Daniel@0: % If all is well, all of these scripts should run without errors.
Daniel@0: 
Daniel@0: 
Daniel@0: % bnets
Daniel@0: cg1
Daniel@0: cg2
Daniel@0: discrete1
Daniel@0: fa1
Daniel@0: gaussian1
Daniel@0: gaussian2
Daniel@0: if exist('@gibbs_sampling_inf_engine/private/compute_posterior','file')
Daniel@0:   % only exists if installC has been run
Daniel@0:   gibbs_test1
Daniel@0: end
Daniel@0: learn1
Daniel@0: lw1
Daniel@0: mfa1
Daniel@0: mixexp1
Daniel@0: mixexp2
Daniel@0: mixexp3
Daniel@0: mog1
Daniel@0: mpe1
Daniel@0: mpe2
Daniel@0: qmr1
Daniel@0: qmr2
Daniel@0: sample1
Daniel@0: softev1
Daniel@0: softmax1
Daniel@0: sprinkler1
Daniel@0: 
Daniel@0: 
Daniel@0: % belief propagation
Daniel@0: belprop_polytree_discrete
Daniel@0: belprop_polytree_gauss % alag
Daniel@0: belprop_polytree_cg
Daniel@0: belprop_loop1_discrete
Daniel@0: belprop_loop1_gauss
Daniel@0: belprop_loopy_discrete
Daniel@0: belprop_loopy_gauss
Daniel@0: belprop_loopy_cg % like cg1
Daniel@0: 
Daniel@0: 
Daniel@0: % factor graphs
Daniel@0: %fg1   failed since marginals were not exact
Daniel@0: 
Daniel@0: fg2
Daniel@0: fg3
Daniel@0: fg_mrf1
Daniel@0: fg_mrf2
Daniel@0: 
Daniel@0: 
Daniel@0: % Structure learning
Daniel@0: bic1
Daniel@0: cooper_yoo
Daniel@0: k2demo1
Daniel@0: mcmc1
Daniel@0: model_select1
Daniel@0: pc1
Daniel@0: %pc2   failed due to numerical problems in KPMstats/cond_indep_fisher_z
Daniel@0: 
Daniel@0: 
Daniel@0: 
Daniel@0: 
Daniel@0: % limids
Daniel@0: asia_dt1
Daniel@0: id1
Daniel@0: oil1
Daniel@0: pigs1
Daniel@0: 
Daniel@0: 
Daniel@0: % dbns
Daniel@0: arhmm1
Daniel@0: bat1
Daniel@0: bkff1
Daniel@0: chmm1
Daniel@0: dhmm1
Daniel@0: filter_test1
Daniel@0: ghmm1
Daniel@0: kalman1
Daniel@0: kjaerulff1
Daniel@0: loopy_dbn1
Daniel@0: mhmm1
Daniel@0: mildew1
Daniel@0: reveal1
Daniel@0: viterbi1
Daniel@0: water1
Daniel@0: 
Daniel@0: 
Daniel@0: % HHMMs
Daniel@0: abcd_hhmm
Daniel@0: sample_square_hhmm_discrete
Daniel@0: %learn_square_hhmm_cts
Daniel@0: sample_motif_hhmm
Daniel@0: 
Daniel@0: %sparse jtree engine & ndx 2TBN engine
Daniel@0: if exist('@jtree_sparse_inf_engine/init_pot','file')
Daniel@0:   % only exists if installC has been run
Daniel@0:   discrete2
Daniel@0:   discrete3 
Daniel@0:   filter_test1
Daniel@0:   water2
Daniel@0: end
Daniel@0: 
Daniel@0: %find . -path '*.m' -exec wc -l {} \; | ~/count.pl
Daniel@0: 
Daniel@0: % we cannot use tic;toc to time test_BNT, since functions within this script
Daniel@0: % reset the tic;toc timer. Hence we use the following:
Daniel@0: %clock0=clock; cpu0 = cputime; test_BNT; cpu=cputime-cpu0; elapsed=etime(clock, clock0)