# HG changeset patch
# User Chris Cannam
# Date 1335264725 -3600
# Node ID 4182672fd6f89bb88633dc99056107885649ad55

Initial commit of files from the mauch-MIREX directory on octave

diff -r 000000000000 -r 4182672fd6f8 .hgignore
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/.hgignore	Tue Apr 24 11:52:05 2012 +0100
@@ -0,0 +1,15 @@
+syntax: glob
+_beattracker
+_chordtools
+_chroma
+_chromadata
+_dbn
+_FullBNT
+_logfiles
+_misc
+_parameters
+_segmentation
+_song
+_writetools
+output
+output_*
diff -r 000000000000 -r 4182672fd6f8 README
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/README	Tue Apr 24 11:52:05 2012 +0100
@@ -0,0 +1,48 @@
+Matthias Mauch MIREX Submissions 2010
+=====================================
+
+This README file contains instructions to run three different methods:
+
+1) chord estimation with a DBN (doChordID.sh)
+2) simple chord estimation (doChordID-simple.sh)
+3) structural segmentation (doSegmentation.sh)
+
+Each method is called through the respective bash script.
+
+All methods use Sonic Annotator. A Sonic Annotator binary for 64bit Linux is in this directory. Please contact me (mail@matthiasmauch.net) or Chris Cannam (chris.cannam@eecs.qmul.ac.uk) if you need a different version. 
+
+All methods use just one core, as far as I'm aware. Whatever MATLAB does implicitly I don't know.
+
+Please find more detailed information on the individual methods below.
+
+1. Chord Estimation with a DBN
+------------------------------
+
+Example call to the bash shell script "doChordID.sh":
+
+  ./doChordID.sh wavfilelist.txt outputdirectory
+
+This method requires MATLAB.  
+This method uses a lot of memory (expected up to 17GB for long songs). 
+Expected running time is roughly real-time for most songs +/- 40%.
+
+2. Simple Chord Estimation
+---------------------------
+
+Example call to the bash shell script "doChordID-simple.sh":
+  
+  ./doChordID-simple.sh wavfilelist.txt outputdirectory
+  
+No special memory requirements.
+This method is quite quick, takes roughly a third of the real duration.
+
+3. Structural Segmentation
+--------------------------
+
+Example call to the bash shell script "doSegmentation.sh":
+
+  ./doSegmentation.sh wavfilelist.txt outputdirectory
+
+This method requires MATLAB.  
+No special memory requirements.
+This method is quicker than real-time, takes roughly 70% of the real duration.
\ No newline at end of file
diff -r 000000000000 -r 4182672fd6f8 chord.dict
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/chord.dict	Tue Apr 24 11:52:05 2012 +0100
@@ -0,0 +1,21 @@
+### Comma-Separated Chord Dictionaries
+# 
+# field 1 is chord type name,
+# fields 2-25 indicate whether a pitch class is present (1) or not (0) =
+#   - fields 2-13 correspond to bass pitch classes A through Ab
