diff src/fftw-3.3.3/mpi/transpose-alltoall.c @ 95:89f5e221ed7b

Add FFTW3

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/src/fftw-3.3.3/mpi/transpose-alltoall.c	Wed Mar 20 15:35:50 2013 +0000
@@ -0,0 +1,265 @@
+/*
+ * Copyright (c) 2003, 2007-11 Matteo Frigo
+ * Copyright (c) 2003, 2007-11 Massachusetts Institute of Technology
+ *
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 2 of the License, or
+ * (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301  USA
+ *
+ */
+
+/* plans for distributed out-of-place transpose using MPI_Alltoall,
+   and which destroy the input array (unless TRANSPOSED_IN is used) */
+
+#include "mpi-transpose.h"
+#include <string.h>
+
+typedef struct {
+     solver super;
+     int copy_transposed_in; /* whether to copy the input for TRANSPOSED_IN,
+				which makes the final transpose out-of-place
+				but costs an extra copy and requires us
+				to destroy the input */
+} S;
+
+typedef struct {
+     plan_mpi_transpose super;
+
+     plan *cld1, *cld2, *cld2rest, *cld3;
+
+     MPI_Comm comm;
+     int *send_block_sizes, *send_block_offsets;
+     int *recv_block_sizes, *recv_block_offsets;
+
+     INT rest_Ioff, rest_Ooff;
+
+     int equal_blocks;
+} P;
+
+static void apply(const plan *ego_, R *I, R *O)
+{
+     const P *ego = (const P *) ego_;
+     plan_rdft *cld1, *cld2, *cld2rest, *cld3;
+
+     /* transpose locally to get contiguous chunks */
+     cld1 = (plan_rdft *) ego->cld1;
+     if (cld1) {
+	  cld1->apply(ego->cld1, I, O);
+	  
+	  /* transpose chunks globally */
+	  if (ego->equal_blocks)
+	       MPI_Alltoall(O, ego->send_block_sizes[0], FFTW_MPI_TYPE,
+			    I, ego->recv_block_sizes[0], FFTW_MPI_TYPE,
+			    ego->comm);
+	  else
+	       MPI_Alltoallv(O, ego->send_block_sizes, ego->send_block_offsets,
+			     FFTW_MPI_TYPE,
+			     I, ego->recv_block_sizes, ego->recv_block_offsets,
+			     FFTW_MPI_TYPE,
+			     ego->comm);
+     }
+     else { /* TRANSPOSED_IN, no need to destroy input */
+	  /* transpose chunks globally */
+	  if (ego->equal_blocks)
+	       MPI_Alltoall(I, ego->send_block_sizes[0], FFTW_MPI_TYPE,
+			    O, ego->recv_block_sizes[0], FFTW_MPI_TYPE,
+			    ego->comm);
+	  else
+	       MPI_Alltoallv(I, ego->send_block_sizes, ego->send_block_offsets,
+			     FFTW_MPI_TYPE,
+			     O, ego->recv_block_sizes, ego->recv_block_offsets,
+			     FFTW_MPI_TYPE,
+			     ego->comm);
+	  I = O; /* final transpose (if any) is in-place */
+     }
+     
+     /* transpose locally, again, to get ordinary row-major */
+     cld2 = (plan_rdft *) ego->cld2;
+     if (cld2) {
+	  cld2->apply(ego->cld2, I, O);
+	  cld2rest = (plan_rdft *) ego->cld2rest;
+	  if (cld2rest) { /* leftover from unequal block sizes */
+	       cld2rest->apply(ego->cld2rest,
+			       I + ego->rest_Ioff, O + ego->rest_Ooff);
+	       cld3 = (plan_rdft *) ego->cld3;
+	       if (cld3)
+		    cld3->apply(ego->cld3, O, O);
+	       /* else TRANSPOSED_OUT is true and user wants O transposed */
+	  }
+     }
+}
+
+static int applicable(const S *ego, const problem *p_,
+		      const planner *plnr)
+{
+     const problem_mpi_transpose *p = (const problem_mpi_transpose *) p_;
+     return (1
+	     && p->I != p->O
+	     && (!NO_DESTROY_INPUTP(plnr) || 
+		 ((p->flags & TRANSPOSED_IN) && !ego->copy_transposed_in))
+	     && ((p->flags & TRANSPOSED_IN) || !ego->copy_transposed_in)
+	     && ONLY_TRANSPOSEDP(p->flags)
+	  );
+}
+
+static void awake(plan *ego_, enum wakefulness wakefulness)
+{
+     P *ego = (P *) ego_;
+     X(plan_awake)(ego->cld1, wakefulness);
+     X(plan_awake)(ego->cld2, wakefulness);
+     X(plan_awake)(ego->cld2rest, wakefulness);
+     X(plan_awake)(ego->cld3, wakefulness);
+}
+
+static void destroy(plan *ego_)
+{
+     P *ego = (P *) ego_;
+     X(ifree0)(ego->send_block_sizes);
+     MPI_Comm_free(&ego->comm);
+     X(plan_destroy_internal)(ego->cld3);
+     X(plan_destroy_internal)(ego->cld2rest);
+     X(plan_destroy_internal)(ego->cld2);
+     X(plan_destroy_internal)(ego->cld1);
+}
+
+static void print(const plan *ego_, printer *p)
+{
+     const P *ego = (const P *) ego_;
