annotate data/fileio/CSVFileReader.cpp @ 575:8688430850d6

* either I'm going mad or the compiler is... valgrind and sizeof both seem to think that reading or writing m_size is reading beyond the end of the object, unless I add m_spare padding... why?
author Chris Cannam
date Mon, 16 Mar 2009 16:32:02 +0000
parents 3ccf48fb81d6
children dd97f7b3d120
rev   line source
Chris@148 1 /* -*- c-basic-offset: 4 indent-tabs-mode: nil -*- vi:set ts=8 sts=4 sw=4: */
Chris@148 2
Chris@148 3 /*
Chris@148 4 Sonic Visualiser
Chris@148 5 An audio file viewer and annotation editor.
Chris@148 6 Centre for Digital Music, Queen Mary, University of London.
Chris@148 7 This file copyright 2006 Chris Cannam.
Chris@148 8
Chris@148 9 This program is free software; you can redistribute it and/or
Chris@148 10 modify it under the terms of the GNU General Public License as
Chris@148 11 published by the Free Software Foundation; either version 2 of the
Chris@148 12 License, or (at your option) any later version. See the file
Chris@148 13 COPYING included with this distribution for more information.
Chris@148 14 */
Chris@148 15
Chris@148 16 #include "CSVFileReader.h"
Chris@148 17
Chris@150 18 #include "model/Model.h"
Chris@148 19 #include "base/RealTime.h"
Chris@148 20 #include "model/SparseOneDimensionalModel.h"
Chris@148 21 #include "model/SparseTimeValueModel.h"
Chris@152 22 #include "model/EditableDenseThreeDimensionalModel.h"
Chris@308 23 #include "DataFileReaderFactory.h"
Chris@148 24
Chris@148 25 #include <QFile>
Chris@148 26 #include <QString>
Chris@148 27 #include <QRegExp>
Chris@148 28 #include <QStringList>
Chris@148 29 #include <QTextStream>
Chris@148 30
Chris@148 31 #include <iostream>
Chris@148 32
Chris@392 33 CSVFileReader::CSVFileReader(QString path, CSVFormat format,
Chris@392 34 size_t mainModelSampleRate) :
Chris@392 35 m_format(format),
Chris@148 36 m_file(0),
Chris@148 37 m_mainModelSampleRate(mainModelSampleRate)
Chris@148 38 {
Chris@148 39 m_file = new QFile(path);
Chris@148 40 bool good = false;
Chris@148 41
Chris@148 42 if (!m_file->exists()) {
Chris@148 43 m_error = QFile::tr("File \"%1\" does not exist").arg(path);
Chris@148 44 } else if (!m_file->open(QIODevice::ReadOnly | QIODevice::Text)) {
Chris@148 45 m_error = QFile::tr("Failed to open file \"%1\"").arg(path);
Chris@148 46 } else {
Chris@148 47 good = true;
Chris@148 48 }
Chris@148 49
Chris@148 50 if (!good) {
Chris@148 51 delete m_file;
Chris@148 52 m_file = 0;
Chris@148 53 }
Chris@148 54 }
Chris@148 55
Chris@148 56 CSVFileReader::~CSVFileReader()
Chris@148 57 {
Chris@148 58 std::cerr << "CSVFileReader::~CSVFileReader: file is " << m_file << std::endl;
Chris@148 59
Chris@148 60 if (m_file) {
Chris@148 61 std::cerr << "CSVFileReader::CSVFileReader: Closing file" << std::endl;
Chris@148 62 m_file->close();
Chris@148 63 }
Chris@148 64 delete m_file;
Chris@148 65 }
Chris@148 66
Chris@148 67 bool
Chris@148 68 CSVFileReader::isOK() const
Chris@148 69 {
Chris@148 70 return (m_file != 0);
Chris@148 71 }
Chris@148 72
Chris@148 73 QString
Chris@148 74 CSVFileReader::getError() const
Chris@148 75 {
Chris@148 76 return m_error;
Chris@148 77 }
Chris@148 78
Chris@148 79 Model *
Chris@148 80 CSVFileReader::load() const
Chris@148 81 {
Chris@148 82 if (!m_file) return 0;
Chris@392 83 /*!!!