+#   - fields 14-25 correspond to chord pitch classes A through Ab
+
+### Advanced Learners Chord Dictionary
+=1,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,1,0,0,1,0,0,0,0
+=0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,1,0,0,1,0,0,0,0
+:min=1,0,0,0,0,0,0,0,0,0,0,0,1,0,0,1,0,0,0,1,0,0,0,0
+:min=0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,1,0,0,0,1,0,0,0,0
+:dim7=1,0,0,0,0,0,0,0,0,0,0,0,1,0,0,1,0,0,1,0,0,0,1,0
+:maj6=1,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,1,0,0,1,0,1,0,0
+:7=1,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,1,0,0,1,0,0,1,0
+:maj7=1,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,1,0,0,1,0,0,0,1
+:min7=1,0,0,0,0,0,0,0,0,0,0,0,1,0,0,1,0,0,0,1,0,0,1,0
+=0,0,0,0,1,0,0,0,0,0,0,0,1,0,0,0,1,0,0,1,0,0,0,0
+=0,0,0,0,0,0,0,1,0,0,0,0,1,0,0,0,1,0,0,1,0,0,0,0
+:dim=1,0,0,0,0,0,0,0,0,0,0,0,1,0,0,1,0,0,1,0,0,0,0,0
+:aug=1,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,1,0,0,0,1,0,0,0
\ No newline at end of file
diff -r 000000000000 -r 4182672fd6f8 common_startstring.sh
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/common_startstring.sh	Tue Apr 24 11:52:05 2012 +0100
@@ -0,0 +1,10 @@
+#!/bin/bash
+filelist="$1"
+common_st="`head -n 1 "$filelist"`"first
+
+while read f; do
+	diff_pos=`./diff_position.sh "$common_st" "$f"`
+	last_same=$(( $diff_pos-1 ))
+	common_st="`echo "$common_st" | cut -c 1-$last_same`"
+done < "$filelist"
+echo "$common_st"
diff -r 000000000000 -r 4182672fd6f8 diff_position.sh
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/diff_position.sh	Tue Apr 24 11:52:05 2012 +0100
@@ -0,0 +1,4 @@
+#!/bin/bash
+
+cmp -l  <(echo "$1" ) <(echo "$2") 2> /dev/null | head -n1 | awk '{ print $1 }'
+
diff -r 000000000000 -r 4182672fd6f8 doChordID-osx.sh
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/doChordID-osx.sh	Tue Apr 24 11:52:05 2012 +0100
@@ -0,0 +1,51 @@
+#!/bin/bash
+
+if [ $# -lt 2 ] ; then
+echo "Usage: $0 [-s] LISTFILENAME OUTPUTDIR"
+exit 1
+fi
+
+retainstructure=0
+
+while [ $# -gt 2 ] ; do
+case $1 in
+-d) retainstructure=1 ; shift 1 ; echo here;;
+*) shift 1 ;;
+esac
+done
+
+listfile="$1"
+echo listfile "$listfile"
+outputdir="$2"
+
+
+while read infile; do
+	if [ "$infile" -a -f "$infile" ]; then
+		before="$(date +%s)"
+		echo "_____________________________________________________"
+		echo " "
+		echo Processing file "$infile"
+		echo " "
+		if [ $retainstructure -eq 0 ]; then
+			pathandfile=`basename "$infile"`
+		else
+			pathandfile="`echo "$infile" | egrep -o '[^/]*/[^/]*/[^/]*$'`"
+			echo pathandfile "$pathandfile"
+		fi
+		outfile="$outputdir"/"$pathandfile".txt
+		
+		logfile=_logfiles/"$pathandfile".log
+		chromafile=_chromadata/"$pathandfile".csv
+		
+		mkdir -p "`dirname "$outfile"`"
+		
+		echo "[sonic annotator] ..."
