# HG changeset patch
# User Chris Cannam
# Date 1317042792 -3600
# Node ID e2a10580dedf93e4f1f12448cbd0f5f103233187
# Parent  69bd20e39aabf446ab231357460e3d9104aa987f# Parent  cd47c9102d5c1c1abe9b1a8e9ecd81e2284326e1
Merge

diff -r 69bd20e39aab -r e2a10580dedf cannam.tex
--- a/cannam.tex	Mon Sep 26 14:10:56 2011 +0100
+++ b/cannam.tex	Mon Sep 26 14:13:12 2011 +0100
@@ -42,9 +42,6 @@
 describe the Sound Software project, an effort to improve software
 practice in the UK audio and music research community.
 
-
-TODO: Replace all [citation needed] with citations!
-
 \end{abstract}
 %
 \begin{keywords}
@@ -99,9 +96,9 @@
 
 Recent years have seen some moves to promote this philosophy across
 the signal processing research community. A special session was
-organised at ICASSP 2007 and special issues of IEEE Signal Processing
+organised at ICASSP 2007~\cite{kovacevic2007} and special issues of IEEE Signal Processing
 Magazine~\cite{vandewalle2009} and Computing in Science and
-Engineering [citation needed] on this subject both appeared in
+Engineering~\cite{stodden2009} on this subject both appeared in
 2009. The IEEE Signal Processing society now encourages Reproducible
 Research, allowing links from the online journal repository IEEE Xplore
 to the code and data associated with a publication (TODO: check this).
@@ -150,10 +147,11 @@
 Our respondents cited as obstacles to the publication of code lack of
 time, copyright restrictions, and the potential for future commercial
 use. A broader study into science research across several subject
-areas by the UK Research Information Network \cite{rin2010}
+areas by the UK Research Information Network~\cite{rin2010}
 additionally identified lack of evidence of benefits, cultures of
 independence and competition, and quality concerns as typical
-inhibiting factors for open sharing of data and code.
+inhibiting factors for open sharing of data and code. Similar issues
+are also mentioned in~\cite{barnes2010}.
 
 Besides these practical obstacles, undertaking reproducible research
 takes effort early in the research cycle.  This happens before the
diff -r 69bd20e39aab -r e2a10580dedf refs.bib
--- a/refs.bib	Mon Sep 26 14:10:56 2011 +0100
+++ b/refs.bib	Mon Sep 26 14:13:12 2011 +0100
@@ -212,3 +212,44 @@
 year = 2011,
 howpublished = {http://code.soundsoftware.ac.uk/documents/19},
 }
+@article{kovacevic2007,
+abstract = {I discuss the what, why and how or reproducible research, a concept that emerged recently in computational sciences. It refers to the idea that the ultimate product is not a published paper only, but the data, software and everything else needed to produce that paper. In signal processing, the discussion just started, and this paper attempts to add to the current efforts of bringing the issue to the forefront and looking for solutions to make it happen.},
+author = {Kovacevic, J.},
+doi = {10.1109/ICASSP.2007.367309},
+isbn = {1424407273},
+issn = {15206149},
+journal = {Computer Engineering},
+pages = {1273--1276},
+publisher = {Ieee},
+series = {International Conference on Acoustics Speech and Signal Processing (ICASSP)},
+title = {{How to encourage and publish reproducible research}},
+url = {http://ieeexplore.ieee.org/lpdocs/epic03/wrapper.htm?arnumber=4218340},
+volume = {4},
+year = {2007}
+}
+@article{Stodden2009,
+author = {Stodden, V},
+doi = {10.1109/MCSE.2009.19},
+issn = {15219615},
+journal = {Computing in Science Engineering},
+number = {1},
+pages = {35--40},
+pmid = {4720221},
+publisher = {IEEE Computer Society},
+title = {{The Legal Framework for Reproducible Scientific Research: Licensing and Copyright}},
+url = {http://ieeexplore.ieee.org/lpdocs/epic03/wrapper.htm?arnumber=4720221},
+volume = {11},
+year = {2009}
+}
+@article{barnes2010,
+author = {Barnes, N.},
+journal = {Nature},
+number = {7317},
+pages = {753},
+pmid = {20944687},
+publisher = {Nature Publishing Group},
+title = {{Publish your computer code: it is good enough.}},
+url = {http://www.ncbi.nlm.nih.gov/pubmed/20944687},
+volume = {467},
+year = {2010}
+}