annotate rdf/RDFImporter.cpp @ 555:8accc7969c1c

* Some steps to avoid backward seeks in MatrixFile in common use cases
author Chris Cannam
date Mon, 09 Feb 2009 11:38:08 +0000
parents 1ddab154fb9a
children 1d7ebc05157e
rev   line source
Chris@439 1 /* -*- c-basic-offset: 4 indent-tabs-mode: nil -*- vi:set ts=8 sts=4 sw=4: */
Chris@439 2
Chris@439 3 /*
Chris@439 4 Sonic Visualiser
Chris@439 5 An audio file viewer and annotation editor.
Chris@439 6 Centre for Digital Music, Queen Mary, University of London.
Chris@439 7 This file copyright 2008 QMUL.
Chris@439 8
Chris@439 9 This program is free software; you can redistribute it and/or
Chris@439 10 modify it under the terms of the GNU General Public License as
Chris@439 11 published by the Free Software Foundation; either version 2 of the
Chris@439 12 License, or (at your option) any later version. See the file
Chris@439 13 COPYING included with this distribution for more information.
Chris@439 14 */
Chris@439 15
Chris@439 16 #include "RDFImporter.h"
Chris@439 17
Chris@439 18 #include <map>
Chris@439 19 #include <vector>
Chris@439 20
Chris@439 21 #include <iostream>
Chris@439 22 #include <cmath>
Chris@439 23
Chris@439 24 #include "SimpleSPARQLQuery.h"
Chris@439 25
Chris@439 26 #include "base/ProgressReporter.h"
Chris@439 27 #include "base/RealTime.h"
Chris@439 28
Chris@439 29 #include "data/model/SparseOneDimensionalModel.h"
Chris@439 30 #include "data/model/SparseTimeValueModel.h"
Chris@439 31 #include "data/model/EditableDenseThreeDimensionalModel.h"
Chris@449 32 #include "data/model/NoteModel.h"
Chris@510 33 #include "data/model/TextModel.h"
Chris@449 34 #include "data/model/RegionModel.h"
Chris@499 35 #include "data/model/WaveFileModel.h"
Chris@499 36
Chris@499 37 #include "data/fileio/FileSource.h"
Chris@520 38 #include "data/fileio/CachedFile.h"
Chris@439 39
Chris@522 40 #ifndef NO_SV_GUI
Chris@522 41 #include "widgets/FileFinder.h"
Chris@522 42 #endif
Chris@522 43
Chris@439 44 using std::cerr;
Chris@439 45 using std::endl;
Chris@439 46
Chris@439 47 class RDFImporterImpl
Chris@439 48 {
Chris@439 49 public:
Chris@439 50 RDFImporterImpl(QString url, int sampleRate);
Chris@439 51 virtual ~RDFImporterImpl();
Chris@490 52
Chris@490 53 void setSampleRate(int sampleRate) { m_sampleRate = sampleRate; }
Chris@439 54
Chris@439 55 bool isOK();
Chris@439 56 QString getErrorString() const;
Chris@439 57
Chris@439 58 std::vector<Model *> getDataModels(ProgressReporter *);
Chris@439 59
Chris@439 60 protected:
Chris@439 61 QString m_uristring;
Chris@439 62 QString m_errorString;
Chris@499 63 std::map<QString, Model *> m_audioModelMap;
Chris@439 64 int m_sampleRate;
Chris@439 65
Chris@520 66 static bool m_prefixesLoaded;
Chris@520 67 static void loadPrefixes(ProgressReporter *reporter);
Chris@520 68
Chris@499 69 void getDataModelsAudio(std::vector<Model *> &, ProgressReporter *);
Chris@440 70 void getDataModelsSparse(std::vector<Model *> &, ProgressReporter *);
Chris@440 71 void getDataModelsDense(std::vector<Model *> &, ProgressReporter *);
Chris@440 72
Chris@493 73 void getDenseModelTitle(Model *, QString, QString);
Chris@493 74
Chris@440 75 void getDenseFeatureProperties(QString featureUri,
Chris@440 76 int &sampleRate, int &windowLength,
Chris@440 77 int &hopSize, int &width, int &height);
Chris@440 78
Chris@449 79 void fillModel(Model *, long, long, bool, std::vector<float> &, QString);
Chris@439 80 };
Chris@439 81
Chris@520 82 bool RDFImporterImpl::m_prefixesLoaded = false;
Chris@439 83
Chris@439 84 QString
Chris@439 85 RDFImporter::getKnownExtensions()
Chris@439 86 {
Chris@439 87 return "*.rdf *.n3 *.ttl";
Chris@439 88 }
Chris@439 89
Chris@439 90 RDFImporter::RDFImporter(QString url, int sampleRate) :
Chris@439 91 m_d(new RDFImporterImpl(url, sampleRate))
Chris@439 92 {
Chris@439 93 }
Chris@439 94
Chris@439 95 RDFImporter::~RDFImporter()
Chris@439 96 {
Chris@439 97 delete m_d;
Chris@439 98 }
Chris@439 99
Chris@490 100 void
Chris@490 101 RDFImporter::setSampleRate(int sampleRate)
Chris@490 102 {
Chris@490 103 m_d->setSampleRate(sampleRate);
Chris@490 104 }
Chris@490 105
Chris@439 106 bool
Chris@439 107 RDFImporter::isOK()
Chris@439 108 {
Chris@439 109 return m_d->isOK();
Chris@439 110 }
Chris@439 111
Chris@439 112 QString
Chris@439 113 RDFImporter::getErrorString() const
Chris@439 114 {
Chris@439 115 return m_d->getErrorString();
Chris@439 116 }
Chris@439 117
Chris@439 118 std::vector<Model *>
Chris@439 119 RDFImporter::getDataModels(ProgressReporter *r)
Chris@439 120 {
Chris@439 121 return m_d->getDataModels(r);
Chris@439 122 }
Chris@439 123
Chris@439 124 RDFImporterImpl::RDFImporterImpl(QString uri, int sampleRate) :
Chris@439 125 m_uristring(uri),
Chris@439 126 m_sampleRate(sampleRate)
Chris@439 127 {
Chris@439 128 }
Chris@439 129