+		VAMP_PATH=. ./sonic-annotator -d vamp:matthiasm:nnls_chroma:bothchroma -w csv --csv-stdout "$infile" 2> "$logfile" | cut -d ',' -f 2-  > "$chromafile" 
+		matlab -nodisplay -nojvm -r run_mirex\(\'"$infile"\',\'"$outfile"\'\,\'"$chromafile"\'\) >> $logfile
+		after="$(date +%s)"
+		elapsed_seconds="$(expr $after - $before)"
+		echo "  -->" time elapsed: $elapsed_seconds seconds
+		echo " "
+	else if [ ! "$infile" ]; then echo ...; fi
+	fi		
+done < "$listfile"
diff -r 000000000000 -r 4182672fd6f8 doChordID-simple-osx.sh
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/doChordID-simple-osx.sh	Tue Apr 24 11:52:05 2012 +0100
@@ -0,0 +1,60 @@
+#!/bin/bash
+
+if [ $# -lt 2 ] ; then
+echo "Usage: $0 [-s] LISTFILENAME OUTPUTDIR"
+exit 1
+fi
+
+retainstructure=0
+
+while [ $# -gt 2 ] ; do
+case $1 in
+-d) retainstructure=1 ; shift 1 ; echo here;;
+*) shift 1 ;;
+esac
+done
+
+listfile="$1"
+echo listfile "$listfile"
+outputdir="$2"
+
+
+while read infile; do
+	if [ "$infile" -a -f "$infile" ]; then
+		before="$(date +%s)"
+		echo "_____________________________________________________"
+		echo " "
+		echo Processing file "$infile"
+		echo " "
+		if [ $retainstructure -eq 0 ]; then
+			pathandfile=`basename "$infile"`
+		else
+			pathandfile="`echo "$infile" | egrep -o '[^/]*/[^/]*/[^/]*$'`"
+			echo pathandfile "$pathandfile"
+		fi
+		outfile="$outputdir"/"$pathandfile".txt
+		
+		logfile=_logfiles/"$pathandfile".log
+		chromafile=_chromadata/"$pathandfile".csv
+		
+		mkdir -p "`dirname "$outfile"`"
+		
+		echo "[sonic annotator] ..."
+		helper=n		
+		VAMP_PATH=. ./sonic-annotator -d vamp:matthiasm:nnls_chroma:simplechord -w csv --csv-stdout "$infile" | cut -d ',' -f 2- |
+		while read line; do			
+			# echo "$line"
+			if [ $helper = y ]; then
+				echo "$oldstart" `echo "$line" | cut -d ',' -f 1` "$oldchord"
+			fi
+			oldstart=`echo "$line" | cut -d ',' -f 1`
+			oldchord=`echo "$line" | cut -d ',' -f 2 | sed 's/"//g'`
+			helper=y
+		done > "$outfile"
+		after="$(date +%s)"
+		elapsed_seconds="$(expr $after - $before)"
+		echo "  -->" time elapsed: $elapsed_seconds seconds
+		echo " "
+	else if [ ! "$infile" ]; then echo ...; fi
+	fi		
+done < "$listfile"
diff -r 000000000000 -r 4182672fd6f8 doChordID-simple.sh
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/doChordID-simple.sh	Tue Apr 24 11:52:05 2012 +0100
@@ -0,0 +1,60 @@
+#!/bin/bash
+
+if [ $# -lt 2 ] ; then
+echo "Usage: $0 [-s] LISTFILENAME OUTPUTDIR"
+exit 1
+fi
+
+retainstructure=0
+
+while [ $# -gt 2 ] ; do
+case $1 in
+-d) retainstructure=1 ; shift 1 ; echo here;;
+*) shift 1 ;;
+esac
+done
+
+listfile="$1"
+echo listfile "$listfile"
+outputdir="$2"
+
+
+while read infile; do
+	if [ "$infile" -a -f "$infile" ]; then
+		before="$(date +%s)"
+		echo "_____________________________________________________"
+		echo " "
+		echo Processing file "$infile"
+		echo " "
+		if [ $retainstructure -eq 0 ]; then
+			pathandfile=`basename "$infile"`
+		else
+			pathandfile="`echo "$infile" | egrep -o '[^/]*/[^/]*/[^/]*$'`"
+			echo pathandfile "$pathandfile"
+		fi
+		outfile="$outputdir"/"$pathandfile".txt
+		
+		logfile=_logfiles/"$pathandfile".log
+		chromafile=_chromadata/"$pathandfile".csv
+		
+		mkdir -p "`dirname "$outfile"`"
+		
+		echo "[sonic annotator] ..."