Chris@148 84 CSVFormatDialog *dialog = new CSVFormatDialog
Chris@148 85 (0, m_file, m_mainModelSampleRate);
Chris@148 86
Chris@148 87 if (dialog->exec() == QDialog::Rejected) {
Chris@148 88 delete dialog;
Chris@308 89 throw DataFileReaderFactory::ImportCancelled;
Chris@148 90 }
Chris@392 91 */
Chris@148 92
Chris@392 93 CSVFormat::ModelType modelType = m_format.getModelType();
Chris@392 94 CSVFormat::TimingType timingType = m_format.getTimingType();
Chris@392 95 CSVFormat::TimeUnits timeUnits = m_format.getTimeUnits();
Chris@392 96 QString separator = m_format.getSeparator();
Chris@392 97 QString::SplitBehavior behaviour = m_format.getSplitBehaviour();
Chris@392 98 size_t sampleRate = m_format.getSampleRate();
Chris@392 99 size_t windowSize = m_format.getWindowSize();
Chris@148 100
Chris@392 101 if (timingType == CSVFormat::ExplicitTiming) {
Chris@148 102 windowSize = 1;
Chris@392 103 if (timeUnits == CSVFormat::TimeSeconds) {
Chris@148 104 sampleRate = m_mainModelSampleRate;
Chris@148 105 }
Chris@148 106 }
Chris@148 107
Chris@148 108 SparseOneDimensionalModel *model1 = 0;
Chris@148 109 SparseTimeValueModel *model2 = 0;
Chris@152 110 EditableDenseThreeDimensionalModel *model3 = 0;
Chris@148 111 Model *model = 0;
Chris@148 112
Chris@148 113 QTextStream in(m_file);
Chris@148 114 in.seek(0);
Chris@148 115
Chris@148 116 unsigned int warnings = 0, warnLimit = 10;
Chris@148 117 unsigned int lineno = 0;
Chris@148 118
Chris@148 119 float min = 0.0, max = 0.0;
Chris@148 120
Chris@148 121 size_t frameNo = 0;
Chris@148 122
Chris@148 123 while (!in.atEnd()) {
Chris@148 124
Chris@283 125 // QTextStream's readLine doesn't cope with old-style Mac
Chris@283 126 // CR-only line endings. Why did they bother making the class
Chris@283 127 // cope with more than one sort of line ending, if it still
Chris@283 128 // can't be configured to cope with all the common sorts?
Chris@148 129
Chris@283 130 // For the time being we'll deal with this case (which is
Chris@283 131 // relatively uncommon for us, but still necessary to handle)
Chris@283 132 // by reading the entire file using a single readLine, and
Chris@283 133 // splitting it. For CR and CR/LF line endings this will just
Chris@283 134 // read a line at a time, and that's obviously OK.
Chris@148 135
Chris@283 136 QString chunk = in.readLine();
Chris@283 137 QStringList lines = chunk.split('\r', QString::SkipEmptyParts);
Chris@283 138
Chris@283 139 for (size_t li = 0; li < lines.size(); ++li) {
Chris@148 140
Chris@283 141 QString line = lines[li];
Chris@148 142
Chris@283 143 if (line.startsWith("#")) continue;
Chris@283 144
Chris@390 145 QStringList list = line.split(separator, behaviour);
Chris@283 146
Chris@283 147 if (!model) {
Chris@283 148
Chris@283 149 switch (modelType) {
Chris@283 150
Chris@392 151 case CSVFormat::OneDimensionalModel:
Chris@283 152 model1 = new SparseOneDimensionalModel(sampleRate, windowSize);
Chris@283 153 model = model1;
Chris@283 154 break;
Chris@148 155
Chris@392 156 case CSVFormat::TwoDimensionalModel:
Chris@283 157 model2 = new SparseTimeValueModel(sampleRate, windowSize, false);
Chris@283 158 model = model2;
Chris@283 159 break;
Chris@148 160
Chris@392 161 case CSVFormat::ThreeDimensionalModel:
Chris@535 162 model3 = new EditableDenseThreeDimensionalModel
Chris@535 163 (sampleRate,
Chris@535 164 windowSize,
Chris@535 165 list.size(),
Chris@535 166 EditableDenseThreeDimensionalModel::NoCompression);
Chris@283 167 model = model3;
Chris@283 168 break;
Chris@283 169 }
Chris@283 170 }
Chris@148 171
Chris@283 172 QStringList tidyList;
Chris@390 173 QRegExp nonNumericRx("[^0-9eE.,+-]");
Chris@148 174
Chris@283 175 for (int i = 0; i < list.size(); ++i) {
Chris@148 176
Chris@283 177 QString s(list[i].trimmed());
Chris@148 178
Chris@283 179 if (s.length() >= 2 && s.startsWith("\"") && s.endsWith("\"")) {
Chris@283 180 s = s.mid(1, s.length() - 2);
Chris@283 181 } else if (s.length() >= 2 && s.startsWith("'") && s.endsWith("'")) {