Chris@439 130 RDFImporterImpl::~RDFImporterImpl()
Chris@439 131 {
Chris@492 132 SimpleSPARQLQuery::closeSingleSource(m_uristring);
Chris@439 133 }
Chris@439 134
Chris@439 135 bool
Chris@439 136 RDFImporterImpl::isOK()
Chris@439 137 {
Chris@439 138 return (m_errorString == "");
Chris@439 139 }
Chris@439 140
Chris@439 141 QString
Chris@439 142 RDFImporterImpl::getErrorString() const
Chris@439 143 {
Chris@439 144 return m_errorString;
Chris@439 145 }
Chris@439 146
Chris@439 147 std::vector<Model *>
Chris@439 148 RDFImporterImpl::getDataModels(ProgressReporter *reporter)
Chris@439 149 {
Chris@520 150 loadPrefixes(reporter);
Chris@520 151
Chris@439 152 std::vector<Model *> models;
Chris@439 153
Chris@499 154 getDataModelsAudio(models, reporter);
Chris@499 155
Chris@490 156 if (m_sampleRate == 0) {
Chris@490 157 std::cerr << "RDFImporter::getDataModels: invalid sample rate" << std::endl;
Chris@490 158 return models;
Chris@490 159 }
Chris@490 160
Chris@508 161 QString error;
Chris@508 162
Chris@522 163 if (m_errorString != "") {
Chris@522 164 error = m_errorString;
Chris@522 165 }
Chris@508 166 m_errorString = "";
Chris@508 167
Chris@440 168 getDataModelsDense(models, reporter);
Chris@440 169
Chris@522 170 if (m_errorString != "") {
Chris@522 171 error = m_errorString;
Chris@522 172 }
Chris@440 173 m_errorString = "";
Chris@440 174
Chris@440 175 getDataModelsSparse(models, reporter);
Chris@440 176
Chris@522 177 if (m_errorString == "" && error != "") {
Chris@522 178 m_errorString = error;
Chris@522 179 }
Chris@440 180
Chris@440 181 return models;
Chris@440 182 }
Chris@440 183
Chris@440 184 void
Chris@499 185 RDFImporterImpl::getDataModelsAudio(std::vector<Model *> &models,
Chris@499 186 ProgressReporter *reporter)
Chris@499 187 {
Chris@499 188 SimpleSPARQLQuery query = SimpleSPARQLQuery
Chris@499 189 (SimpleSPARQLQuery::QueryFromSingleSource,
Chris@499 190 QString
Chris@499 191 (
Chris@499 192 " PREFIX mo: <http://purl.org/ontology/mo/> "
Chris@499 193 " SELECT ?signal ?source FROM <%1> "
Chris@499 194 " WHERE { ?signal a mo:Signal ; mo:available_as ?source } "
Chris@499 195 )
Chris@499 196 .arg(m_uristring));
Chris@499 197
Chris@499 198 SimpleSPARQLQuery::ResultList results = query.execute();
Chris@499 199
Chris@499 200 for (int i = 0; i < results.size(); ++i) {
Chris@499 201
Chris@499 202 QString signal = results[i]["signal"].value;
Chris@499 203 QString source = results[i]["source"].value;
Chris@499 204
Chris@522 205 FileSource *fs = new FileSource(source, reporter);
Chris@522 206 #ifdef NO_SV_GUI
Chris@522 207 if (!fs->isAvailable()) {
Chris@522 208 m_errorString = QString("Signal source \"%1\" is not available").arg(source);
Chris@522 209 delete fs;
Chris@522 210 continue;
Chris@522 211 }
Chris@522 212 #else
Chris@522 213 if (!fs->isAvailable()) {
Chris@522 214 FileFinder *ff = FileFinder::getInstance();
Chris@522 215 QString path = ff->find(FileFinder::AudioFile,
Chris@522 216 fs->getLocation(),
Chris@522 217 m_uristring);
Chris@522 218 if (path != "") {
Chris@522 219 delete fs;
Chris@522 220 fs = new FileSource(path, reporter);
Chris@522 221 if (!fs->isAvailable()) {
Chris@522 222 delete fs;
Chris@522 223 m_errorString = QString("Signal source \"%1\" is not available").arg(source);
Chris@522 224 continue;
Chris@522 225 }
Chris@499 226 }
Chris@522 227 }
Chris@522 228 #endif
Chris@522 229
Chris@522 230 if (reporter) {
Chris@522 231 reporter->setMessage(RDFImporter::tr("Importing audio referenced in RDF..."));
Chris@522 232 }
Chris@522 233 fs->waitForData();
Chris@522 234 WaveFileModel *newModel = new WaveFileModel(*fs, m_sampleRate);
Chris@522 235 if (newModel->isOK()) {
Chris@522 236 std::cerr << "Successfully created wave file model from source at \"" << source.toStdString() << "\"" << std::endl;
Chris@522 237 models.push_back(newModel);
Chris@522 238 m_audioModelMap[signal] = newModel;
Chris@522 239 if (m_sampleRate == 0) {
Chris@522 240 m_sampleRate = newModel->getSampleRate();
Chris@499 241 }
Chris@508 242 } else {
Chris@522 243 m_errorString = QString("Failed to create wave file model from source at \"%1\"").arg(source);
Chris@522 244 delete newModel;
Chris@499 245 }
Chris@522 246 delete fs;
Chris@499 247 }
Chris@499 248 }
Chris@499 249
Chris@499 250 void
Chris@440 251 RDFImporterImpl::getDataModelsDense(std::vector<Model *> &models,
Chris@440 252 ProgressReporter *reporter)
Chris@440 253 {
Chris@499 254 if (reporter) {
Chris@499 255 reporter->setMessage(RDFImporter::tr("Importing dense signal data from RDF..."));
Chris@499 256 }
Chris@499 257
Chris@440 258 SimpleSPARQLQuery query = SimpleSPARQLQuery
Chris@489 259 (SimpleSPARQLQuery::QueryFromSingleSource,
Chris@480 260 QString
Chris@440 261 (
Chris@440 262 " PREFIX mo: <http://purl.org/ontology/mo/>"
Chris@440 263 " PREFIX af: <http://purl.org/ontology/af/>"
