 406 "title");
Chris@493 407
Chris@493 408 if (v.value != "") {
Chris@493 409 std::cerr << "RDFImporterImpl::getDenseModelTitle: Title (from signal type) \"" << v.value.toStdString() << "\"" << std::endl;
Chris@493 410 m->setObjectName(v.value);
Chris@493 411 return;
Chris@493 412 }
Chris@493 413
Chris@493 414 std::cerr << "RDFImporterImpl::getDenseModelTitle: No title available for feature <" << featureUri.toStdString() << ">" << std::endl;
Chris@493 415 }
Chris@493 416
Chris@493 417 void
Chris@440 418 RDFImporterImpl::getDenseFeatureProperties(QString featureUri,
Chris@440 419 int &sampleRate, int &windowLength,
Chris@440 420 int &hopSize, int &width, int &height)
Chris@440 421 {
Chris@489 422 SimpleSPARQLQuery::QueryType s = SimpleSPARQLQuery::QueryFromSingleSource;
Chris@489 423
Chris@440 424 QString dimensionsQuery
Chris@440 425 (
Chris@440 426 " PREFIX mo: <http://purl.org/ontology/mo/>"
Chris@440 427 " PREFIX af: <http://purl.org/ontology/af/>"
Chris@440 428
Chris@440 429 " SELECT ?dimensions "
Chris@440 430 " FROM <%1> "
Chris@440 431
Chris@440 432 " WHERE { "
Chris@440 433
Chris@440 434 " <%2> af:dimensions ?dimensions . "
Chris@440 435
Chris@440 436 " } "
Chris@440 437 );
Chris@440 438
Chris@440 439 SimpleSPARQLQuery::Value dimensionsValue =
Chris@489 440 SimpleSPARQLQuery::singleResultQuery
Chris@489 441 (s, dimensionsQuery.arg(m_uristring).arg(featureUri), "dimensions");
Chris@440 442
Chris@440 443 cerr << "Dimensions = \"" << dimensionsValue.value.toStdString() << "\""
Chris@440 444 << endl;
Chris@440 445
Chris@440 446 if (dimensionsValue.value != "") {
Chris@440 447 QStringList dl = dimensionsValue.value.split(" ");
Chris@440 448 if (dl.empty()) dl.push_back(dimensionsValue.value);
Chris@440 449 if (dl.size() > 0) height = dl[0].toInt();
Chris@440 450 if (dl.size() > 1) width = dl[1].toInt();
Chris@440 451 }
Chris@440 452
Chris@440 453 QString queryTemplate
Chris@440 454 (
Chris@440 455 " PREFIX mo: <http://purl.org/ontology/mo/>"
Chris@440 456 " PREFIX af: <http://purl.org/ontology/af/>"
Chris@440 457 " PREFIX tl: <http://purl.org/NET/c4dm/timeline.owl#>"
Chris@440 458
Chris@440 459 " SELECT ?%3 "
Chris@440 460 " FROM <%1> "
Chris@440 461
Chris@440 462 " WHERE { "
Chris@440 463
Chris@440 464 " <%2> mo:time ?time . "
Chris@440 465
Chris@440 466 " ?time a tl:Interval ; "
Chris@440 467 " tl:onTimeLine ?timeline . "
Chris@440 468
Chris@440 469 " ?map tl:rangeTimeLine ?timeline . "
Chris@440 470
Chris@440 471 " ?map tl:%3 ?%3 . "
Chris@440 472
Chris@440 473 " } "
Chris@440 474 );
Chris@440 475
Chris@440 476 // Another laborious workaround for rasqal's failure to handle
Chris@440 477 // multiple optionals properly
Chris@440 478
Chris@440 479 SimpleSPARQLQuery::Value srValue =
Chris@489 480 SimpleSPARQLQuery::singleResultQuery(s,
Chris@480 481 queryTemplate
Chris@440 482 .arg(m_uristring).arg(featureUri)
Chris@440 483 .arg("sampleRate"),
Chris@440 484 "sampleRate");
Chris@440 485 if (srValue.value != "") {
Chris@440 486 sampleRate = srValue.value.toInt();
Chris@440 487 }
Chris@440 488
Chris@440 489 SimpleSPARQLQuery::Value hopValue =
Chris@489 490 SimpleSPARQLQuery::singleResultQuery(s,
Chris@480 491 queryTemplate
Chris@440 492 .arg(m_uristring).arg(featureUri)
Chris@440 493 .arg("hopSize"),
Chris@440 494 "hopSize");
Chris@440 495 if (srValue.value != "") {
Chris@440 496 hopSize = hopValue.value.toInt();
Chris@440 497 }
Chris@440 498
