annotate utilities/UTIL_PSTHmakerb.m @ 22:45f28c49461e master

removing duplicate changes
author Ray Meddis <rmeddis@essex.ac.uk>
date Mon, 13 Jun 2011 18:21:05 +0100
parents c489ebada16e
children
rev   line source
rmeddis@21 1 function [PSTH ]=UTIL_PSTHmakerb(inputData, dt, PSTHbinWidth)
rmeddis@21 2 % UTIL_PSTHmakerb averages mean values into bins.
rmeddis@21 3 % No corrections are applied
rmeddis@21 4 % usage:
rmeddis@21 5 % PSTH=UTIL_PSTHmaker(inputData, method)
rmeddis@21 6 %
rmeddis@21 7 % arguments
rmeddis@21 8 % inputData is a channel x time matrix
rmeddis@21 9 % PSTH is the reduced matrix, the sum of all elements in the bin
rmeddis@21 10 %
rmeddis@21 11
rmeddis@21 12 [numChannels numDataPoints]= size(inputData);
rmeddis@21 13
rmeddis@21 14 % Multiple fibers is the same as repeat trials
rmeddis@21 15 % Consolidate data into a histogram
rmeddis@21 16 dataPointsPerBin=round(PSTHbinWidth/dt);
rmeddis@21 17 if dataPointsPerBin<=1;
rmeddis@21 18 % Too few data points
rmeddis@21 19 PSTH=inputData;
rmeddis@21 20 return
rmeddis@21 21 end
rmeddis@21 22
rmeddis@21 23 numBins=floor(numDataPoints/dataPointsPerBin);
rmeddis@21 24 PSTH=zeros(numChannels,numBins);
rmeddis@21 25
rmeddis@21 26 % take care that signal length is an integer multiple of bin size
rmeddis@21 27 % by dropping the last unuseable values
rmeddis@21 28 useableDataLength=numBins*dataPointsPerBin;
rmeddis@21 29 inputData=inputData(:,1:useableDataLength);
rmeddis@21 30
rmeddis@21 31 for ch=1:numChannels
rmeddis@21 32 % Convert each channel into a matrix where each column represents
rmeddis@21 33 % the content of a single PSTH bin
rmeddis@21 34 PSTH2D=reshape (inputData(ch,:), dataPointsPerBin, numBins );
rmeddis@21 35 % and sum within each bin (across the rows
rmeddis@21 36 PSTH(ch,:)=mean (PSTH2D,1);
rmeddis@21 37 end