Chris@440 264
Chris@493 265 " SELECT ?feature ?feature_signal_type ?value "
Chris@440 266 " FROM <%1> "
Chris@440 267
Chris@440 268 " WHERE { "
Chris@440 269
Chris@493 270 " ?signal af:signal_feature ?feature . "
Chris@440 271
Chris@440 272 " ?feature a ?feature_signal_type ; "
Chris@440 273 " af:value ?value . "
Chris@440 274
Chris@440 275 " } "
Chris@440 276 )
Chris@440 277 .arg(m_uristring));
Chris@440 278
Chris@440 279 SimpleSPARQLQuery::ResultList results = query.execute();
Chris@440 280
Chris@440 281 if (!query.isOK()) {
Chris@440 282 m_errorString = query.getErrorString();
Chris@440 283 return;
Chris@440 284 }
Chris@440 285
Chris@440 286 if (query.wasCancelled()) {
Chris@440 287 m_errorString = "Query cancelled";
Chris@440 288 return;
Chris@440 289 }
Chris@440 290
Chris@440 291 for (int i = 0; i < results.size(); ++i) {
Chris@440 292
Chris@440 293 QString feature = results[i]["feature"].value;
Chris@440 294 QString type = results[i]["feature_signal_type"].value;
Chris@440 295 QString value = results[i]["value"].value;
Chris@440 296
Chris@440 297 int sampleRate = 0;
Chris@440 298 int windowLength = 0;
Chris@440 299 int hopSize = 0;
Chris@440 300 int width = 0;
Chris@440 301 int height = 0;
Chris@440 302 getDenseFeatureProperties
Chris@440 303 (feature, sampleRate, windowLength, hopSize, width, height);
Chris@440 304
Chris@440 305 if (sampleRate != 0 && sampleRate != m_sampleRate) {
Chris@440 306 cerr << "WARNING: Sample rate in dense feature description does not match our underlying rate -- using rate from feature description" << endl;
Chris@440 307 }
Chris@440 308 if (sampleRate == 0) sampleRate = m_sampleRate;
Chris@440 309
Chris@440 310 if (hopSize == 0) {
Chris@440 311 cerr << "WARNING: Dense feature description does not specify a hop size -- assuming 1" << endl;
Chris@440 312 hopSize = 1;
Chris@440 313 }
Chris@440 314
Chris@440 315 if (height == 0) {
Chris@440 316 cerr << "WARNING: Dense feature description does not specify feature signal dimensions -- assuming one-dimensional (height = 1)" << endl;
Chris@440 317 height = 1;
Chris@440 318 }
Chris@440 319
Chris@440 320 QStringList values = value.split(' ', QString::SkipEmptyParts);
Chris@440 321
Chris@440 322 if (values.empty()) {
Chris@440 323 cerr << "WARNING: Dense feature description does not specify any values!" << endl;
Chris@440 324 continue;
Chris@440 325 }
Chris@440 326
Chris@440 327 if (height == 1) {
Chris@440 328
Chris@440 329 SparseTimeValueModel *m = new SparseTimeValueModel
Chris@440 330 (sampleRate, hopSize, false);
Chris@440 331
Chris@440 332 for (int j = 0; j < values.size(); ++j) {
Chris@440 333 float f = values[j].toFloat();
Chris@440 334 SparseTimeValueModel::Point point(j * hopSize, f, "");
Chris@440 335 m->addPoint(point);
Chris@440 336 }
Chris@493 337
Chris@493 338 getDenseModelTitle(m, feature, type);
Chris@440 339
Chris@440 340 models.push_back(m);
Chris@440 341
Chris@440 342 } else {
Chris@440 343
Chris@440 344 EditableDenseThreeDimensionalModel *m =
Chris@535 345 new EditableDenseThreeDimensionalModel
Chris@535 346 (sampleRate, hopSize, height,
Chris@535 347 EditableDenseThreeDimensionalModel::NoCompression, false);
Chris@440 348
Chris@440 349 EditableDenseThreeDimensionalModel::Column column;
Chris@440 350
Chris@440 351 int x = 0;
Chris@440 352
Chris@440 353 for (int j = 0; j < values.size(); ++j) {
Chris@440 354 if (j % height == 0 && !column.empty()) {
Chris@440 355 m->setColumn(x++, column);
Chris@440 356 column.clear();
Chris@440 357 }
Chris@440 358 column.push_back(values[j].toFloat());
Chris@440 359 }
Chris@440 360
Chris@440 361 if (!column.empty()) {
Chris@440 362 m->setColumn(x++, column);
Chris@440 363 }
Chris@440 364
Chris@493 365 getDenseModelTitle(m, feature, type);
Chris@493 366
Chris@440 367 models.push_back(m);
Chris@440 368 }
Chris@440 369 }
Chris@440 370 }
Chris@440 371
Chris@440 372 void
Chris@493 373 RDFImporterImpl::getDenseModelTitle(Model *m,
Chris@493 374 QString featureUri,
Chris@493 375 QString featureTypeUri)
Chris@493 376 {
Chris@493 377 QString titleQuery = QString
Chris@493 378 (
Chris@493 379 " PREFIX dc: <http://purl.org/dc/elements/1.1/> "
Chris@493 380 " SELECT ?title "
Chris@493 381 " FROM <%1> "
Chris@493 382 " WHERE { "
Chris@493 383 " <%2> dc:title ?title . "
Chris@493 384 " } "
Chris@493 385 ).arg(m_uristring);
Chris@493 386
Chris@493 387 SimpleSPARQLQuery::Value v;
Chris@493 388
Chris@493 389 v = SimpleSPARQLQuery::singleResultQuery
Chris@493 390 (SimpleSPARQLQuery::QueryFromSingleSource,
Chris@493 391 titleQuery.arg(featureUri),
Chris@493 392 "title");
Chris@493 393
Chris@493 394 if (v.value != "") {
Chris@493 395 std::cerr << "RDFImporterImpl::getDenseModelTitle: Title (from signal) \"" << v.value.toStdString() << "\"" << std::endl;