+		helper=n		
+		VAMP_PATH=. ./sonic-annotator-unix -d vamp:matthiasm:nnls_chroma:simplechord -w csv --csv-stdout "$infile" | cut -d ',' -f 2- |
+		while read line; do			
+			# echo "$line"
+			if [ $helper = y ]; then
+				echo "$oldstart" `echo "$line" | cut -d ',' -f 1` "$oldchord"
+			fi
+			oldstart=`echo "$line" | cut -d ',' -f 1`
+			oldchord=`echo "$line" | cut -d ',' -f 2 | sed 's/"//g'`
+			helper=y
+		done > "$outfile"
+		after="$(date +%s)"
+		elapsed_seconds="$(expr $after - $before)"
+		echo "  -->" time elapsed: $elapsed_seconds seconds
+		echo " "
+	else if [ ! "$infile" ]; then echo ...; fi
+	fi		
+done < "$listfile"
diff -r 000000000000 -r 4182672fd6f8 doChordID.sh
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/doChordID.sh	Tue Apr 24 11:52:05 2012 +0100
@@ -0,0 +1,54 @@
+#!/bin/bash
+
+if [ $# -lt 2 ] ; then
+echo "Usage: $0 [-s] LISTFILENAME OUTPUTDIR"
+exit 1
+fi
+
+retainstructure=0
+
+while [ $# -gt 2 ] ; do
+case $1 in
+-d) retainstructure=1 ; shift 1 ; echo here;;
+*) shift 1 ;;
+esac
+done
+
+listfile="$1"
+echo listfile "$listfile"
+outputdir="$2"
+
+
+while read infile; do
+	if [ "$infile" -a -f "$infile" ]; then
+		before="$(date +%s)"
+		echo "_____________________________________________________"
+		echo " "
+		echo Processing file "$infile"
+		echo " "
+		if [ $retainstructure -eq 0 ]; then
+			pathandfile=`basename "$infile"`
+		else
+			pathandfile="`echo "$infile" | egrep -o '[^/]*/[^/]*/[^/]*$'`"
+			echo pathandfile "$pathandfile"
+		fi
+		outfile="$outputdir"/"$pathandfile".txt
+		
+		logfile=_logfiles/"$pathandfile".log
+		chromafile=_chromadata/"$pathandfile".csv
+		
+		mkdir -p "`dirname "$outfile"`"
+		
+		echo "[sonic annotator] ..."
+		VAMP_PATH=. ./sonic-annotator-unix -d vamp:matthiasm:nnls_chroma:bothchroma -w csv --csv-stdout "$infile" 2> "$logfile" | cut -d ',' -f 2-  > "$chromafile" 
+		infile="`echo "$infile" | sed "s/'/''/g"`"
+		outfile="`echo "$outfile" | sed "s/'/''/g"`"
+		chromafile="`echo "$chromafile" | sed "s/'/''/g"`"		
+		matlab -nodisplay -nojvm -r run_mirex\(\'"$infile"\',\'"$outfile"\'\,\'"$chromafile"\'\) >> "$logfile"
+		after="$(date +%s)"
+		elapsed_seconds="$(expr $after - $before)"
+		echo "  -->" time elapsed: $elapsed_seconds seconds
+		echo " "
+	else if [ ! "$infile" ]; then echo ...; fi
+	fi		
+done < "$listfile"
diff -r 000000000000 -r 4182672fd6f8 doSegmentation-osx.sh
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/doSegmentation-osx.sh	Tue Apr 24 11:52:05 2012 +0100
@@ -0,0 +1,54 @@
+#!/bin/bash
+
+if [ $# -lt 2 ] ; then
+echo "Usage: $0 [-s] LISTFILENAME OUTPUTDIR"
+exit 1
+fi
+
+retainstructure=0
+
+while [ $# -gt 2 ] ; do
+case $1 in
+-d) retainstructure=1 ; shift 1 ; echo here;;
+*) shift 1 ;;
+esac
+done
+
+listfile="$1"
+echo listfile "$listfile"
+outputdir="$2"
+
+
+while read infile; do
+	if [ "$infile" -a -f "$infile" ]; then
+		before="$(date +%s)"
+		echo "_____________________________________________________"
+		echo " "
+		echo Processing file "$infile"
+		echo " "
+		if [ $retainstructure -eq 0 ]; then
+			pathandfile=`basename "$infile"`
+		else
+			pathandfile="`echo "$infile" | egrep -o '[^/]*/[^/]*/[^/]*$'`"
+			echo pathandfile "$pathandfile"
+		fi
+		outfile="$outputdir"/"$pathandfile".txt
+		
+		logfile=_logfiles/"$pathandfile".log
+		chromafile=_chromadata/"$pathandfile".csv
+		
+		mkdir -p "`dirname "$outfile"`"
+		
+		echo "[sonic annotator] ..."