Chris@283 182 s = s.mid(1, s.length() - 2);
Chris@283 183 }
Chris@148 184
Chris@392 185 if (i == 0 && timingType == CSVFormat::ExplicitTiming) {
Chris@148 186
Chris@283 187 bool ok = false;
Chris@283 188 QString numeric = s;
Chris@283 189 numeric.remove(nonNumericRx);
Chris@148 190
Chris@392 191 if (timeUnits == CSVFormat::TimeSeconds) {
Chris@148 192
Chris@283 193 double time = numeric.toDouble(&ok);
Chris@491 194 frameNo = int(time * sampleRate + 0.5);
Chris@148 195
Chris@283 196 } else {
Chris@148 197
Chris@283 198 frameNo = numeric.toInt(&ok);
Chris@148 199
Chris@392 200 if (timeUnits == CSVFormat::TimeWindows) {
Chris@283 201 frameNo *= windowSize;
Chris@283 202 }
Chris@283 203 }
Chris@148 204
Chris@283 205 if (!ok) {
Chris@283 206 if (warnings < warnLimit) {
Chris@283 207 std::cerr << "WARNING: CSVFileReader::load: "
Chris@283 208 << "Bad time format (\"" << s.toStdString()
Chris@283 209 << "\") in data line "
Chris@491 210 << lineno+1 << ":" << std::endl;
Chris@283 211 std::cerr << line.toStdString() << std::endl;
Chris@283 212 } else if (warnings == warnLimit) {
Chris@283 213 std::cerr << "WARNING: Too many warnings" << std::endl;
Chris@283 214 }
Chris@283 215 ++warnings;
Chris@283 216 }
Chris@283 217 } else {
Chris@283 218 tidyList.push_back(s);
Chris@283 219 }
Chris@283 220 }
Chris@148 221
Chris@392 222 if (modelType == CSVFormat::OneDimensionalModel) {
Chris@148 223
Chris@283 224 SparseOneDimensionalModel::Point point
Chris@283 225 (frameNo,
Chris@283 226 tidyList.size() > 0 ? tidyList[tidyList.size()-1] :
Chris@491 227 QString("%1").arg(lineno+1));
Chris@148 228
Chris@283 229 model1->addPoint(point);
Chris@148 230
Chris@392 231 } else if (modelType == CSVFormat::TwoDimensionalModel) {
Chris@148 232
Chris@283 233 SparseTimeValueModel::Point point
Chris@283 234 (frameNo,
Chris@283 235 tidyList.size() > 0 ? tidyList[0].toFloat() : 0.0,
Chris@491 236 tidyList.size() > 1 ? tidyList[1] : QString("%1").arg(lineno+1));
Chris@148 237
Chris@283 238 model2->addPoint(point);
Chris@148 239
Chris@392 240 } else if (modelType == CSVFormat::ThreeDimensionalModel) {
Chris@148 241
Chris@283 242 DenseThreeDimensionalModel::Column values;
Chris@148 243
Chris@283 244 for (int i = 0; i < tidyList.size(); ++i) {
Chris@148 245
Chris@283 246 bool ok = false;
Chris@283 247 float value = list[i].toFloat(&ok);
Chris@283 248 values.push_back(value);
Chris@148 249
Chris@283 250 if ((lineno == 0 && i == 0) || value < min) min = value;
Chris@283 251 if ((lineno == 0 && i == 0) || value > max) max = value;
Chris@148 252
Chris@283 253 if (!ok) {
Chris@283 254 if (warnings < warnLimit) {
Chris@283 255 std::cerr << "WARNING: CSVFileReader::load: "
Chris@390 256 << "Non-numeric value \""
Chris@390 257 << list[i].toStdString()
Chris@491 258 << "\" in data line " << lineno+1
Chris@283 259 << ":" << std::endl;
Chris@283 260 std::cerr << line.toStdString() << std::endl;
Chris@283 261 ++warnings;
Chris@283 262 } else if (warnings == warnLimit) {
Chris@390 263 // std::cerr << "WARNING: Too many warnings" << std::endl;
Chris@283 264 }
Chris@283 265 }
Chris@283 266 }
Chris@148 267
Chris@390 268 // std::cerr << "Setting bin values for count " << lineno << ", frame "
Chris@390 269 // << frameNo << ", time " << RealTime::frame2RealTime(frameNo, sampleRate) << std::endl;
Chris@148 270
Chris@283 271 model3->setColumn(frameNo / model3->getResolution(), values);
Chris@283 272 }
Chris@148 273
Chris@283 274 ++lineno;
Chris@392 275 if (timingType == CSVFormat::ImplicitTiming ||
Chris@283 276 list.size() == 0) {
Chris@283 277 frameNo += windowSize;
Chris@283 278 }
Chris@283 279 }
Chris@148 280 }
Chris@148 281
Chris@392 282 if (modelType == CSVFormat::ThreeDimensionalModel) {
Chris@148 283 model3->setMinimumLevel(min);
Chris@148 284 model3->setMaximumLevel(max);
Chris@148 285 }
Chris@148 286
Chris@148 287 return model;
Chris@148 288 }
Chris@148 289