Chris@493 396 m->setObjectName(v.value);
Chris@493 397 return;
Chris@493 398 }
Chris@493 399
Chris@493 400 v = SimpleSPARQLQuery::singleResultQuery
Chris@493 401 (SimpleSPARQLQuery::QueryFromSingleSource,
Chris@493 402 titleQuery.arg(featureTypeUri),
Chris@493 403 "title");
Chris@493 404
Chris@493 405 if (v.value != "") {
Chris@493 406 std::cerr << "RDFImporterImpl::getDenseModelTitle: Title (from signal type) \"" << v.value.toStdString() << "\"" << std::endl;
Chris@493 407 m->setObjectName(v.value);
Chris@493 408 return;
Chris@493 409 }
Chris@493 410
Chris@493 411 std::cerr << "RDFImporterImpl::getDenseModelTitle: No title available for feature <" << featureUri.toStdString() << ">" << std::endl;
Chris@493 412 }
Chris@493 413
Chris@493 414 void
Chris@440 415 RDFImporterImpl::getDenseFeatureProperties(QString featureUri,
Chris@440 416 int &sampleRate, int &windowLength,
Chris@440 417 int &hopSize, int &width, int &height)
Chris@440 418 {
Chris@489 419 SimpleSPARQLQuery::QueryType s = SimpleSPARQLQuery::QueryFromSingleSource;
Chris@489 420
Chris@440 421 QString dimensionsQuery
Chris@440 422 (
Chris@440 423 " PREFIX mo: <http://purl.org/ontology/mo/>"
Chris@440 424 " PREFIX af: <http://purl.org/ontology/af/>"
Chris@440 425
Chris@440 426 " SELECT ?dimensions "
Chris@440 427 " FROM <%1> "
Chris@440 428
Chris@440 429 " WHERE { "
Chris@440 430
Chris@440 431 " <%2> af:dimensions ?dimensions . "
Chris@440 432
Chris@440 433 " } "
Chris@440 434 );
Chris@440 435
Chris@440 436 SimpleSPARQLQuery::Value dimensionsValue =
Chris@489 437 SimpleSPARQLQuery::singleResultQuery
Chris@489 438 (s, dimensionsQuery.arg(m_uristring).arg(featureUri), "dimensions");
Chris@440 439
Chris@440 440 cerr << "Dimensions = \"" << dimensionsValue.value.toStdString() << "\""
Chris@440 441 << endl;
Chris@440 442
Chris@440 443 if (dimensionsValue.value != "") {
Chris@440 444 QStringList dl = dimensionsValue.value.split(" ");
Chris@440 445 if (dl.empty()) dl.push_back(dimensionsValue.value);
Chris@440 446 if (dl.size() > 0) height = dl[0].toInt();
Chris@440 447 if (dl.size() > 1) width = dl[1].toInt();
Chris@440 448 }
Chris@440 449
Chris@440 450 QString queryTemplate
Chris@440 451 (
Chris@440 452 " PREFIX mo: <http://purl.org/ontology/mo/>"
Chris@440 453 " PREFIX af: <http://purl.org/ontology/af/>"
Chris@440 454 " PREFIX tl: <http://purl.org/NET/c4dm/timeline.owl#>"
Chris@440 455
Chris@440 456 " SELECT ?%3 "
Chris@440 457 " FROM <%1> "
Chris@440 458
Chris@440 459 " WHERE { "
Chris@440 460
Chris@440 461 " <%2> mo:time ?time . "
Chris@440 462
Chris@440 463 " ?time a tl:Interval ; "
Chris@440 464 " tl:onTimeLine ?timeline . "
Chris@440 465
Chris@440 466 " ?map tl:rangeTimeLine ?timeline . "
Chris@440 467
Chris@440 468 " ?map tl:%3 ?%3 . "
Chris@440 469
Chris@440 470 " } "
Chris@440 471 );
Chris@440 472
Chris@440 473 // Another laborious workaround for rasqal's failure to handle
Chris@440 474 // multiple optionals properly
Chris@440 475
Chris@440 476 SimpleSPARQLQuery::Value srValue =
Chris@489 477 SimpleSPARQLQuery::singleResultQuery(s,
Chris@480 478 queryTemplate
Chris@440 479 .arg(m_uristring).arg(featureUri)
Chris@440 480 .arg("sampleRate"),
Chris@440 481 "sampleRate");
Chris@440 482 if (srValue.value != "") {
Chris@440 483 sampleRate = srValue.value.toInt();
Chris@440 484 }
Chris@440 485
Chris@440 486 SimpleSPARQLQuery::Value hopValue =
Chris@489 487 SimpleSPARQLQuery::singleResultQuery(s,
Chris@480 488 queryTemplate
Chris@440 489 .arg(m_uristring).arg(featureUri)
Chris@440 490 .arg("hopSize"),
Chris@440 491 "hopSize");
Chris@440 492 if (srValue.value != "") {
Chris@440 493 hopSize = hopValue.value.toInt();
Chris@440 494 }
Chris@440 495
Chris@440 496 SimpleSPARQLQuery::Value winValue =
Chris@489 497 SimpleSPARQLQuery::singleResultQuery(s,
Chris@480 498 queryTemplate
Chris@440 499 .arg(m_uristring).arg(featureUri)
Chris@440 500 .arg("windowLength"),
Chris@440 501 "windowLength");
Chris@440 502 if (winValue.value != "") {
Chris@440 503 windowLength = winValue.value.toInt();
Chris@440 504 }
Chris@440 505
Chris@440 506 cerr << "sr = " << sampleRate << ", hop = " << hopSize << ", win = " << windowLength << endl;
Chris@440 507 }
Chris@440 508
Chris@440 509 void
Chris@440 510 RDFImporterImpl::getDataModelsSparse(std::vector<Model *> &models,
Chris@440 511 ProgressReporter *reporter)
Chris@440 512 {
Chris@499 513 if (reporter) {
Chris@499 514 reporter->setMessage(RDFImporter::tr("Importing event data from RDF..."));
Chris@499 515 }
Chris@499 516
Chris@489 517 SimpleSPARQLQuery::QueryType s = SimpleSPARQLQuery::QueryFromSingleSource;
Chris@489 518
Chris@439 519 // Our query is intended to retrieve every thing that has a time,
Chris@439 520 // and every feature type and value associated with a thing that
Chris@439 521 // has a time.
