diff userProgramsRM/test_MAP1_14Hopkins.m @ 38:c2204b18f4a2 tip

End nov big change

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/userProgramsRM/test_MAP1_14Hopkins.m	Mon Nov 28 13:34:28 2011 +0000
@@ -0,0 +1,194 @@
+function test_MAP1_14Hopkins
+% test_MAP1_14 is a general purpose test routine that can be adjusted to
+% test a number of different applications of MAP1_14
+%
+% A range of options are supplied in the early part of the program
+%
+% One use of the function is to create demonstrations; filenames <demoxx>
+%  to illustrate particular features
+%
+% #1
+% Identify the file (in 'MAPparamsName') containing the model parameters
+%
+% #2
+% Identify the kind of model required (in 'AN_spikesOrProbability').
+%  A full brainstem model (spikes) can be computed or a shorter model
+%  (probability) that computes only so far as the auditory nerve
+%
+% #3
+% Choose between a tone signal or file input (in 'signalType')
+%
+% #4
+% Set the signal rms level (in leveldBSPL)
+%
+% #5
+% Identify the channels in terms of their best frequencies in the vector
+%  BFlist.
+%
+% Last minute changes to the parameters fetched earlier can be made using
+%  the cell array of strings 'paramChanges'.
+%  Each string must have the same format as the corresponding line in the
+%  file identified in 'MAPparamsName'
+%
+% When the demonstration is satisfactory, freeze it by renaming it <demoxx>
+
+dbstop if error
+restorePath=path;
+addpath (['..' filesep 'MAP'],    ['..' filesep 'wavFileStore'], ...
+    ['..' filesep 'utilities'])
+
+%%  #1 parameter file name
+MAPparamsName='Normal';
+
+
+%% #2 probability (fast) or spikes (slow) representation
+AN_spikesOrProbability='spikes';
+%   or
+AN_spikesOrProbability='probability';
+
+
+%% #3 pure tone, harmonic sequence or speech file input
+signalType= 'tones';
+sampleRate= 50000;
+duration=0.100;                 % seconds
+rampDuration=.005;              % raised cosine ramp (seconds)
+beginSilence=0.050;               
+endSilence=0.050;                  
+toneFrequency= 1000;            % or a pure tone (Hz)
+
+%   or
+% harmonic sequence (Hz)
+F0=1000/11;
+toneFrequency= 10*F0:F0:12*F0;    
+
+%   or
+% signalType= 'file';
+% fileName='twister_44kHz';
+
+
+
+%% #4 rms level
+% signal details
+leveldBSPL= [44 50 44];                  % dB SPL (80 for Lieberman)
+leveldBSPL= [50 50 50];                  % dB SPL (80 for Lieberman)
+noiseLevel=-35;
+
+%% #5 number of channels in the model
+%   21-channel model (log spacing)
+numChannels=21;
+lowestBF=500; 	highestBF= 2000;
+BFlist=round(logspace(log10(lowestBF), log10(highestBF), numChannels));
+
+%   or specify your own channel BFs
+numChannels=1;
+BFlist=1000;
+
+
+%% #6 change model parameters
+
+paramChanges={};
+
+% Parameter changes can be used to change one or more model parameters
+%  *after* the MAPparams file has been read
+% This example declares only one fiber type with a calcium clearance time
+% constant of 80e-6 s (HSR fiber) when the probability option is selected.
+% paramChanges={'AN_IHCsynapseParams.ANspeedUpFactor=5;', ...
+%     'IHCpreSynapseParams.tauCa=86e-6; '};
+
+
+
+%% delare 'showMap' options to control graphical output
+showMapOptions.printModelParameters=1;   % prints all parameters
+showMapOptions.showModelOutput=1;       % plot of all stages
+showMapOptions.printFiringRates=1;      % prints stage activity levels
+showMapOptions.showACF=0;               % shows SACF (probability only)
+showMapOptions.showEfferent=0;          % tracks of AR and MOC
+showMapOptions.surfProbability=1;       % 2D plot of HSR response 
+showMapOptions.surfSpikes=0;            % 2D plot of spikes histogram
+showMapOptions.ICrates=0;               % IC rates by CNtauGk
+showMapOptions.PSTHbinwidth=0.001;
+showMapOptions.colorbar=0;
+showMapOptions.view=[0 90];
+
+% disable certain silly options
+if strcmp(AN_spikesOrProbability, 'spikes')
+    % avoid nonsensical options
+    showMapOptions.surfProbability=0;
+    showMapOptions.showACF=0;
+end
+
+if strcmp(signalType, 'file')
+    % needed for labeling plot
+    showMapOptions.fileName=fileName;
+else
+    showMapOptions.fileName=[];
+end
+
+%% Generate stimuli
+
+switch signalType
+    case 'tones'
+        % Create pure tone stimulus
+        dt=1/sampleRate; % seconds
+        time=dt: dt: duration;
+        amp=10.^(leveldBSPL/20)*28e-6;   % converts to Pascals (peak)
+        inputSignal=sin(2*pi*toneFrequency'*time);
+        amps=repmat(amp',1,length(time));
+        inputSignal=amps.*inputSignal;
+        inputSignal=sum(inputSignal, 1);
+        % apply ramps
+        % catch rampTime error
+        if rampDuration>0.5*duration, rampDuration=duration/2; end
+        rampTime=dt:dt:rampDuration;
+        ramp=[0.5*(1+cos(2*pi*rampTime/(2*rampDuration)+pi)) ...
+            ones(1,length(time)-length(rampTime))];
+        inputSignal=inputSignal.*ramp;
+        ramp=fliplr(ramp);
+        inputSignal=inputSignal.*ramp;
+        % add silence
+        intialSilence= zeros(1,round(beginSilence/dt));
+        finalSilence= zeros(1,round(endSilence/dt));
+        inputSignal= [intialSilence inputSignal finalSilence];
+
+        %% TEN noise input simple or mixed
+        [noise sampleRate]=wavread('TEN.wav');
+        dt=1/sampleRate;
+        noise=noise(:,1);
+        targetRMS=20e-6*10^(noiseLevel/20);
+        rms=(mean(noise.^2))^0.5;
+        amp=targetRMS/rms;
+        noise=noise*amp;
+        inputSignal=inputSignal+noise(1:length(inputSignal))';
+end
+
+
+%% run the model
+tic
+fprintf('\n')
+disp(['Signal duration= ' num2str(length(inputSignal)/sampleRate)])
+disp([num2str(numChannels) ' channel model: ' AN_spikesOrProbability])
+disp('Computing ...')
+
+MAP1_14(inputSignal, sampleRate, BFlist, ...
+    MAPparamsName, AN_spikesOrProbability, paramChanges);
+
+
+%% the model run is now complete. Now display the results
+UTIL_showMAP(showMapOptions, paramChanges)
+figure(97)
+title (['tones / noise levels: ' num2str([leveldBSPL noiseLevel])])
+if strcmp(signalType,'tones')
+    disp(['duration=' num2str(duration)])
+    disp(['level=' num2str(leveldBSPL)])
+    disp(['toneFrequency=' num2str(toneFrequency)])
+    global DRNLParams
+    disp(['attenuation factor =' ...
+        num2str(DRNLParams.rateToAttenuationFactor, '%5.3f') ])
+    disp(['attenuation factor (probability)=' ...
+        num2str(DRNLParams.rateToAttenuationFactorProb, '%5.3f') ])
+    disp(AN_spikesOrProbability)
+end
+disp(paramChanges)
+toc
+path(restorePath)
+