Chris@440 499 SimpleSPARQLQuery::Value winValue =
Chris@489 500 SimpleSPARQLQuery::singleResultQuery(s,
Chris@480 501 queryTemplate
Chris@440 502 .arg(m_uristring).arg(featureUri)
Chris@440 503 .arg("windowLength"),
Chris@440 504 "windowLength");
Chris@440 505 if (winValue.value != "") {
Chris@440 506 windowLength = winValue.value.toInt();
Chris@440 507 }
Chris@440 508
Chris@440 509 cerr << "sr = " << sampleRate << ", hop = " << hopSize << ", win = " << windowLength << endl;
Chris@440 510 }
Chris@440 511
Chris@440 512 void
Chris@440 513 RDFImporterImpl::getDataModelsSparse(std::vector<Model *> &models,
Chris@440 514 ProgressReporter *reporter)
Chris@440 515 {
Chris@499 516 if (reporter) {
Chris@499 517 reporter->setMessage(RDFImporter::tr("Importing event data from RDF..."));
Chris@499 518 }
Chris@499 519
Chris@489 520 SimpleSPARQLQuery::QueryType s = SimpleSPARQLQuery::QueryFromSingleSource;
Chris@489 521
Chris@439 522 // Our query is intended to retrieve every thing that has a time,
Chris@439 523 // and every feature type and value associated with a thing that
Chris@439 524 // has a time.
Chris@439 525
Chris@439 526 // We will then need to refine this big bag of results into a set
Chris@439 527 // of data models.
Chris@439 528
Chris@439 529 // Results that have different source signals should go into
Chris@439 530 // different models.
Chris@439 531
Chris@439 532 // Results that have different feature types should go into
Chris@439 533 // different models.
Chris@439 534
Chris@439 535 // Results that are sparse should go into different models from
Chris@439 536 // those that are dense (we need to examine the timestamps to
Chris@439 537 // establish this -- if the timestamps are regular, the results
Chris@439 538 // are dense -- so we can't do it as we go along, only after
Chris@439 539 // collecting all results).
Chris@439 540
Chris@439 541 // Timed things that have features associated with them should not
Chris@439 542 // appear directly in any model -- their features should appear
Chris@439 543 // instead -- and these should be different models from those used
Chris@439 544 // for timed things that do not have features.
Chris@439 545
Chris@439 546 // As we load the results, we'll push them into a partially
Chris@439 547 // structured container that maps from source signal (URI as
Chris@439 548 // string) -> feature type (likewise) -> time -> list of values.
Chris@439 549 // If the source signal or feature type is unavailable, the empty
Chris@439 550 // string will do.
Chris@439 551
Chris@449 552 QString prefixes = QString(
Chris@439 553 " PREFIX event: <http://purl.org/NET/c4dm/event.owl#>"
Chris@449 554 " PREFIX tl: <http://purl.org/NET/c4dm/timeline.owl#>"
Chris@439 555 " PREFIX mo: <http://purl.org/ontology/mo/>"
Chris@439 556 " PREFIX af: <http://purl.org/ontology/af/>"
Chris@449 557 " PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>"
Chris@449 558 );
Chris@439 559
Chris@449 560 QString queryString = prefixes + QString(
Chris@449 561
Chris@499 562 " SELECT ?signal ?timed_thing ?event_type ?value"
Chris@439 563 " FROM <%1>"
Chris@439 564
Chris@439 565 " WHERE {"
Chris@440 566
Chris@440 567 " ?signal a mo:Signal ."
Chris@440 568
Chris@439 569 " ?signal mo:time ?interval ."
Chris@449 570 " ?interval tl:onTimeLine ?tl ."
Chris@449 571 " ?time tl:onTimeLine ?tl ."
Chris@449 572 " ?timed_thing event:time ?time ."
Chris@440 573 " ?timed_thing a ?event_type ."