Chris@439 522
Chris@439 523 // We will then need to refine this big bag of results into a set
Chris@439 524 // of data models.
Chris@439 525
Chris@439 526 // Results that have different source signals should go into
Chris@439 527 // different models.
Chris@439 528
Chris@439 529 // Results that have different feature types should go into
Chris@439 530 // different models.
Chris@439 531
Chris@439 532 // Results that are sparse should go into different models from
Chris@439 533 // those that are dense (we need to examine the timestamps to
Chris@439 534 // establish this -- if the timestamps are regular, the results
Chris@439 535 // are dense -- so we can't do it as we go along, only after
Chris@439 536 // collecting all results).
Chris@439 537
Chris@439 538 // Timed things that have features associated with them should not
Chris@439 539 // appear directly in any model -- their features should appear
Chris@439 540 // instead -- and these should be different models from those used
Chris@439 541 // for timed things that do not have features.
Chris@439 542
Chris@439 543 // As we load the results, we'll push them into a partially
Chris@439 544 // structured container that maps from source signal (URI as
Chris@439 545 // string) -> feature type (likewise) -> time -> list of values.
Chris@439 546 // If the source signal or feature type is unavailable, the empty
Chris@439 547 // string will do.
Chris@439 548
Chris@449 549 QString prefixes = QString(
Chris@439 550 " PREFIX event: <http://purl.org/NET/c4dm/event.owl#>"
Chris@449 551 " PREFIX tl: <http://purl.org/NET/c4dm/timeline.owl#>"
Chris@439 552 " PREFIX mo: <http://purl.org/ontology/mo/>"
Chris@439 553 " PREFIX af: <http://purl.org/ontology/af/>"
Chris@449 554 " PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>"
Chris@449 555 );
Chris@439 556
Chris@449 557 QString queryString = prefixes + QString(
Chris@449 558
Chris@499 559 " SELECT ?signal ?timed_thing ?event_type ?value"
Chris@439 560 " FROM <%1>"
Chris@439 561
Chris@439 562 " WHERE {"
Chris@440 563
Chris@440 564 " ?signal a mo:Signal ."
Chris@440 565
Chris@439 566 " ?signal mo:time ?interval ."
Chris@449 567 " ?interval tl:onTimeLine ?tl ."
Chris@449 568 " ?time tl:onTimeLine ?tl ."
Chris@449 569 " ?timed_thing event:time ?time ."
Chris@440 570 " ?timed_thing a ?event_type ."
Chris@440 571
Chris@439 572 " OPTIONAL {"
Chris@440 573 " ?timed_thing af:feature ?value"
Chris@439 574 " }"
Chris@439 575 " }"
Chris@439 576
Chris@439 577 ).arg(m_uristring);
Chris@439 578
Chris@449 579 QString timeQueryString = prefixes + QString(
Chris@449 580
Chris@449 581 " SELECT ?time FROM <%1> "
Chris@449 582 " WHERE { "
Chris@449 583 " <%2> event:time ?t . "
Chris@449 584 " ?t tl:at ?time . "
Chris@449 585 " } "
Chris@449 586
Chris@449 587 ).arg(m_uristring);
Chris@449 588
Chris@449 589 QString rangeQueryString = prefixes + QString(
Chris@449 590
Chris@449 591 " SELECT ?time ?duration FROM <%1> "
Chris@449 592 " WHERE { "
Chris@449 593 " <%2> event:time ?t . "
Chris@449 594 " ?t tl:beginsAt ?time . "
Chris@449 595 " ?t tl:duration ?duration . "
Chris@449 596 " } "
Chris@449 597
Chris@449 598 ).arg(m_uristring);
Chris@449 599
Chris@449 600 QString labelQueryString = prefixes + QString(
Chris@449 601
Chris@449 602 " SELECT ?label FROM <%1> "
Chris@449 603 " WHERE { "
Chris@449 604 " <%2> rdfs:label ?label . "
Chris@449 605 " } "
Chris@449 606
Chris@449 607 ).arg(m_uristring);
Chris@449 608
Chris@510 609 QString textQueryString = prefixes + QString(
Chris@510 610
Chris@510 611 " SELECT ?label FROM <%1> "
Chris@510 612 " WHERE { "
Chris@510 613 " <%2> af:text ?label . "
Chris@510 614 " } "
Chris@510 615
Chris@510 616 ).arg(m_uristring);
Chris@510 617
Chris@489 618 SimpleSPARQLQuery query(s, queryString);
Chris@439 619 query.setProgressReporter(reporter);
Chris@439 620
Chris@500 621 // cerr << "Query will be: " << queryString.toStdString() << endl;
Chris@439 622
Chris@439 623 SimpleSPARQLQuery::ResultList results = query.execute();
Chris@439 624
Chris@439 625 if (!query.isOK()) {
Chris@439 626 m_errorString = query.getErrorString();
Chris@440 627 return;
Chris@439 628 }
Chris@439 629
Chris@439 630 if (query.wasCancelled()) {
Chris@439 631 m_errorString = "Query cancelled";
Chris@440 632 return;
Chris@439 633 }
Chris@439 634
Chris@449 635 /*
Chris@449 636 This function is now only used for sparse data (for dense data
Chris@449 637 we would be in getDataModelsDense instead).
Chris@449 638
Chris@449 639 For sparse data, the determining factors in deciding what model
Chris@449 640 to use are: Do the features have values? and Do the features
Chris@449 641 have duration?
Chris@449 642
Chris@449 643 We can run through the results and check off whether we find
Chris@449 644 values and duration for each of the source+type keys, and then
Chris@449 645 run through the source+type keys pushing each of the results
Chris@449 646 into a suitable model.
Chris@449 647
Chris@449 648 Unfortunately, at this point we do not yet have any actual
Chris@449 649 timing data (time/duration) -- just the time URI.