+     p->print(p, "(mpi-transpose-alltoall%s%(%p%)%(%p%)%(%p%)%(%p%))",
+	      ego->equal_blocks ? "/e" : "",
+	      ego->cld1, ego->cld2, ego->cld2rest, ego->cld3);
+}
+
+static plan *mkplan(const solver *ego_, const problem *p_, planner *plnr)
+{
+     const S *ego = (const S *) ego_;
+     const problem_mpi_transpose *p;
+     P *pln;
+     plan *cld1 = 0, *cld2 = 0, *cld2rest = 0, *cld3 = 0;
+     INT b, bt, vn, rest_Ioff, rest_Ooff;
+     R *I;
+     int *sbs, *sbo, *rbs, *rbo;
+     int pe, my_pe, n_pes;
+     int equal_blocks = 1;
+     static const plan_adt padt = {
+          XM(transpose_solve), awake, print, destroy
+     };
+
+     if (!applicable(ego, p_, plnr))
+          return (plan *) 0;
+
+     p = (const problem_mpi_transpose *) p_;
+     vn = p->vn;
+
+     MPI_Comm_rank(p->comm, &my_pe);
+     MPI_Comm_size(p->comm, &n_pes);
+
+     b = XM(block)(p->nx, p->block, my_pe);
+
+     if (p->flags & TRANSPOSED_IN) { /* I is already transposed */
+	  if (ego->copy_transposed_in) {
+	       cld1 = X(mkplan_f_d)(plnr,
+				  X(mkproblem_rdft_0_d)(X(mktensor_1d)
+							(b * p->ny * vn, 1, 1),
+							I = p->I, p->O),
+				    0, 0, NO_SLOW);
+	       if (XM(any_true)(!cld1, p->comm)) goto nada;
+	  }
+	  else
+	       I = p->O; /* final transpose is in-place */
+     }
+     else { /* transpose b x ny x vn -> ny x b x vn */
+	  cld1 = X(mkplan_f_d)(plnr, 
+			       X(mkproblem_rdft_0_d)(X(mktensor_3d)
+						     (b, p->ny * vn, vn,
+						      p->ny, vn, b * vn,
+						      vn, 1, 1),
+						     I = p->I, p->O),
+			       0, 0, NO_SLOW);
+	  if (XM(any_true)(!cld1, p->comm)) goto nada;
+     }
+	  
+     if (XM(any_true)(!XM(mkplans_posttranspose)(p, plnr, I, p->O, my_pe,
+						 &cld2, &cld2rest, &cld3,
+						 &rest_Ioff, &rest_Ooff),
+		      p->comm)) goto nada;
+
+     pln = MKPLAN_MPI_TRANSPOSE(P, &padt, apply);
+
+     pln->cld1 = cld1;
+     pln->cld2 = cld2;
+     pln->cld2rest = cld2rest;
+     pln->rest_Ioff = rest_Ioff;
+     pln->rest_Ooff = rest_Ooff;
+     pln->cld3 = cld3;
+
+     MPI_Comm_dup(p->comm, &pln->comm);
+
+     /* Compute sizes/offsets of blocks to send for all-to-all command. */
+     sbs = (int *) MALLOC(4 * n_pes * sizeof(int), PLANS);
+     sbo = sbs + n_pes;
+     rbs = sbo + n_pes;
+     rbo = rbs + n_pes;
+     b = XM(block)(p->nx, p->block, my_pe);
+     bt = XM(block)(p->ny, p->tblock, my_pe);
+     for (pe = 0; pe < n_pes; ++pe) {
+	  INT db, dbt; /* destination block sizes */
+	  db = XM(block)(p->nx, p->block, pe);
+	  dbt = XM(block)(p->ny, p->tblock, pe);
+	  if (db != p->block || dbt != p->tblock)
+	       equal_blocks = 0;
+
+	  /* MPI requires type "int" here; apparently it
+	     has no 64-bit API?  Grrr. */
+	  sbs[pe] = (int) (b * dbt * vn);
+	  sbo[pe] = (int) (pe * (b * p->tblock) * vn);
+	  rbs[pe] = (int) (db * bt * vn);
+	  rbo[pe] = (int) (pe * (p->block * bt) * vn);
+     }
+     pln->send_block_sizes = sbs;
+     pln->send_block_offsets = sbo;
+     pln->recv_block_sizes = rbs;
+     pln->recv_block_offsets = rbo;
+     pln->equal_blocks = equal_blocks;
+
+     X(ops_zero)(&pln->super.super.ops);
+     if (cld1) X(ops_add2)(&cld1->ops, &pln->super.super.ops);
+     if (cld2) X(ops_add2)(&cld2->ops, &pln->super.super.ops);
+     if (cld2rest) X(ops_add2)(&cld2rest->ops, &pln->super.super.ops);
+     if (cld3) X(ops_add2)(&cld3->ops, &pln->super.super.ops);
+     /* FIXME: should MPI operations be counted in "other" somehow? */
+
+     return &(pln->super.super);
+
+ nada:
+     X(plan_destroy_internal)(cld3);
+     X(plan_destroy_internal)(cld2rest);
+     X(plan_destroy_internal)(cld2);
+     X(plan_destroy_internal)(cld1);
+     return (plan *) 0;
+}
+
+static solver *mksolver(int copy_transposed_in)
+{
+     static const solver_adt sadt = { PROBLEM_MPI_TRANSPOSE, mkplan, 0 };
+     S *slv = MKSOLVER(S, &sadt);
+     slv->copy_transposed_in = copy_transposed_in;
+     return &(slv->super);
+}
+
+void XM(transpose_alltoall_register)(planner *p)
+{
+     int cti;
+     for (cti = 0; cti <= 1; ++cti)
+	  REGISTER_SOLVER(p, mksolver(cti));
+}