+		VAMP_PATH=. ./sonic-annotator -d vamp:matthiasm:nnls_chroma:bothchroma -w csv --csv-stdout "$infile" 2> "$logfile" | cut -d ',' -f 2-  > "$chromafile" 
+		infile="`echo "$infile" | sed "s/'/''/g"`"
+		outfile="`echo "$outfile" | sed "s/'/''/g"`"
+		chromafile="`echo "$chromafile" | sed "s/'/''/g"`"		
+		matlab -nodisplay -nojvm -r run_segmentation\(\'"$infile"\',\'"$outfile"\'\,\'"$chromafile"\'\) >> "$logfile"
+		after="$(date +%s)"
+		elapsed_seconds="$(expr $after - $before)"
+		echo "  -->" time elapsed: $elapsed_seconds seconds
+		echo " "
+	else if [ ! "$infile" ]; then echo ...; fi
+	fi		
+done < "$listfile"
diff -r 000000000000 -r 4182672fd6f8 doSegmentation.sh
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/doSegmentation.sh	Tue Apr 24 11:52:05 2012 +0100
@@ -0,0 +1,54 @@
+#!/bin/bash
+
+if [ $# -lt 2 ] ; then
+echo "Usage: $0 [-s] LISTFILENAME OUTPUTDIR"
+exit 1
+fi
+
+retainstructure=0
+
+while [ $# -gt 2 ] ; do
+case $1 in
+-d) retainstructure=1 ; shift 1 ; echo here;;
+*) shift 1 ;;
+esac
+done
+
+listfile="$1"
+echo listfile "$listfile"
+outputdir="$2"
+
+
+while read infile; do
+	if [ "$infile" -a -f "$infile" ]; then
+		before="$(date +%s)"
+		echo "_____________________________________________________"
+		echo " "
+		echo Processing file "$infile"
+		echo " "
+		if [ $retainstructure -eq 0 ]; then
+			pathandfile=`basename "$infile"`
+		else
+			pathandfile="`echo "$infile" | egrep -o '[^/]*/[^/]*/[^/]*$'`"
+			echo pathandfile "$pathandfile"
+		fi
+		outfile="$outputdir"/"$pathandfile".txt
+		
+		logfile=_logfiles/"$pathandfile".log
+		chromafile=_chromadata/"$pathandfile".csv
+		
+		mkdir -p "`dirname "$outfile"`"
+		
+		echo "[sonic annotator] ..."