Chris@449 650
Chris@449 651 What we _could_ do is to create one of each type of model at the
Chris@449 652 start, for each of the source+type keys, and then push each
Chris@449 653 feature into the relevant model depending on what we find out
Chris@449 654 about it. Then return only non-empty models.
Chris@449 655 */
Chris@449 656
Chris@449 657 // Map from signal source to event type to dimensionality to
Chris@449 658 // presence of duration to model ptr. Whee!
Chris@449 659 std::map<QString, std::map<QString, std::map<int, std::map<bool, Model *> > > >
Chris@449 660 modelMap;
Chris@449 661
Chris@439 662 for (int i = 0; i < results.size(); ++i) {
Chris@439 663
Chris@499 664 if (i % 4 == 0) {
Chris@499 665 if (reporter) reporter->setProgress(i/4);
Chris@499 666 }
Chris@499 667
Chris@499 668 QString source = results[i]["signal"].value;
Chris@449 669 QString type = results[i]["event_type"].value;
Chris@449 670 QString thinguri = results[i]["timed_thing"].value;
Chris@449 671
Chris@449 672 RealTime time;
Chris@449 673 RealTime duration;
Chris@439 674
Chris@449 675 bool haveTime = false;
Chris@449 676 bool haveDuration = false;
Chris@439 677
Chris@510 678 QString label = "";
Chris@510 679 bool text = (type.contains("Text") || type.contains("text")); // Ha, ha
Chris@510 680
Chris@510 681 if (text) {
Chris@510 682 label = SimpleSPARQLQuery::singleResultQuery
Chris@510 683 (s, textQueryString.arg(thinguri), "label").value;
Chris@510 684 }
Chris@510 685
Chris@510 686 if (label == "") {
Chris@510 687 label = SimpleSPARQLQuery::singleResultQuery
Chris@510 688 (s, labelQueryString.arg(thinguri), "label").value;
Chris@510 689 }
Chris@449 690
Chris@489 691 SimpleSPARQLQuery rangeQuery(s, rangeQueryString.arg(thinguri));
Chris@450 692 SimpleSPARQLQuery::ResultList rangeResults = rangeQuery.execute();
Chris@450 693 if (!rangeResults.empty()) {
Chris@450 694 // std::cerr << rangeResults.size() << " range results" << std::endl;
Chris@450 695 time = RealTime::fromXsdDuration
Chris@450 696 (rangeResults[0]["time"].value.toStdString());
Chris@450 697 duration = RealTime::fromXsdDuration
Chris@450 698 (rangeResults[0]["duration"].value.toStdString());
Chris@450 699 // std::cerr << "duration string " << rangeResults[0]["duration"].value.toStdString() << std::endl;
Chris@449 700 haveTime = true;
Chris@450 701 haveDuration = true;
Chris@449 702 } else {
Chris@450 703 QString timestring = SimpleSPARQLQuery::singleResultQuery
Chris@489 704 (s, timeQueryString.arg(thinguri), "time").value;
Chris@520 705 // std::cerr << "timestring = " << timestring.toStdString() << std::endl;
Chris@450 706 if (timestring != "") {
Chris@450 707 time = RealTime::fromXsdDuration(timestring.toStdString());
Chris@449 708 haveTime = true;
Chris@449 709 }
Chris@449 710 }
Chris@439 711
Chris@439 712 QString valuestring = results[i]["value"].value;
Chris@449 713 std::vector<float> values;
Chris@449 714
Chris@439 715 if (valuestring != "") {
Chris@449 716 QStringList vsl = valuestring.split(" ", QString::SkipEmptyParts);
Chris@449 717 for (int j = 0; j < vsl.size(); ++j) {
Chris@449 718 bool success = false;
Chris@449 719 float v = vsl[j].toFloat(&success);
Chris@449 720 if (success) values.push_back(v);
Chris@449 721 }
Chris@439 722 }
Chris@439 723
Chris@449 724 int dimensions = 1;
Chris@449 725 if (values.size() == 1) dimensions = 2;
Chris@449 726 else if (values.size() > 1) dimensions = 3;
Chris@449 727
Chris@449 728 Model *model = 0;
Chris@449 729
Chris@449 730 if (modelMap[source][type][dimensions].find(haveDuration) ==
Chris@449 731 modelMap[source][type][dimensions].end()) {
Chris@449 732
Chris@449 733 /*
Chris@449 734 std::cerr << "Creating new model: source = " << source.toStdString()
Chris@449 735 << ", type = " << type.toStdString() << ", dimensions = "
Chris@449 736 << dimensions << ", haveDuration = " << haveDuration
Chris@449 737 << ", time = " << time << ", duration = " << duration
Chris@449 738 << std::endl;
Chris@449 739 */
Chris@449 740
Chris@449 741 if (!haveDuration) {
Chris@449 742
Chris@449 743 if (dimensions == 1) {
Chris@449 744
Chris@510 745 if (text) {
Chris@510 746
Chris@510 747 model = new TextModel(m_sampleRate, 1, false);
Chris@510 748
Chris@510 749 } else {
Chris@510 750
Chris@510 751 model = new SparseOneDimensionalModel(m_sampleRate, 1, false);
Chris@510 752 }
Chris@449 753
Chris@449 754 } else if (dimensions == 2) {
Chris@449 755
Chris@510 756 if (text) {
Chris@510 757
Chris@510 758 model = new TextModel(m_sampleRate, 1, false);
Chris@510 759
Chris@510 760 } else {
Chris@510 761
Chris@510 762 model = new SparseTimeValueModel(m_sampleRate, 1, false);
Chris@510 763 }
Chris@449 764
Chris@449 765 } else {
Chris@449 766
Chris@449 767 // We don't have a three-dimensional sparse model,
Chris@449 768 // so use a note model. We do have some logic (in
Chris@449 769 // extractStructure below) for guessing whether
