Daniel@0: function sMap=sompak_train(sMap,ft,cout,ct,din,dt,rlen,alpha,radius)
Daniel@0: 
Daniel@0: %SOMPAK_TRAIN Call SOM_PAK training program from Matlab.
Daniel@0: %
Daniel@0: % sMap=sompak_train(sMap,ft,cout,ct,din,dt,rlen,alpha,radius)
Daniel@0: %
Daniel@0: % ARGUMENTS ([]'s are optional and can be given as empty: [] or '')
Daniel@0: %  sMap   (struct) map struct 
Daniel@0: %         (string) filename
Daniel@0: %  [ft]   (string) 'pak' or 'box'. Argument must be defined, if input file
Daniel@0: %                  is used.
Daniel@0: %  [cout] (string) filename for output SOM, if argument is not defined
Daniel@0: %                  (i.e. argument is '[]') temporary file '__abcdef' is
Daniel@0: %                  used in operations and *it_is_removed* after 
Daniel@0: %                  operations!!!
Daniel@0: %   [ct]  (string) 'pak' or 'box'. Argument must be defined, if output
Daniel@0: %                  file is used.
Daniel@0: %   din   (struct) data struct to be used in teaching
Daniel@0: %         (matrix) data matrix
Daniel@0: %         (string) filename
Daniel@0: %                  If argument is not a filename or file is .mat -file, 
Daniel@0: %                   temporary file '__din' is used in operations
Daniel@0: %                   and *it_is_removed* after operations!!!
Daniel@0: %  [dt]   (string) 'pak' or 'box'. Argument must be defined, if input file
Daniel@0: %                  is used.
Daniel@0: %  rlen   (scalar) running length of teaching
Daniel@0: %  alpha  (float)  initial alpha value
Daniel@0: %  radius (float)  initial radius of neighborhood
Daniel@0: % 
Daniel@0: % RETURNS
Daniel@0: %  sMap   (struct) map struct
Daniel@0: %
Daniel@0: % Calls SOM_PAK training program (vsom) from Matlab. Notice that to
Daniel@0: % use this function, the SOM_PAK programs must be in your search path,
Daniel@0: % or the variable 'SOM_PAKDIR' which is a string containing the
Daniel@0: % program path, must be defined in the workspace. SOM_PAK programs can
Daniel@0: % be found from: http://www.cis.hut.fi/research/som_lvq_pak.shtml
Daniel@0: %
Daniel@0: % See also SOMPAK_TRAIN, SOMPAK_SAMMON, SOMPAK_TRAIN_GUI,
Daniel@0: %          SOMPAK_GUI, SOM_SEQTRAIN.
Daniel@0: 
Daniel@0: % Contributed to SOM Toolbox vs2, February 2nd, 2000 by Juha Parhankangas
Daniel@0: % Copyright (c) by Juha Parhankangas
Daniel@0: % http://www.cis.hut.fi/projects/somtoolbox/
Daniel@0: 
Daniel@0: % Juha Parhankangas 050100
Daniel@0: 
Daniel@0: 
Daniel@0: nargchk(9,9,nargin);
Daniel@0: 
Daniel@0: NO_FILE=0;
Daniel@0: DIN_FILE = 0;
Daniel@0: 
Daniel@0: if ~isstruct(sMap) & ~isstr(sMap)
Daniel@0:   error('Argument ''sMap'' must be a struct or string.');
Daniel@0: end
Daniel@0: 
Daniel@0: if isstr(sMap)
Daniel@0:   if isempty(ft)
Daniel@0:     error('Argument ''ft'' must be defined.');
Daniel@0:   end
Daniel@0:   if strcmp(ft,'pak')
Daniel@0:     sMap=som_read_cod(sMap);
Daniel@0:   elseif strcmp(ft,'box')
Daniel@0:     new_var=diff_varname;
Daniel@0:     varnames=evalin('base','who');
Daniel@0:     loadname=eval(cat(2,'who(''-file'',''',sMap,''')'));
Daniel@0:     if any(strcmp(loadname{1},evalin('base','who')))
Daniel@0:       assignin('base',new_var,evalin('base',loadname{1}));
Daniel@0:       evalin('base',cat(2,'load(''',sMap,''');'));