+		VAMP_PATH=. ./sonic-annotator-unix -d vamp:matthiasm:nnls_chroma:bothchroma -w csv --csv-stdout "$infile" 2> "$logfile" | cut -d ',' -f 2-  > "$chromafile" 
+		infile="`echo "$infile" | sed "s/'/''/g"`"
+		outfile="`echo "$outfile" | sed "s/'/''/g"`"
+		chromafile="`echo "$chromafile" | sed "s/'/''/g"`"		
+		matlab -nodisplay -nojvm -r run_segmentation\(\'"$infile"\',\'"$outfile"\'\,\'"$chromafile"\'\) >> "$logfile"
+		after="$(date +%s)"
+		elapsed_seconds="$(expr $after - $before)"
+		echo "  -->" time elapsed: $elapsed_seconds seconds
+		echo " "
+	else if [ ! "$infile" ]; then echo ...; fi
+	fi		
+done < "$listfile"
diff -r 000000000000 -r 4182672fd6f8 featurescript.sh
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/featurescript.sh	Tue Apr 24 11:52:05 2012 +0100
@@ -0,0 +1,109 @@
+#!/bin/bash
+
+base=/import/c4dm-music-a/C4DM\ Music\ Collection
+
+mine=`date '+%Y-%m-%d_%H.%M.%S'`_$$
+logfile="logs/$mine.log"
+statusfile="logs/$mine.status"
+matlogfile="logs/$mine.matlog"
+mkdir -p logs
+
+echo "base: $base"
+echo "log file to $logfile"
+echo "overall status reports to $statusfile"
+
+report_failure() {
+    echo "FAIL   $@" >> "$statusfile"
+}
+report_success() {
+    echo "WIN    $@" >> "$statusfile"
+}
+report_existing() {
+    echo "HAZ    $@" >> "$statusfile"
+}
+report_busy() {
+    echo "BUSY   $@" >> "$statusfile"
+}
+
+find "$base" -type d | while read source; do
+
+    ls "$source" | fgrep -q .wav || continue
+
+    echo "source: $source"
+    dirname=${source#$base}
+    dirname=${dirname#/}
+    echo "dirname: $dirname"
+    [ -n "$dirname" ] || continue
+
+    for wavfilename in "$source/"*.wav; do          # loop over songs
+
+	echo "$wavfilename"
+
+        songbasename=`basename "${wavfilename%.wav}"`
+        echo .................. new song "$dirname/$songbasename" .............
+        songdir="output/$dirname/$songbasename"                      # this is where all song-related features will go into
+        mkdir -p "$songdir"
+
+	( if ! flock -en 200; then
+	    echo "songdir $songdir is locked already, skipping it"
+	    report_busy "$wavfilename"
+	    exit
+	  fi
+
+	echo "have lock on songdir $songdir"
+
+	if [ -s "$songdir/$songbasename""_vamp_matthiasm_nnls_chroma_bothchroma.csv" ]; then
+	    echo "non-empty output file(s) exist -- not re-generating"
+ 	    report_existing "$wavfilename"
+	    exit
+	fi
+
+        echo oooooooooooooooooooooooooooooooooooooooooooooooo
+        echo low level feature extraction
+        echo oooooooooooooooooooooooooooooooooooooooooooooooo                
+        VAMP_PATH=. ./sonic-annotator-unix \
+                -d vamp:matthiasm:nnls_chroma:simplechord \
+                -d vamp:matthiasm:nnls_chroma:bothchroma \
+                -d vamp:matthiasm:nnls_chroma:localtuning \
+                -d vamp:matthiasm:nnls_chroma:logfreqspec \
+                -d vamp:matthiasm:nnls_chroma:semitonespectrum \
+                -d vamp:matthiasm:nnls_chroma:tunedlogfreqspec \
+                -d vamp:matthiasm:nnls_chroma:tuning \
+                -w csv \
+                --csv-basedir "$songdir/" \
+                "$wavfilename"
+        matlab_infile=`echo "$wavfilename" | sed "s/'/''/g"`
+        matlab_chromafile=`echo "$songdir/$songbasename" | sed "s/'/''/g"`_vamp_matthiasm_nnls_chroma_bothchroma.csv
+        matlab_outbase=`echo "$songdir/$songbasename" | sed "s/'/''/g"`
+        matlab_segout="$matlab_outbase".seg
+        matlab_chordout="$matlab_outbase".chord
+        # matlab_keyout="$matlab_outbase".key # is still done in matlab
+        echo oooooooooooooooooooooooooooooooooooooooooooooooo
+        echo segmentation
+        echo oooooooooooooooooooooooooooooooooooooooooooooooo
+        echo "run_segmentation('$matlab_infile','$matlab_segout','$matlab_chromafile')" | matlab -nodisplay -nojvm 2>&1 >/dev/null | tee "$matlogfile"
+	if grep -qi "error" "$matlogfile" ; then
+	    report_failure "$wavfilename"
+	    exit
+	else
+	    rm "$matlogfile"
+	fi
+        echo oooooooooooooooooooooooooooooooooooooooooooooooo
+        echo DBN chord estimation
+        echo oooooooooooooooooooooooooooooooooooooooooooooooo
+        echo "run_chordandkey('$matlab_infile','$matlab_chordout','$matlab_chromafile')" | matlab -nodisplay -nojvm 2>&1 >/dev/null | tee "$matlogfile" 
+	cat "$matlogfile"
+	if grep -qi "error" "$matlogfile" ; then
+	    report_failure "$wavfilename"
+	    exit
+	else
+	    rm "$matlogfile"
+	fi
+	report_success "$wavfilename"
+
+	)200>"$songdir/.lock"
+    done
+
+done > "$logfile" 2>&1
+
+
diff -r 000000000000 -r 4182672fd6f8 mygenpath.m
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/mygenpath.m	Tue Apr 24 11:52:05 2012 +0100
@@ -0,0 +1,61 @@
+function p = mygenpath(d,varargin)
+%GENPATH Generate recursive toolbox path.
