Chris@0: #!/bin/bash
Chris@0: 
matthiasm@6: listfile="$1"
matthiasm@6: if [ $# -gt 2 ]; then
matthiasm@6: 	outputdir="$3"
matthiasm@6: else
matthiasm@6: 	outputdir="$2"
Chris@0: fi
Chris@0: 
Chris@0: while read infile; do
Chris@0: 	if [ "$infile" -a -f "$infile" ]; then
Chris@0: 		before="$(date +%s)"
Chris@0: 		echo "_____________________________________________________"
Chris@0: 		echo " "
Chris@0: 		echo Processing file "$infile"
Chris@0: 		echo " "
matthiasm@6: 		outfile="$outputdir"/"`basename "$infile"`".txt
matthiasm@6: 		logfile=_logfiles/"`basename "$infile"`".log
matthiasm@6: 		chromafile=_chromadata/"`basename "$infile"`".csv
Chris@0: 		echo "[sonic annotator] ..."
Chris@0: 		VAMP_PATH=. ./sonic-annotator -d vamp:matthiasm:nnls_chroma:bothchroma -w csv --csv-stdout "$infile" 2> "$logfile" | cut -d ',' -f 2-  > "$chromafile" 
Chris@0: 		matlab -nodisplay -nojvm -r run_mirex\(\'"$infile"\',\'"$outfile"\'\,\'"$chromafile"\'\) >> $logfile
Chris@0: 		after="$(date +%s)"
Chris@0: 		elapsed_seconds="$(expr $after - $before)"
Chris@0: 		echo "  -->" time elapsed: $elapsed_seconds seconds
Chris@0: 		echo " "
Chris@0: 	else if [ ! "$infile" ]; then echo ...; fi
Chris@0: 	fi		
Chris@0: done < "$listfile"