Daniel@0:       new_var2=diff_varname;
Daniel@0: 
Daniel@0:       assignin('base',new_var2,evalin('base',loadname{1}));
Daniel@0:       assignin('base',loadname{1},evalin('base',new_var));
Daniel@0:       evalin('base',cat(2,'clear ',new_var));
Daniel@0:       sMap=evalin('base',new_var2);
Daniel@0:       evalin('base',cat(2,'clear ',new_var2));
Daniel@0:     else
Daniel@0:       evalin('base',cat(2,'load(''',sMap,''');'));
Daniel@0:       sMap=evalin('base',loadname{1});
Daniel@0:       evalin('base',cat(2,'clear ',loadname{1}));
Daniel@0:     end
Daniel@0: 
Daniel@0:   end
Daniel@0: end
Daniel@0: if ~isstr(cout) & isempty(cout)
Daniel@0:   cout = '__abcdef';
Daniel@0:   NO_FILE = 1;
Daniel@0: elseif ~isstr(cout) | (isstr(cout) & isempty(cout))
Daniel@0:   error('Argument ''cout'' must be a string or ''[]''.');
Daniel@0: end
Daniel@0: 
Daniel@0: if ~NO_FILE & (isempty(ct) | ~(~isempty(ct) & ...
Daniel@0:    (strcmp(ct,'pak') | strcmp(ct,'box'))))
Daniel@0:   error('Argument ''ct'' must be string ''pak'' or ''box''.');
Daniel@0: end
Daniel@0: 
Daniel@0: map_name=sMap.name;
Daniel@0: som_write_cod(sMap,cout);
Daniel@0: 
Daniel@0: if ~isempty(din)
Daniel@0:   som_write_data(din, '__din');
Daniel@0:   DIN_FILE = 1;
Daniel@0:   din = '__din';
Daniel@0: else
Daniel@0:   DIN_FILE=0;
Daniel@0: end
Daniel@0: 
Daniel@0: if ~DIN_FILE
Daniel@0:   if isempty(dt) | ~isstr(dt) | ~(strcmp(dt,'box') | strcmp(dt,'pak'))
Daniel@0:     error('Argument ''dt'' must be string ''pak'' or ''box''.');
Daniel@0:   end
Daniel@0:   if strcmp(dt,'box');
Daniel@0:     DIN_FILE = 1;
Daniel@0:     din_var=diff_varname;
Daniel@0:     varnames=evalin('base','who');
Daniel@0:     loadname=eval(cat(2,'who(''-file'',''',din,''')'));
Daniel@0:     if any(strcmp(loadname{1},evalin('base','who')))
Daniel@0:       assignin('base',din_var,evalin('base',loadname{1}));
Daniel@0:       evalin('base',cat(2,'load(''',din,''');'));
Daniel@0:       din_var2=diff_varname;
Daniel@0: 
Daniel@0:       assignin('base',new_var2,evalin('base',loadname{1}));
Daniel@0:       assignin('base',loadname{1},evalin('base',din_var));
Daniel@0:       evalin('base',cat(2,'clear ',din_var));
Daniel@0:       din=evalin('base',din_var2);
Daniel@0:     else
Daniel@0:       evalin('base',cat(2,'load(''',din,''')'));
Daniel@0:       din=evalin('base',loadname{1});
Daniel@0:       evalin('base',cat(2,'clear ',loadname{1}));
Daniel@0:     end
Daniel@0:     som_write_data(din,'__din');
Daniel@0:     din = '__din';
Daniel@0:   end
Daniel@0: end
Daniel@0: if ~is_positive_integer(rlen)
Daniel@0:   error('Argument ''rlen'' must be positive integer.');
Daniel@0: end
Daniel@0: 
Daniel@0: if ~(isreal(alpha) & all(size(alpha)==1))
Daniel@0:   error('Argument ''alpha'' must be a floating point number.');
Daniel@0: end
Daniel@0: 
Daniel@0: if ~(isreal(radius) & all(size(radius)==1) & radius > 0)
Daniel@0:   error('Argument ''radius'' must be a positive floating point number.');
Daniel@0: end
Daniel@0: 
Daniel@0: if any(strcmp('SOM_PAKDIR',evalin('base','who')))
Daniel@0:   traincommand=cat(2,evalin('base','SOM_PAKDIR'),'vsom ');
Daniel@0: else
Daniel@0:   traincommand='vsom ';
Daniel@0: end
Daniel@0: 
Daniel@0: str=cat(2,traincommand,sprintf('-cin %s -din %s -cout %s ',cout,din,cout),...
