Daniel@0: bnet = mk_mildew_dbn;
Daniel@0: 
Daniel@0: T = 4;
Daniel@0: engine = {};
Daniel@0: engine{end+1} = jtree_unrolled_dbn_inf_engine(bnet, T);
Daniel@0: engine{end+1} = jtree_dbn_inf_engine(bnet); 
Daniel@0: %engine{end+1} = hmm_inf_engine(bnet); % 8 is observed but has kids
Daniel@0: engine{end+1} = smoother_engine(jtree_2TBN_inf_engine(bnet));
Daniel@0: %engine{end+1} = smoother_engine(hmm_2TBN_inf_engine(bnet));
Daniel@0: 
Daniel@0: inf_time = cmp_inference_dbn(bnet, engine, T, 'check_ll', 0)
Daniel@0: %learning_time = cmp_learning_dbn(bnet, engine, T)
Daniel@0: 
Daniel@0: S = struct(engine{1});
Daniel@0: S1 = struct(S.unrolled_engine);
Daniel@0: G = S1.jtree;
Daniel@0: %graph_to_dot(G, 'directed', 0, 'leftright', 1, ...
Daniel@0: %	     'filename', '/home/eecs/murphyk/WP/Thesis/Figures/Inf/Mildew/jtree.dot')
Daniel@0: %!dot -Tps jtree.dot -o jtree.ps
Daniel@0: % The resulting ps file cannot be converted using ps2pdf.
Daniel@0: 
Daniel@0: N = length(G);
Daniel@0: for i=1:N
Daniel@0:   for j=1:N
Daniel@0:     if G(i,j)
Daniel@0:       G(j,i)=1;
Daniel@0:     end
Daniel@0:   end
Daniel@0: end
Daniel@0: draw_graph(G)