Chris@449 770 // this should after all have been a dense model,
Chris@449 771 // but it's hard to apply it because we don't have
Chris@449 772 // all the necessary timing data yet... hmm
Chris@449 773
Chris@449 774 model = new NoteModel(m_sampleRate, 1, false);
Chris@449 775 }
Chris@449 776
Chris@449 777 } else { // haveDuration
Chris@449 778
Chris@449 779 if (dimensions == 1 || dimensions == 2) {
Chris@449 780
Chris@449 781 // If our units are frequency or midi pitch, we
Chris@449 782 // should be using a note model... hm
Chris@449 783
Chris@449 784 model = new RegionModel(m_sampleRate, 1, false);
Chris@449 785
Chris@449 786 } else {
Chris@449 787
Chris@449 788 // We don't have a three-dimensional sparse model,
Chris@449 789 // so use a note model. We do have some logic (in
Chris@449 790 // extractStructure below) for guessing whether
Chris@449 791 // this should after all have been a dense model,
Chris@449 792 // but it's hard to apply it because we don't have
Chris@449 793 // all the necessary timing data yet... hmm
Chris@449 794
Chris@449 795 model = new NoteModel(m_sampleRate, 1, false);
Chris@449 796 }
Chris@449 797 }
Chris@449 798
Chris@499 799 if (m_audioModelMap.find(source) != m_audioModelMap.end()) {
Chris@499 800 std::cerr << "source model for " << model << " is " << m_audioModelMap[source] << std::endl;
Chris@499 801 model->setSourceModel(m_audioModelMap[source]);
Chris@499 802 }
Chris@499 803
Chris@493 804 QString titleQuery = QString
Chris@493 805 (
Chris@493 806 " PREFIX dc: <http://purl.org/dc/elements/1.1/> "
Chris@493 807 " SELECT ?title "
Chris@493 808 " FROM <%1> "
Chris@493 809 " WHERE { "
Chris@493 810 " <%2> dc:title ?title . "
Chris@493 811 " } "
Chris@493 812 ).arg(m_uristring).arg(type);
Chris@493 813 QString title = SimpleSPARQLQuery::singleResultQuery
Chris@493 814 (s, titleQuery, "title").value;
Chris@493 815 if (title != "") model->setObjectName(title);
Chris@493 816
Chris@449 817 modelMap[source][type][dimensions][haveDuration] = model;
Chris@449 818 models.push_back(model);
Chris@449 819 }
Chris@449 820
Chris@449 821 model = modelMap[source][type][dimensions][haveDuration];
Chris@449 822
Chris@449 823 if (model) {
Chris@449 824 long ftime = RealTime::realTime2Frame(time, m_sampleRate);
Chris@449 825 long fduration = RealTime::realTime2Frame(duration, m_sampleRate);
Chris@449 826 fillModel(model, ftime, fduration, haveDuration, values, label);
Chris@439 827 }
Chris@439 828 }
Chris@439 829 }
Chris@439 830
Chris@439 831 void
Chris@449 832 RDFImporterImpl::fillModel(Model *model,
Chris@449 833 long ftime,
Chris@449 834 long fduration,
Chris@449 835 bool haveDuration,
Chris@449 836 std::vector<float> &values,
Chris@449 837 QString label)
Chris@449 838 {
Chris@493 839 // std::cerr << "RDFImporterImpl::fillModel: adding point at frame " << ftime << std::endl;
Chris@492 840
Chris@449 841 SparseOneDimensionalModel *sodm =
Chris@449 842 dynamic_cast<SparseOneDimensionalModel *>(model);
Chris@449 843 if (sodm) {
Chris@449 844 SparseOneDimensionalModel::Point point(ftime, label);
Chris@449 845 sodm->addPoint(point);
Chris@449 846 return;
Chris@449 847 }
Chris@449 848
Chris@510 849 TextModel *tm =
Chris@510 850 dynamic_cast<TextModel *>(model);
Chris@510 851 if (tm) {
Chris@510 852 TextModel::Point point
Chris@510 853 (ftime,
Chris@510 854 values.empty() ? 0.5f : values[0] < 0.f ? 0.f : values[0] > 1.f ? 1.f : values[0], // I was young and feckless once too
Chris@510 855 label);
Chris@510 856 tm->addPoint(point);
Chris@510 857 return;
Chris@510 858 }
Chris@510 859
Chris@449 860 SparseTimeValueModel *stvm =
Chris@449 861 dynamic_cast<SparseTimeValueModel *>(model);
Chris@449 862 if (stvm) {
Chris@449 863 SparseTimeValueModel::Point point
Chris@449 864 (ftime, values.empty() ? 0.f : values[0], label);
Chris@449 865 stvm->addPoint(point);
Chris@449 866 return;
Chris@449 867 }
Chris@449 868
Chris@449 869 NoteModel *nm =
Chris@449 870 dynamic_cast<NoteModel *>(model);
Chris@449 871 if (nm) {
Chris@449 872 if (haveDuration) {
Chris@449 873 float value = 0.f, level = 1.f;
Chris@449 874 if (!values.empty()) {
Chris@449 875 value = values[0];
Chris@449 876 if (values.size() > 1) {
Chris@449 877 level = values[1];
Chris@449 878 }
Chris@449 879 }
Chris@449 880 NoteModel::Point point(ftime, value, fduration, level, label);
Chris@449 881 nm->addPoint(point);
Chris@449 882 } else {
Chris@449 883 float value = 0.f, duration = 1.f, level = 1.f;
Chris@449 884 if (!values.empty()) {
Chris@449 885 value = values[0];
Chris@449 886 if (values.size() > 1) {
Chris@449 887 duration = values[1];
Chris@449 888 if (values.size() > 2) {
Chris@449 889 level = values[2];
Chris@449 890 }
Chris@449 891 }
Chris@449 892 }
Chris@449 893 NoteModel::Point point(ftime, value, duration, level, label);
Chris@449 894 nm->addPoint(point);
Chris@449 895 }
Chris@449 896 return;
Chris@449 897 }
Chris@449 898
Chris@449 899 RegionModel *rm =