Daniel@0:                   sprintf(' -rlen %d -alpha %f -radius %f',rlen,alpha,radius));
Daniel@0: if isunix
Daniel@0:   unix(str);
Daniel@0: else
Daniel@0:   dos(str);
Daniel@0: end
Daniel@0: 
Daniel@0: sMap=som_read_cod(cout);
Daniel@0: sMap.name=map_name;
Daniel@0: 
Daniel@0: if ~NO_FILE
Daniel@0:   if isunix
Daniel@0:     unix(cat(2,'/bin/rm ',cout));
Daniel@0:   else
Daniel@0:     dos(cat(2,'del ',cout));
Daniel@0:   end
Daniel@0:   if isempty(ct) | ~isstr(ct) | ~(strcmp(ct,'pak') | strcmp(ct,'box'))
Daniel@0:     error('Argument ''ct'' must be string ''pak'' or ''box''.');
Daniel@0:   elseif strcmp(ct,'box');
Daniel@0:     eval(cat(2,'save ',cout,' sMap'));
Daniel@0:     disp(cat(2,'Output written to the file ',sprintf('''%s.mat''.',cout)));
Daniel@0:   else
Daniel@0:     som_write_cod(sMap,cout);
Daniel@0:   end
Daniel@0: else
Daniel@0:   if isunix
Daniel@0:     unix('/bin/rm __abcdef');
Daniel@0:   else
Daniel@0:     dos('del __abcdef');
Daniel@0:   end
Daniel@0: end 
Daniel@0: 
Daniel@0: if DIN_FILE
Daniel@0:   if isunix
Daniel@0:     unix('/bin/rm __din');
Daniel@0:   else
Daniel@0:     dos('del __abcdef');
Daniel@0:   end
Daniel@0: end
Daniel@0: 
Daniel@0: 
Daniel@0: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
Daniel@0: 
Daniel@0: function bool = is_positive_integer(x)
Daniel@0: 
Daniel@0: bool = ~isempty(x) & isreal(x) & all(size(x) == 1) & x > 0;
Daniel@0: if ~isempty(bool)
Daniel@0:   if bool & x~=round(x)
Daniel@0:     bool = 0;
Daniel@0:   end
Daniel@0: else
Daniel@0:   bool = 0;
Daniel@0: end
Daniel@0: 
Daniel@0: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
Daniel@0: 
Daniel@0: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
Daniel@0: 
Daniel@0: function str = diff_varname();
Daniel@0: 
Daniel@0: array=evalin('base','who');
Daniel@0: 
Daniel@0: if isempty(array)
Daniel@0:   str='a';
Daniel@0:   return;
Daniel@0: end
Daniel@0: 
Daniel@0: for i=1:length(array)
Daniel@0:   lens(i)=length(array{i});
Daniel@0: end
Daniel@0: 
Daniel@0: 
Daniel@0: ind=max(lens);
Daniel@0: 
Daniel@0: str(1:ind+1)='a';
Daniel@0: 
Daniel@0: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
Daniel@0: 
Daniel@0: 
Daniel@0: 
Daniel@0: 
Daniel@0: 
Daniel@0: 
Daniel@0: 
Daniel@0: 
Daniel@0: 
Daniel@0: 
Daniel@0: 
Daniel@0: