diff toolboxes/FullBNT-1.0.7/KPMstats/est_transmat.m @ 0:cc4b1211e677 tip

initial commit to HG from
Changeset:
646 (e263d8a21543) added further path and more save "camirversion.m"

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+++ b/toolboxes/FullBNT-1.0.7/KPMstats/est_transmat.m	Fri Aug 19 13:07:06 2016 +0200
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+function [A,C] = est_transmat(seq)
+% ESTIMATE_TRANSMAT Max likelihood of a Markov chain transition matrix
+% [A,C] = estimate_transmat(seq)
+%
+% seq is a vector of positive integers
+%
+% e.g., seq = [1 2 1 2 3], C(1,2)=2, C(2,1)=1, C(2,3)=1, so
+% A(1,:)=[0 1 0], A(2,:) = [0.5 0 0.5],
+% all other entries are 0
+
+% Use a trick with sparse matrices to count the number of each transition.
+% From http://www.mathworks.com/company/newsletter/may03/dna.shtml
+
+C = full(sparse(seq(1:end-1), seq(2:end),1));
+A = mk_stochastic(C);