+%   P = GENPATH returns a new path string by adding
+%   all the subdirectories of MATLABROOT/toolbox, including empty
+%   subdirectories. 
+%
+%   P = GENPATH(D) returns a path string starting in D, plus, recursively, all
+%   the subdirectories of D, including empty subdirectories.
+%   
+%   NOTE: GENPATH will not exactly recreate the original MATLAB path.
+%
+%   See also PATH, ADDPATH, RMPATH, SAVEPATH.
+
+%   Copyright 1984-2006 The MathWorks, Inc.
+%   $Revision: 1.13.4.4 $ $Date: 2006/10/14 12:24:02 $
+%------------------------------------------------------------------------------
+
+if nargin==0,
+  p = genpath(fullfile(matlabroot,'toolbox'));
+  if length(p) > 1, p(end) = []; end % Remove trailing pathsep
+  return
+end
+if nargin==1
+  pat = 'imporobablepatternthisis';
+else
+  pat = varargin{1};
+end
+% initialise variables
+methodsep = '@';  % qualifier for overloaded method directories
+p = '';           % path to be returned
+
+% Generate path based on given root directory
+files = dir(d);
+if isempty(files)
+  return
+end
+
+% Add d to the path even if it is empty.
+p = [p d pathsep];
+
+% set logical vector for subdirectory entries in d
+isdir = logical(cat(1,files.isdir));
+%
+% Recursively descend through directories which are neither
+% private nor "class" directories.
+%
+dirs = files(isdir); % select only directory entries from the current listing
+
+for i=1:length(dirs)
+   dirname = dirs(i).name;
+   if    ~strcmp( dirname,'.')          && ...
+         ~strcmp( dirname,'..')         && ...
+         ~strncmp( dirname,methodsep,1) && ...
+         ~strcmp( dirname,'private')    && ...
+         isempty(regexp(dirname,'svn','ONCE')) && ...
+         isempty(regexp(dirname, pat,'ONCE'))
+      p = [p genpath(fullfile(d,dirname))]; % recursive calling of this function.
