Mercurial > hg > plosone_underreview
comparison notebooks/test_hubness.ipynb @ 18:ed109218dd4b branch-tests
rename result scripts and more tests
author | Maria Panteli |
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date | Tue, 12 Sep 2017 23:18:19 +0100 |
parents | ff18f364bbac |
children | 29b5ee381305 bd284065aeb6 |
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17:2e487b9c0a7b | 18:ed109218dd4b |
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17 "\n", | 17 "\n", |
18 "%load_ext autoreload\n", | 18 "%load_ext autoreload\n", |
19 "%autoreload 2\n", | 19 "%autoreload 2\n", |
20 "\n", | 20 "\n", |
21 "sys.path.append('../')\n", | 21 "sys.path.append('../')\n", |
22 "import scripts.results as results\n", | 22 "import scripts.outliers as outliers\n", |
23 "import scripts.utils_spatial as utils_spatial" | 23 "import scripts.utils_spatial as utils_spatial" |
24 ] | 24 ] |
25 }, | 25 }, |
26 { | 26 { |
27 "cell_type": "code", | 27 "cell_type": "code", |
66 ] | 66 ] |
67 } | 67 } |
68 ], | 68 ], |
69 "source": [ | 69 "source": [ |
70 "X_list, Y, Yaudio = pickle.load(open('../data/lda_data_melodia_8.pickle','rb'))\n", | 70 "X_list, Y, Yaudio = pickle.load(open('../data/lda_data_melodia_8.pickle','rb'))\n", |
71 "ddf = results.load_metadata(Yaudio, metadata_file='../data/metadata.csv')\n", | 71 "ddf = outliers.load_metadata(Yaudio, metadata_file='../data/metadata.csv')\n", |
72 "w, data_countries = utils_spatial.get_neighbors_for_countries_in_dataset(Y)\n", | 72 "w, data_countries = utils_spatial.get_neighbors_for_countries_in_dataset(Y)\n", |
73 "w_dict = utils_spatial.from_weights_to_dict(w, data_countries)\n", | 73 "w_dict = utils_spatial.from_weights_to_dict(w, data_countries)\n", |
74 "Xrhy, Xmel, Xmfc, Xchr = X_list\n", | 74 "Xrhy, Xmel, Xmfc, Xchr = X_list\n", |
75 "X = np.concatenate((Xrhy, Xmel, Xmfc, Xchr), axis=1)\n", | 75 "X = np.concatenate((Xrhy, Xmel, Xmfc, Xchr), axis=1)\n", |
76 "\n", | 76 "\n", |
77 "# global outliers\n", | 77 "# global outliers\n", |
78 "df_global, threshold, MD = results.get_outliers_df(X, Y, chi2thr=0.999)" | 78 "df_global, threshold, MD = outliers.get_outliers_df(X, Y, chi2thr=0.999)" |
79 ] | 79 ] |
80 }, | 80 }, |
81 { | 81 { |
82 "cell_type": "code", | 82 "cell_type": "code", |
83 "execution_count": 3, | 83 "execution_count": 3, |