Daniel@0: function [DAT,H1]=openbdf(FILENAME)
Daniel@0: % EDF=openedf(FILENAME)
Daniel@0: % Opens an EDF File (European Data Format for Biosignals) in MATLAB (R)
Daniel@0: % <A HREF="http://www.medfac.leidenuniv.nl/neurology/knf/kemp/edf.htm">About EDF</A> 
Daniel@0: 
Daniel@0: %	Copyright (C) 1997-1998 by Alois Schloegl
Daniel@0: %	a.schloegl@ieee.org
Daniel@0: %	Ver 2.20 	18.Aug.1998
Daniel@0: %	Ver 2.21 	10.Oct.1998
Daniel@0: %	Ver 2.30 	 5.Nov.1998
Daniel@0: %
Daniel@0: %	For use under Octave define the following function
Daniel@0: % function s=upper(s); s=toupper(s); end;
Daniel@0: 
Daniel@0: % V2.12    Warning for missing Header information  
Daniel@0: % V2.20    EDF.AS.* changed
Daniel@0: % V2.30    EDF.T0 made Y2K compatible until Year 2090
Daniel@0: 
Daniel@0: % This program is free software; you can redistribute it and/or
Daniel@0: % modify it under the terms of the GNU General Public License
Daniel@0: % as published by the Free Software Foundation; either version 2
Daniel@0: % of the  License, or (at your option) any later version.
Daniel@0: % 
Daniel@0: % This program is distributed in the hope that it will be useful,
Daniel@0: % but WITHOUT ANY WARRANTY; without even the implied warranty of
Daniel@0: % MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
Daniel@0: % GNU General Public License for more details.
Daniel@0: % 
Daniel@0: % You should have received a copy of the GNU General Public License
Daniel@0: % along with this program; if not, write to the Free Software
Daniel@0: % Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.
Daniel@0: % Name changed Sept 6,2002  T.S. Lorig
Daniel@0: 
Daniel@0: SLASH='/';		% defines Seperator for Subdirectories
Daniel@0: BSLASH=setstr(92);
Daniel@0: 
Daniel@0: cname=computer;
Daniel@0: if cname(1:2)=='PC' SLASH=BSLASH; end;
Daniel@0: 
Daniel@0: fid=fopen(FILENAME,'r','ieee-le');          
Daniel@0: if fid<0 
Daniel@0: 	% fprintf(2,['Error LOADEDF: File ' FILENAME ' not found\n']);  
Daniel@0:     % Warning desactivated in MIRtoolbox
Daniel@0: 	return;
Daniel@0: end;
Daniel@0: 
Daniel@0: EDF.FILE.FID=fid;
Daniel@0: EDF.FILE.OPEN = 1;
Daniel@0: EDF.FileName = FILENAME;
Daniel@0: 
Daniel@0: PPos=min([max(find(FILENAME=='.')) length(FILENAME)+1]);
Daniel@0: SPos=max([0 find((FILENAME=='/') | (FILENAME==BSLASH))]);
Daniel@0: EDF.FILE.Ext = FILENAME(PPos+1:length(FILENAME));
Daniel@0: EDF.FILE.Name = FILENAME(SPos+1:PPos-1);
Daniel@0: if SPos==0
Daniel@0: 	EDF.FILE.Path = pwd;
Daniel@0: else
Daniel@0: 	EDF.FILE.Path = FILENAME(1:SPos-1);
Daniel@0: end;
Daniel@0: EDF.FileName = [EDF.FILE.Path SLASH EDF.FILE.Name '.' EDF.FILE.Ext];
Daniel@0: 
Daniel@0: H1=setstr(fread(EDF.FILE.FID,256,'char')');     %
Daniel@0: EDF.VERSION=H1(1:8);                     % 8 Byte  Versionsnummer 
Daniel@0: %if 0 fprintf(2,'LOADEDF: WARNING  Version EDF Format %i',ver); end;
Daniel@0: EDF.PID = deblank(H1(9:88));                  % 80 Byte local patient identification
Daniel@0: EDF.RID = deblank(H1(89:168));                % 80 Byte local recording identification
Daniel@0: %EDF.H.StartDate = H1(169:176);         % 8 Byte		