Chris@449 900 dynamic_cast<RegionModel *>(model);
Chris@449 901 if (rm) {
Chris@449 902 if (haveDuration) {
Chris@449 903 RegionModel::Point point
Chris@449 904 (ftime, values.empty() ? 0.f : values[0], fduration, label);
Chris@449 905 rm->addPoint(point);
Chris@449 906 } else {
Chris@449 907 // This won't actually happen -- we only create region models
Chris@449 908 // if we do have duration -- but just for completeness
Chris@449 909 float value = 0.f, duration = 1.f;
Chris@449 910 if (!values.empty()) {
Chris@449 911 value = values[0];
Chris@449 912 if (values.size() > 1) {
Chris@449 913 duration = values[1];
Chris@449 914 }
Chris@449 915 }
Chris@449 916 RegionModel::Point point(ftime, value, duration, label);
Chris@449 917 rm->addPoint(point);
Chris@449 918 }
Chris@449 919 return;
Chris@449 920 }
Chris@449 921
Chris@449 922 std::cerr << "WARNING: RDFImporterImpl::fillModel: Unknown or unexpected model type" << std::endl;
Chris@449 923 return;
Chris@449 924 }
Chris@449 925
Chris@490 926 RDFImporter::RDFDocumentType
Chris@490 927 RDFImporter::identifyDocumentType(QString url)
Chris@490 928 {
Chris@490 929 bool haveAudio = false;
Chris@490 930 bool haveAnnotations = false;
Chris@449 931
Chris@499 932 // This query is not expected to return any values, but if it
Chris@499 933 // executes successfully (leaving no error in the error string)
Chris@499 934 // then we know we have RDF
Chris@499 935 SimpleSPARQLQuery q(SimpleSPARQLQuery::QueryFromSingleSource,
Chris@499 936 QString(" SELECT ?x FROM <%1> WHERE { ?x <y> <z> } ")
Chris@499 937 .arg(url));
Chris@499 938
Chris@499 939 SimpleSPARQLQuery::ResultList r = q.execute();
Chris@499 940 if (!q.isOK()) {
Chris@542 941 SimpleSPARQLQuery::closeSingleSource(url);
Chris@499 942 return NotRDF;
Chris@499 943 }
Chris@499 944
Chris@490 945 SimpleSPARQLQuery::Value value =
Chris@490 946 SimpleSPARQLQuery::singleResultQuery
Chris@490 947 (SimpleSPARQLQuery::QueryFromSingleSource,
Chris@490 948 QString
Chris@490 949 (" PREFIX mo: <http://purl.org/ontology/mo/> "
Chris@490 950 " SELECT ?url FROM <%1> "
Chris@490 951 " WHERE { ?signal a mo:Signal ; mo:available_as ?url } "
Chris@490 952 ).arg(url),
Chris@490 953 "url");
Chris@490 954
Chris@490 955 if (value.type == SimpleSPARQLQuery::URIValue) {
Chris@490 956 haveAudio = true;
Chris@490 957 }
Chris@490 958
Chris@490 959 value =
Chris@490 960 SimpleSPARQLQuery::singleResultQuery
Chris@490 961 (SimpleSPARQLQuery::QueryFromSingleSource,
Chris@490 962 QString
Chris@490 963 (" PREFIX event: <http://purl.org/NET/c4dm/event.owl#> "
Chris@490 964 " SELECT ?thing FROM <%1> "
Chris@490 965 " WHERE { ?thing event:time ?time } "
Chris@490 966 ).arg(url),
Chris@490 967 "thing");
Chris@490 968
Chris@490 969 if (value.type == SimpleSPARQLQuery::URIValue) {
Chris@490 970 haveAnnotations = true;
Chris@490 971 }
Chris@490 972
Chris@490 973 if (!haveAnnotations) {
Chris@490 974
Chris@490 975 value =
Chris@490 976 SimpleSPARQLQuery::singleResultQuery
Chris@490 977 (SimpleSPARQLQuery::QueryFromSingleSource,
Chris@490 978 QString
Chris@490 979 (" PREFIX af: <http://purl.org/ontology/af/> "
Chris@490 980 " SELECT ?thing FROM <%1> "
Chris@490 981 " WHERE { ?signal af:signal_feature ?thing } "
Chris@490 982 ).arg(url),
Chris@490 983 "thing");
Chris@490 984
Chris@490 985 if (value.type == SimpleSPARQLQuery::URIValue) {
Chris@490 986 haveAnnotations = true;
Chris@490 987 }
Chris@490 988 }
Chris@490 989
Chris@542 990 SimpleSPARQLQuery::closeSingleSource(url);
Chris@542 991
Chris@490 992 if (haveAudio) {
Chris@490 993 if (haveAnnotations) {
Chris@490 994 return AudioRefAndAnnotations;
Chris@490 995 } else {
Chris@490 996 return AudioRef;
Chris@490 997 }
Chris@490 998 } else {
Chris@490 999 if (haveAnnotations) {
Chris@490 1000 return Annotations;
Chris@490 1001 } else {
Chris@499 1002 return OtherRDFDocument;
Chris@490 1003 }
Chris@490 1004 }
Chris@492 1005
Chris@542 1006 return OtherRDFDocument;
Chris@490 1007 }
Chris@490 1008
Chris@520 1009 void
Chris@520 1010 RDFImporterImpl::loadPrefixes(ProgressReporter *reporter)
Chris@520 1011 {
Chris@520 1012 return;
Chris@520 1013 //!!!
Chris@520 1014 if (m_prefixesLoaded) return;
Chris@520 1015 const char *prefixes[] = {
Chris@520 1016 "http://purl.org/NET/c4dm/event.owl",
Chris@520 1017 "http://purl.org/NET/c4dm/timeline.owl",
Chris@520 1018 "http://purl.org/ontology/mo/",
Chris@520 1019 "http://purl.org/ontology/af/",
Chris@520 1020 "http://www.w3.org/2000/01/rdf-schema",
Chris@520 1021 "http://purl.org/dc/elements/1.1/",
Chris@520 1022 };
Chris@520 1023 for (size_t i = 0; i < sizeof(prefixes)/sizeof(prefixes[0]); ++i) {
Chris@520 1024 CachedFile cf(prefixes[i], reporter, "application/rdf+xml");
Chris@520 1025 if (!cf.isOK()) continue;
Chris@520 1026 SimpleSPARQLQuery::addSourceToModel
Chris@520 1027 (QUrl::fromLocalFile(cf.getLocalFilename()).toString());
Chris@520 1028 }
Chris@520 1029 m_prefixesLoaded = true;
Chris@520 1030 }