Chris@440 574
Chris@439 575 " OPTIONAL {"
Chris@440 576 " ?timed_thing af:feature ?value"
Chris@439 577 " }"
Chris@439 578 " }"
Chris@439 579
Chris@439 580 ).arg(m_uristring);
Chris@439 581
Chris@449 582 QString timeQueryString = prefixes + QString(
Chris@449 583
Chris@449 584 " SELECT ?time FROM <%1> "
Chris@449 585 " WHERE { "
Chris@449 586 " <%2> event:time ?t . "
Chris@449 587 " ?t tl:at ?time . "
Chris@449 588 " } "
Chris@449 589
Chris@449 590 ).arg(m_uristring);
Chris@449 591
Chris@449 592 QString rangeQueryString = prefixes + QString(
Chris@449 593
Chris@449 594 " SELECT ?time ?duration FROM <%1> "
Chris@449 595 " WHERE { "
Chris@449 596 " <%2> event:time ?t . "
Chris@449 597 " ?t tl:beginsAt ?time . "
Chris@449 598 " ?t tl:duration ?duration . "
Chris@449 599 " } "
Chris@449 600
Chris@449 601 ).arg(m_uristring);
Chris@449 602
Chris@449 603 QString labelQueryString = prefixes + QString(
Chris@449 604
Chris@449 605 " SELECT ?label FROM <%1> "
Chris@449 606 " WHERE { "
Chris@449 607 " <%2> rdfs:label ?label . "
Chris@449 608 " } "
Chris@449 609
Chris@449 610 ).arg(m_uristring);
Chris@449 611
Chris@510 612 QString textQueryString = prefixes + QString(
Chris@510 613
Chris@510 614 " SELECT ?label FROM <%1> "
Chris@510 615 " WHERE { "
Chris@510 616 " <%2> af:text ?label . "
Chris@510 617 " } "
Chris@510 618
Chris@510 619 ).arg(m_uristring);
Chris@510 620
Chris@489 621 SimpleSPARQLQuery query(s, queryString);
Chris@439 622 query.setProgressReporter(reporter);
Chris@439 623
Chris@500 624 // cerr << "Query will be: " << queryString.toStdString() << endl;
Chris@439 625
Chris@439 626 SimpleSPARQLQuery::ResultList results = query.execute();
Chris@439 627
Chris@439 628 if (!query.isOK()) {
Chris@439 629 m_errorString = query.getErrorString();
Chris@440 630 return;
Chris@439 631 }
Chris@439 632
Chris@439 633 if (query.wasCancelled()) {
Chris@439 634 m_errorString = "Query cancelled";
Chris@440 635 return;
Chris@439 636 }
Chris@439 637
Chris@449 638 /*
Chris@449 639 This function is now only used for sparse data (for dense data
Chris@449 640 we would be in getDataModelsDense instead).
Chris@449 641
Chris@449 642 For sparse data, the determining factors in deciding what model
Chris@449 643 to use are: Do the features have values? and Do the features
Chris@449 644 have duration?
Chris@449 645
Chris@449 646 We can run through the results and check off whether we find
Chris@449 647 values and duration for each of the source+type keys, and then
Chris@449 648 run through the source+type keys pushing each of the results
Chris@449 649 into a suitable model.
Chris@449 650
Chris@449 651 Unfortunately, at this point we do not yet have any actual
Chris@449 652 timing data (time/duration) -- just the time URI.
Chris@449 653
Chris@449 654 What we _could_ do is to create one of each type of model at the
Chris@449 655 start, for each of the source+type keys, and then push each
Chris@449 656 feature into the relevant model depending on what we find out
Chris@449 657 about it. Then return only non-empty models.
Chris@449 658 */
Chris@449 659
Chris@449 660 // Map from signal source to event type to dimensionality to
Chris@449 661 // presence of duration to model ptr. Whee!