Daniel@0: %EDF.H.StartTime = H1(177:184);         % 8 Byte		
Daniel@0: EDF.T0=[str2num(H1(168+[7 8])) str2num(H1(168+[4 5])) str2num(H1(168+[1 2])) str2num(H1(168+[9 10])) str2num(H1(168+[12 13])) str2num(H1(168+[15 16])) ];
Daniel@0: 
Daniel@0: % Y2K compatibility until year 2090
Daniel@0: if EDF.VERSION(1)=='0'
Daniel@0:         if EDF.T0(1) < 91
Daniel@0:                 EDF.T0(1)=2000+EDF.T0(1);
Daniel@0:         else
Daniel@0:                 EDF.T0(1)=1900+EDF.T0(1);
Daniel@0:         end;
Daniel@0: else ;
Daniel@0:         % in a future version, this is hopefully not needed   
Daniel@0: end;
Daniel@0: 
Daniel@0: EDF.HeadLen = str2num(H1(185:192));  % 8 Byte  Length of Header
Daniel@0: % reserved = H1(193:236);	         % 44 Byte		
Daniel@0: EDF.NRec = str2num(H1(237:244));     % 8 Byte  # of data records
Daniel@0: EDF.Dur = str2num(H1(245:252));      % 8 Byte  # duration of data record in sec
Daniel@0: EDF.NS = str2num(H1(253:256));       % 8 Byte  # of signals
Daniel@0: 
Daniel@0: EDF.Label = setstr(fread(EDF.FILE.FID,[16,EDF.NS],'char')');		
Daniel@0: EDF.Transducer = setstr(fread(EDF.FILE.FID,[80,EDF.NS],'char')');	
Daniel@0: EDF.PhysDim = setstr(fread(EDF.FILE.FID,[8,EDF.NS],'char')');	
Daniel@0: 
Daniel@0: EDF.PhysMin= str2num(setstr(fread(EDF.FILE.FID,[8,EDF.NS],'char')'));	
Daniel@0: EDF.PhysMax= str2num(setstr(fread(EDF.FILE.FID,[8,EDF.NS],'char')'));	
Daniel@0: EDF.DigMin = str2num(setstr(fread(EDF.FILE.FID,[8,EDF.NS],'char')'));	%	
Daniel@0: EDF.DigMax = str2num(setstr(fread(EDF.FILE.FID,[8,EDF.NS],'char')'));	%	
Daniel@0: 
Daniel@0: % check validity of DigMin and DigMax
Daniel@0: if (length(EDF.DigMin) ~= EDF.NS)
Daniel@0:         fprintf(2,'Warning OPENEDF: Failing Digital Minimum\n');
Daniel@0:         EDF.DigMin = -(2^15)*ones(EDF.NS,1);
Daniel@0: end
Daniel@0: if (length(EDF.DigMax) ~= EDF.NS)
Daniel@0:         fprintf(2,'Warning OPENEDF: Failing Digital Maximum\n');
Daniel@0:         EDF.DigMax = (2^15-1)*ones(EDF.NS,1);
Daniel@0: end
Daniel@0: if (any(EDF.DigMin >= EDF.DigMax))
Daniel@0:         fprintf(2,'Warning OPENEDF: Digital Minimum larger than Maximum\n');
Daniel@0: end  
Daniel@0: % check validity of PhysMin and PhysMax
Daniel@0: if (length(EDF.PhysMin) ~= EDF.NS)
Daniel@0:         fprintf(2,'Warning OPENEDF: Failing Physical Minimum\n');
Daniel@0:         EDF.PhysMin = EDF.DigMin;
Daniel@0: end
Daniel@0: if (length(EDF.PhysMax) ~= EDF.NS)
Daniel@0:         fprintf(2,'Warning OPENEDF: Failing Physical Maximum\n');
Daniel@0:         EDF.PhysMax = EDF.DigMax;
Daniel@0: end
Daniel@0: if (any(EDF.PhysMin >= EDF.PhysMax))
Daniel@0:         fprintf(2,'Warning OPENEDF: Physical Minimum larger than Maximum\n');
Daniel@0:         EDF.PhysMin = EDF.DigMin;
Daniel@0:         EDF.PhysMax = EDF.DigMax;
Daniel@0: end  
Daniel@0: EDF.PreFilt= setstr(fread(EDF.FILE.FID,[80,EDF.NS],'char')');	%	
Daniel@0: tmp = fread(EDF.FILE.FID,[8,EDF.NS],'char')';	%	samples per data record
Daniel@0: EDF.SPR = str2num(setstr(tmp));	%	samples per data record
Daniel@0: 
Daniel@0: fseek(EDF.FILE.FID,32*EDF.NS,0);
Daniel@0: 
Daniel@0: EDF.Cal = (EDF.PhysMax-EDF.PhysMin)./ ...
