annotate _FullBNT/KPMtools/computeROC.m @ 9:4ea6619cb3f5 tip

removed log files

function [FPrate, TPrate, AUC, thresholds] = computeROC(confidence, testClass)
% function [FPrate, TPrate, AUC, thresholds] = computeROC(confidence, testClass)
%
% computeROC computes the data for an ROC curve based on a classifier's confidence output.
% It returns the false positive rate and the true positive rate along with
% the area under the ROC curve, and the list of thresholds.
%
% Inputs: 
%           - confidence(i) is proportional to the probability that
%             testClass(i) is positive
%
% testClass = 0 => target absent
% testClass = 1 => target present
%
% Based on algorithms 2 and 4 from Tom Fawcett's paper "ROC Graphs: Notes and
% Practical Considerations for Data Mining Researchers" (2003)
% http://www.hpl.hp.com/techreports/2003/HPL-2003-4.pdf"
%
% Vlad Magdin, 21 Feb 2005

% break ties in scores
S = rand('state');
rand('state',0);
confidence = confidence + rand(size(confidence))*10^(-10);
rand('state',S)
[thresholds order] = sort(confidence, 'descend');
testClass = testClass(order);

%%% -- calculate TP/FP rates and totals -- %%%
AUC = 0;
faCnt = 0;
tpCnt = 0;
falseAlarms = zeros(1,size(thresholds,2));
detections = zeros(1,size(thresholds,2));
fPrev = -inf;
faPrev = 0;
tpPrev = 0;

P = max(size(find(testClass==1)));
N = max(size(find(testClass==0)));

for i=1:length(thresholds)
    if thresholds(i) ~= fPrev
        falseAlarms(i) = faCnt;
        detections(i) = tpCnt;

        AUC = AUC + polyarea([faPrev faPrev faCnt/N faCnt/N],[0 tpPrev tpCnt/P 0]);

        fPrev = thresholds(i);
        faPrev = faCnt/N;
        tpPrev = tpCnt/P;
    end
    
    if testClass(i) == 1
        tpCnt = tpCnt + 1;
    else
        faCnt = faCnt + 1;
    end
end

AUC = AUC + polyarea([faPrev faPrev 1 1],[0 tpPrev 1 0]);

FPrate = falseAlarms/N;
TPrate = detections/P;