+   end
+end
+
+%------------------------------------------------------------------------------
diff -r 000000000000 -r 4182672fd6f8 process-all.sh
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/process-all.sh	Tue Apr 24 11:52:05 2012 +0100
@@ -0,0 +1,41 @@
+#!/bin/bash
+
+base=/import/c4dm-music-a/C4DM\ Music\ Collection
+
+echo "base: $base"
+
+find "$base" -type d | while read source; do
+
+    ls "$source" | fgrep -q .wav || continue
+
+    echo "source: $source"
+    dirname=${source#$base}
+    dirname=${dirname#/}
+    echo "dirname: $dirname"
+    [ -n "$dirname" ] || continue
+
+    for type in ChordID ChordID-simple Segmentation; do
+	
+	target="output/$dirname/$type"
+	mkdir -p "$target"
+
+	(
+	    flock -en 200 || exit
+
+	    echo "Have lock on $target"
+	
+	    for f in "$source"/*.wav ; do 
+		[ -f "$f" ] || continue
+		filebase=`basename "$f"`
+		if [ ! -s "$target/$filebase.txt" ]; then
+		    echo "$f" 
+		fi
+	    done > "$target/source.txt"
+
+	    bash ./do$type.sh "$target/source.txt" "$target"
+
+	)200>"$target/.lock"
+
+    done
+
+done
diff -r 000000000000 -r 4182672fd6f8 run_chordandkey.m
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/run_chordandkey.m	Tue Apr 24 11:52:05 2012 +0100
@@ -0,0 +1,44 @@
+function run_chordandkey(filename,outfilename,chromafilename)
+%%
+warning off
+path(path,genpath('.'));
+warning on
+
+fprintf(2,'[MATLAB] initialising parameters...');
+param = param_mirex(chromafilename);
+song = song_skeleton(filename);
+fprintf(2,'done.\n');
+
+fprintf(2,'[MATLAB] building DBN...');
+bnet = dbn_ISMIR2010(param);
+fprintf(2,'done.\n');
+
+fprintf(2,'[MATLAB] reading chroma...');
+song = song_chroma(song, param);
+fprintf(2,'done.\n');
+
+fprintf(2,'[MATLAB] beat tracking (M Davies)...');
+song = song_beat(song, param);
+fprintf(2,'done.\n');
+
+fprintf(2,'[MATLAB] beat-synchronising chroma...');
+song = song_syncchroma(song,param);
+fprintf(2,'done.\n');
+
+fprintf(2,'[MATLAB] segmentation...');
+song = song_segment(song, param);
+song = song_segchroma(song,param);
+fprintf(2,'.\n');
+
+fprintf(2,'[MATLAB] DBN inference...');
+song = inference(song, bnet, param);
+fprintf(2,'.\n');
+%%
+fprintf(2,'[MATLAB] writing output files...');
+% fprintf(1,'writing to %s\n', outfilename)
+write_song(song, bnet, param, outfilename, 'chordlab', 1);
+write_song(song, bnet, param, [outfilename(1:end-5) 'key'], 'keylab', 1);
+% parts2csv(song, [outfilename(1:end-3) 'csv']);
+% parts2csv(song, [outfilename(1:end-3) 'intcsv'],'integrated');
+fprintf(2,'done.\n');
+exit
\ No newline at end of file
diff -r 000000000000 -r 4182672fd6f8 run_mirex.p
Binary file run_mirex.p has changed
diff -r 000000000000 -r 4182672fd6f8 run_segmentation.p
Binary file run_segmentation.p has changed
diff -r 000000000000 -r 4182672fd6f8 segmentation.sh
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/segmentation.sh	Tue Apr 24 11:52:05 2012 +0100
@@ -0,0 +1,19 @@
+#!/bin/bash
+infile="$1"
+outfile="$2"
+before="$(date +%s)"
+
+chromafile=tempchroma.csv
+
+mkdir -p "`dirname "$outfile"`"
+
+echo "[sonic annotator] ..."
+VAMP_PATH=. ./sonic-annotator-unix -d vamp:matthiasm:nnls_chroma:bothchroma -w csv --csv-stdout "$infile" 2> /dev/null | cut -d ',' -f 2-  > "$chromafile" 
+infile="`echo "$infile" | sed "s/'/''/g"`"
+outfile="`echo "$outfile" | sed "s/'/''/g"`"
+chromafile="`echo "$chromafile" | sed "s/'/''/g"`"		
+matlab -nodisplay -nojvm -r run_segmentation\(\'"$infile"\',\'"$outfile"\'\,\'"$chromafile"\'\) > /dev/null
+after="$(date +%s)"
+elapsed_seconds="$(expr $after - $before)"
+echo "  -->" time elapsed: $elapsed_seconds seconds
+echo " "