Chris@449 662 std::map<QString, std::map<QString, std::map<int, std::map<bool, Model *> > > >
Chris@449 663 modelMap;
Chris@449 664
Chris@439 665 for (int i = 0; i < results.size(); ++i) {
Chris@439 666
Chris@499 667 if (i % 4 == 0) {
Chris@499 668 if (reporter) reporter->setProgress(i/4);
Chris@499 669 }
Chris@499 670
Chris@499 671 QString source = results[i]["signal"].value;
Chris@449 672 QString type = results[i]["event_type"].value;
Chris@449 673 QString thinguri = results[i]["timed_thing"].value;
Chris@449 674
Chris@449 675 RealTime time;
Chris@449 676 RealTime duration;
Chris@439 677
Chris@449 678 bool haveTime = false;
Chris@449 679 bool haveDuration = false;
Chris@439 680
Chris@510 681 QString label = "";
Chris@510 682 bool text = (type.contains("Text") || type.contains("text")); // Ha, ha
Chris@510 683
Chris@510 684 if (text) {
Chris@510 685 label = SimpleSPARQLQuery::singleResultQuery
Chris@510 686 (s, textQueryString.arg(thinguri), "label").value;
Chris@510 687 }
Chris@510 688
Chris@510 689 if (label == "") {
Chris@510 690 label = SimpleSPARQLQuery::singleResultQuery
Chris@510 691 (s, labelQueryString.arg(thinguri), "label").value;
Chris@510 692 }
Chris@449 693
Chris@489 694 SimpleSPARQLQuery rangeQuery(s, rangeQueryString.arg(thinguri));
Chris@450 695 SimpleSPARQLQuery::ResultList rangeResults = rangeQuery.execute();
Chris@450 696 if (!rangeResults.empty()) {
Chris@450 697 // std::cerr << rangeResults.size() << " range results" << std::endl;
Chris@450 698 time = RealTime::fromXsdDuration
Chris@450 699 (rangeResults[0]["time"].value.toStdString());
Chris@450 700 duration = RealTime::fromXsdDuration
Chris@450 701 (rangeResults[0]["duration"].value.toStdString());
Chris@450 702 // std::cerr << "duration string " << rangeResults[0]["duration"].value.toStdString() << std::endl;
Chris@449 703 haveTime = true;
Chris@450 704 haveDuration = true;
Chris@449 705 } else {
Chris@450 706 QString timestring = SimpleSPARQLQuery::singleResultQuery
Chris@489 707 (s, timeQueryString.arg(thinguri), "time").value;
Chris@520 708 // std::cerr << "timestring = " << timestring.toStdString() << std::endl;
Chris@450 709 if (timestring != "") {
Chris@450 710 time = RealTime::fromXsdDuration(timestring.toStdString());
Chris@449 711 haveTime = true;
Chris@449 712 }
Chris@449 713 }
Chris@439 714
Chris@439 715 QString valuestring = results[i]["value"].value;
Chris@449 716 std::vector<float> values;
Chris@449 717
Chris@439 718 if (valuestring != "") {
Chris@449 719 QStringList vsl = valuestring.split(" ", QString::SkipEmptyParts);
Chris@449 720 for (int j = 0; j < vsl.size(); ++j) {
Chris@449 721 bool success = false;
Chris@449 722 float v = vsl[j].toFloat(&success);
Chris@449 723 if (success) values.push_back(v);
Chris@449 724 }
Chris@439 725 }
Chris@439 726
Chris@449 727 int dimensions = 1;
Chris@449 728 if (values.size() == 1) dimensions = 2;
Chris@449 729 else if (values.size() > 1) dimensions = 3;
Chris@449 730
Chris@449 731 Model *model = 0;
Chris@449 732
Chris@449 733 if (modelMap[source][type][dimensions].find(haveDuration) ==
Chris@449 734 modelMap[source][type][dimensions].end()) {
Chris@449 735
Chris@449 736 /*
Chris@449 737 std::cerr << "Creating new model: source = " << source.toStdString()
Chris@449 738 << ", type = " << type.toStdString() << ", dimensions = "
Chris@449 739 << dimensions << ", haveDuration = " << haveDuration
Chris@449 740 << ", time = " << time << ", duration = " << duration
Chris@449 741 << std::endl;
Chris@449 742 */
Chris@449 743
Chris@449 744 if (!haveDuration) {
Chris@449 745
Chris@449 746 if (dimensions == 1) {
Chris@449 747
Chris@510 748 if (text) {
Chris@510 749
Chris@510 750 model = new TextModel(m_sampleRate, 1, false);
Chris@510 751
Chris@510 752 } else {
Chris@510 753
Chris@510 754 model = new SparseOneDimensionalModel(m_sampleRate, 1, false);
Chris@510 755 }
Chris@449 756
Chris@449 757 } else if (dimensions == 2) {
Chris@449 758
Chris@510 759 if (text) {
Chris@510 760
Chris@510 761 model = new TextModel(m_sampleRate, 1, false);
Chris@510 762
Chris@510 763 } else {
Chris@510 764
Chris@510 765 model = new SparseTimeValueModel(m_sampleRate, 1, false);
Chris@510 766 }
Chris@449 767
Chris@449 768 } else {
Chris@449 769
Chris@449 770 // We don't have a three-dimensional sparse model,
Chris@449 771 // so use a note model. We do have some logic (in
Chris@449 772 // extractStructure below) for guessing whether
Chris@449 773 // this should after all have been a dense model,
Chris@449 774 // but it's hard to apply it because we don't have
Chris@449 775 // all the necessary timing data yet... hmm
Chris@449 776
Chris@449 777 model = new NoteModel(m_sampleRate, 1, false);
Chris@449 778 }
Chris@449 779
Chris@449 780 } else { // haveDuration
Chris@449 781
Chris@449 782 if (dimensions == 1 || dimensions == 2) {
Chris@449 783
Chris@449 784 // If our units are frequency or midi pitch, we
Chris@449 785 // should be using a note model... hm
Chris@449 786
Chris@449 787 model = new RegionModel(m_sampleRate, 1, false);
Chris@449 788
Chris@449 789 } else {
Chris@449 790
Chris@449 791 // We don't have a three-dimensional sparse model,
Chris@449 792 // so use a note model. We do have some logic (in
Chris@449 793 // extractStructure below) for guessing whether
Chris@449 794 // this should after all have been a dense model,
Chris@449 795 // but it's hard to apply it because we don't have
Chris@449 796 // all the necessary timing data yet... hmm
Chris@449 797
Chris@449 798 model = new NoteModel(m_sampleRate, 1, false);
Chris@449 799 }
Chris@449 800 }
Chris@449 801
Chris@558 802 model->setRDFTypeURI(type);
Chris@558 803
Chris@499 804 if (m_audioModelMap.find(source) != m_audioModelMap.end()) {
Chris@499 805 std::cerr << "source model for " << model << " is " << m_audioModelMap[source] << std::endl;
Chris@499 806 model->setSourceModel(m_audioModelMap[source]);
Chris@499 807 }
Chris@499 808
Chris@493 809 QString titleQuery = QString
Chris@493 810 (
Chris@493 811 " PREFIX dc: <http://purl.org/dc/elements/1.1/> "
Chris@493 812 " SELECT ?title "
Chris@493 813 " FROM <%1> "
Chris@493 814 " WHERE { "
Chris@493 815 " <%2> dc:title ?title . "
Chris@493 816 " } "
Chris@493 817 ).arg(m_uristring).arg(type);
Chris@493 818 QString title = SimpleSPARQLQuery::singleResultQuery
Chris@493 819 (s, titleQuery, "title").value;
Chris@493 820 if (title != "") model->setObjectName(title);
Chris@493 821
Chris@449 822 modelMap[source][type][dimensions][haveDuration] = model;
Chris@449 823 models.push_back(model);
Chris@449 824 }
Chris@449 825
Chris@449 826 model = modelMap[source][type][dimensions][haveDuration];
Chris@449 827
Chris@449 828 if (model) {
Chris@449 829 long ftime = RealTime::realTime2Frame(time, m_sampleRate);
Chris@449 830 long fduration = RealTime::realTime2Frame(duration, m_sampleRate);
Chris@449 831 fillModel(model, ftime, fduration, haveDuration, values, label);
Chris@439 832 }
Chris@439 833 }
Chris@439 834 }
Chris@439 835
Chris@439 836 void
Chris@449 837 RDFImporterImpl::fillModel(Model *model,
Chris@449 838 long ftime,
Chris@449 839 long fduration,
Chris@449 840 bool haveDuration,
Chris@449 841 std::vector<float> &values,
Chris@449 842 QString label)
Chris@449 843 {
Chris@493 844 // std::cerr << "RDFImporterImpl::fillModel: adding point at frame " << ftime << std::endl;
Chris@492 845
Chris@449 846 SparseOneDimensionalModel *sodm =
Chris@449 847 dynamic_cast<SparseOneDimensionalModel *>(model);
Chris@449 848 if (sodm) {
Chris@449 849 SparseOneDimensionalModel::Point point(ftime, label);
Chris@449 850 sodm->addPoint(point);
Chris@449 851 return;
Chris@449 852 }
Chris@449 853
Chris@510 854 TextModel *tm =
Chris@510 855 dynamic_cast<TextModel *>(model);
Chris@510 856 if (tm) {
Chris@510 857 TextModel::Point point
Chris@510 858 (ftime,
Chris@510 859 values.empty() ? 0.5f : values[0] < 0.f ? 0.f : values[0] > 1.f ? 1.f : values[0], // I was young and feckless once too
Chris@510 860 label);
Chris@510 861 tm->addPoint(point);
Chris@510 862 return;
Chris@510 863 }
Chris@510 864
Chris@449 865 SparseTimeValueModel *stvm =
Chris@449 866 dynamic_cast<SparseTimeValueModel *>(model);
Chris@449 867 if (stvm) {
Chris@449 868 SparseTimeValueModel::Point point
Chris@449 869 (ftime, values.empty() ? 0.f : values[0], label);
Chris@449 870 stvm->addPoint(point);
Chris@449 871 return;
Chris@449 872 }
Chris@449 873
Chris@449 874 NoteModel *nm =
Chris@449 875 dynamic_cast<NoteModel *>(model);
Chris@449 876 if (nm) {
Chris@449 877 if (haveDuration) {
Chris@449 878 float value = 0.f, level = 1.f;
Chris@449 879 if (!values.empty()) {
Chris@449 880 value = values[0];
Chris@449 881 if (values.size() > 1) {
Chris@449 882 level = values[1];
Chris@449 883 }
Chris@449 884 }
Chris@449 885 NoteModel::Point point(ftime, value, fduration, level, label);
Chris@449 886 nm->addPoint(point);
Chris@449 887 } else {
Chris@449 888 float value = 0.f, duration = 1.f, level = 1.f;
Chris@449 889 if (!values.empty()) {
Chris@449 890 value = values[0];
Chris@449 891 if (values.size() > 1) {
Chris@449 892 duration = values[1];
Chris@449 893 if (values.size() > 2) {
Chris@449 894 level = values[2];
Chris@449 895 }
Chris@449 896 }
Chris@449 897 }
Chris@449 898 NoteModel::Point point(ftime, value, duration, level, label);
Chris@449 899 nm->addPoint(point);
Chris@449 900 }
Chris@449 901 return;
Chris@449 902 }
Chris@449 903
Chris@449 904 RegionModel *rm =
Chris@449 905 dynamic_cast<RegionModel *>(model);
Chris@449 906 if (rm) {
Chris@449 907 if (haveDuration) {
Chris@449 908 RegionModel::Point point
Chris@449 909 (ftime, values.empty() ? 0.f : values[0], fduration, label);
Chris@449 910 rm->addPoint(point);
Chris@449 911 } else {
Chris@449 912 // This won't actually happen -- we only create region models
Chris@449 913 // if we do have duration -- but just for completeness
Chris@449 914 float value = 0.f, duration = 1.f;
Chris@449 915 if (!values.empty()) {
Chris@449 916 value = values[0];
Chris@449 917 if (values.size() > 1) {
Chris@449 918 duration = values[1];
Chris@449 919 }
Chris@449 920 }
Chris@449 921 RegionModel::Point point(ftime, value, duration, label);
Chris@449 922 rm->addPoint(point);
Chris@449 923 }
Chris@449 924 return;
Chris@449 925 }
Chris@449 926
Chris@449 927 std::cerr << "WARNING: RDFImporterImpl::fillModel: Unknown or unexpected model type" << std::endl;
Chris@449 928 return;
Chris@449 929 }
Chris@449 930
Chris@490 931 RDFImporter::RDFDocumentType
Chris@490 932 RDFImporter::identifyDocumentType(QString url)
Chris@490 933 {
Chris@490 934 bool haveAudio = false;
Chris@490 935 bool haveAnnotations = false;
Chris@449 936
Chris@499 937 // This query is not expected to return any values, but if it
Chris@499 938 // executes successfully (leaving no error in the error string)
Chris@499 939 // then we know we have RDF
Chris@499 940 SimpleSPARQLQuery q(SimpleSPARQLQuery::QueryFromSingleSource,
Chris@499 941 QString(" SELECT ?x FROM <%1> WHERE { ?x <y> <z> } ")
Chris@499 942 .arg(url));
Chris@499 943
Chris@499 944 SimpleSPARQLQuery::ResultList r = q.execute();
Chris@499 945 if (!q.isOK()) {
Chris@542 946 SimpleSPARQLQuery::closeSingleSource(url);
Chris@499 947 return NotRDF;
Chris@499 948 }
Chris@499 949
Chris@490 950 SimpleSPARQLQuery::Value value =
Chris@490 951 SimpleSPARQLQuery::singleResultQuery
Chris@490 952 (SimpleSPARQLQuery::QueryFromSingleSource,
Chris@490 953 QString
Chris@490 954 (" PREFIX mo: <http://purl.org/ontology/mo/> "
Chris@490 955 " SELECT ?url FROM <%1> "
Chris@490 956 " WHERE { ?signal a mo:Signal ; mo:available_as ?url } "
Chris@490 957 ).arg(url),
Chris@490 958 "url");
Chris@490 959
Chris@490 960 if (value.type == SimpleSPARQLQuery::URIValue) {
Chris@490 961 haveAudio = true;
Chris@490 962 }
Chris@490 963
Chris@490 964 value =
Chris@490 965 SimpleSPARQLQuery::singleResultQuery
Chris@490 966 (SimpleSPARQLQuery::QueryFromSingleSource,
Chris@490 967 QString
Chris@490 968 (" PREFIX event: <http://purl.org/NET/c4dm/event.owl#> "
Chris@490 969 " SELECT ?thing FROM <%1> "
Chris@490 970 " WHERE { ?thing event:time ?time } "
Chris@490 971 ).arg(url),
Chris@490 972 "thing");
Chris@490 973
Chris@490 974 if (value.type == SimpleSPARQLQuery::URIValue) {
Chris@490 975 haveAnnotations = true;
Chris@490 976 }
Chris@490 977
Chris@490 978 if (!haveAnnotations) {
Chris@490 979
Chris@490 980 value =
Chris@490 981 SimpleSPARQLQuery::singleResultQuery
Chris@490 982 (SimpleSPARQLQuery::QueryFromSingleSource,
Chris@490 983 QString
Chris@490 984 (" PREFIX af: <http://purl.org/ontology/af/> "
Chris@490 985 " SELECT ?thing FROM <%1> "
Chris@490 986 " WHERE { ?signal af:signal_feature ?thing } "
Chris@490 987 ).arg(url),
Chris@490 988 "thing");
Chris@490 989
Chris@490 990 if (value.type == SimpleSPARQLQuery::URIValue) {
Chris@490 991 haveAnnotations = true;
Chris@490 992 }
Chris@490 993 }
Chris@490 994
Chris@542 995 SimpleSPARQLQuery::closeSingleSource(url);
Chris@542 996
Chris@490 997 if (haveAudio) {
Chris@490 998 if (haveAnnotations) {
Chris@490 999 return AudioRefAndAnnotations;
Chris@490 1000 } else {
Chris@490 1001 return AudioRef;
Chris@490 1002 }
Chris@490 1003 } else {
Chris@490 1004 if (haveAnnotations) {
Chris@490 1005 return Annotations;
Chris@490 1006 } else {
Chris@499 1007 return OtherRDFDocument;
Chris@490 1008 }
Chris@490 1009 }
Chris@492 1010
Chris@542 1011 return OtherRDFDocument;
Chris@490 1012 }
Chris@490 1013
Chris@520 1014 void
Chris@520 1015 RDFImporterImpl::loadPrefixes(ProgressReporter *reporter)
Chris@520 1016 {
Chris@520 1017 return;
Chris@520 1018 //!!!
Chris@520 1019 if (m_prefixesLoaded) return;
Chris@520 1020 const char *prefixes[] = {
Chris@520 1021 "http://purl.org/NET/c4dm/event.owl",
Chris@520 1022 "http://purl.org/NET/c4dm/timeline.owl",
Chris@520 1023 "http://purl.org/ontology/mo/",
Chris@520 1024 "http://purl.org/ontology/af/",
Chris@520 1025 "http://www.w3.org/2000/01/rdf-schema",
Chris@520 1026 "http://purl.org/dc/elements/1.1/",
Chris@520 1027 };
Chris@520 1028 for (size_t i = 0; i < sizeof(prefixes)/sizeof(prefixes[0]); ++i) {
Chris@520 1029 CachedFile cf(prefixes[i], reporter, "application/rdf+xml");
Chris@520 1030 if (!cf.isOK()) continue;
Chris@520 1031 SimpleSPARQLQuery::addSourceToModel
Chris@520 1032 (QUrl::fromLocalFile(cf.getLocalFilename()).toString());
Chris@520 1033 }
Chris@520 1034 m_prefixesLoaded = true;
Chris@520 1035 }