Daniel@0:     (EDF.DigMax-EDF.DigMin);
Daniel@0: EDF.Off = EDF.PhysMin - EDF.Cal .* EDF.DigMin;
Daniel@0: tmp = find(EDF.Cal < 0);
Daniel@0: EDF.Cal(tmp) = ones(size(tmp));
Daniel@0: EDF.Off(tmp) = zeros(size(tmp));
Daniel@0: 
Daniel@0: EDF.Calib=[EDF.Off';(diag(EDF.Cal))];
Daniel@0: %EDF.Calib=sparse(diag([1; EDF.Cal]));
Daniel@0: %EDF.Calib(1,2:EDF.NS+1)=EDF.Off';
Daniel@0: 
Daniel@0: EDF.SampleRate = EDF.SPR / EDF.Dur;
Daniel@0: 
Daniel@0: EDF.FILE.POS = ftell(EDF.FILE.FID);
Daniel@0: if EDF.NRec == -1   % unknown record size, determine correct NRec
Daniel@0:   fseek(EDF.FILE.FID, 0, 'eof');
Daniel@0:   endpos = ftell(EDF.FILE.FID);
Daniel@0:   EDF.NRec = floor((endpos - EDF.FILE.POS) / (sum(EDF.SPR) * 2));
Daniel@0:   fseek(EDF.FILE.FID, EDF.FILE.POS, 'bof');
Daniel@0:   H1(237:244)=sprintf('%-8i',EDF.NRec);      % write number of records
Daniel@0: end; 
Daniel@0: 
Daniel@0: EDF.Chan_Select=(EDF.SPR==max(EDF.SPR));
Daniel@0: for k=1:EDF.NS
Daniel@0: 	if EDF.Chan_Select(k)
Daniel@0: 	    EDF.ChanTyp(k)='N';
Daniel@0: 	else
Daniel@0: 	    EDF.ChanTyp(k)=' ';
Daniel@0: 	end;         
Daniel@0: 	if findstr(upper(EDF.Label(k,:)),'ECG')
Daniel@0: 	    EDF.ChanTyp(k)='C';
Daniel@0: 	elseif findstr(upper(EDF.Label(k,:)),'EKG')
Daniel@0: 	    EDF.ChanTyp(k)='C';
Daniel@0: 	elseif findstr(upper(EDF.Label(k,:)),'EEG')
Daniel@0: 	    EDF.ChanTyp(k)='E';
Daniel@0: 	elseif findstr(upper(EDF.Label(k,:)),'EOG')
Daniel@0: 	    EDF.ChanTyp(k)='O';
Daniel@0: 	elseif findstr(upper(EDF.Label(k,:)),'EMG')
Daniel@0: 	    EDF.ChanTyp(k)='M';
Daniel@0: 	end;
Daniel@0: end;
Daniel@0: 
Daniel@0: EDF.AS.spb = sum(EDF.SPR);	% Samples per Block
Daniel@0: bi=[0;cumsum(EDF.SPR)]; 
Daniel@0: 
Daniel@0: idx=[];idx2=[];
Daniel@0: for k=1:EDF.NS, 
Daniel@0: 	idx2=[idx2, (k-1)*max(EDF.SPR)+(1:EDF.SPR(k))];
Daniel@0: end;
Daniel@0: maxspr=max(EDF.SPR);
Daniel@0: idx3=zeros(EDF.NS*maxspr,1);
Daniel@0: for k=1:EDF.NS, idx3(maxspr*(k-1)+(1:maxspr))=bi(k)+ceil((1:maxspr)'/maxspr*EDF.SPR(k));end;
Daniel@0: 
Daniel@0: %EDF.AS.bi=bi;
Daniel@0: EDF.AS.IDX2=idx2;
Daniel@0: %EDF.AS.IDX3=idx3;
Daniel@0: 
Daniel@0: 
Daniel@0: DAT.Head=EDF;  
Daniel@0: DAT.MX.ReRef=1;
Daniel@0: 
Daniel@0: %DAT.MX=feval('loadxcm',EDF);
Daniel@0: 
Daniel@0: return;