wolffd@0: % If all is well, all of these scripts should run without errors.
wolffd@0: 
wolffd@0: 
wolffd@0: % bnets
wolffd@0: cg1
wolffd@0: cg2
wolffd@0: discrete1
wolffd@0: fa1
wolffd@0: gaussian1
wolffd@0: gaussian2
wolffd@0: if exist('@gibbs_sampling_inf_engine/private/compute_posterior','file')
wolffd@0:   % only exists if installC has been run
wolffd@0:   gibbs_test1
wolffd@0: end
wolffd@0: learn1
wolffd@0: lw1
wolffd@0: mfa1
wolffd@0: mixexp1
wolffd@0: mixexp2
wolffd@0: mixexp3
wolffd@0: mog1
wolffd@0: mpe1
wolffd@0: mpe2
wolffd@0: qmr1
wolffd@0: qmr2
wolffd@0: sample1
wolffd@0: softev1
wolffd@0: softmax1
wolffd@0: sprinkler1
wolffd@0: 
wolffd@0: 
wolffd@0: % belief propagation
wolffd@0: belprop_polytree_discrete
wolffd@0: belprop_polytree_gauss % alag
wolffd@0: belprop_polytree_cg
wolffd@0: belprop_loop1_discrete
wolffd@0: belprop_loop1_gauss
wolffd@0: belprop_loopy_discrete
wolffd@0: belprop_loopy_gauss
wolffd@0: belprop_loopy_cg % like cg1
wolffd@0: 
wolffd@0: 
wolffd@0: % factor graphs
wolffd@0: %fg1   failed since marginals were not exact
wolffd@0: 
wolffd@0: fg2
wolffd@0: fg3
wolffd@0: fg_mrf1
wolffd@0: fg_mrf2
wolffd@0: 
wolffd@0: 
wolffd@0: % Structure learning
wolffd@0: bic1
wolffd@0: cooper_yoo
wolffd@0: k2demo1
wolffd@0: mcmc1
wolffd@0: model_select1
wolffd@0: pc1
wolffd@0: %pc2   failed due to numerical problems in KPMstats/cond_indep_fisher_z
wolffd@0: 
wolffd@0: 
wolffd@0: 
wolffd@0: 
wolffd@0: % limids
wolffd@0: asia_dt1
wolffd@0: id1
wolffd@0: oil1
wolffd@0: pigs1
wolffd@0: 
wolffd@0: 
wolffd@0: % dbns
wolffd@0: arhmm1
wolffd@0: bat1
wolffd@0: bkff1
wolffd@0: chmm1
wolffd@0: dhmm1
wolffd@0: filter_test1
wolffd@0: ghmm1
wolffd@0: kalman1
wolffd@0: kjaerulff1
wolffd@0: loopy_dbn1
wolffd@0: mhmm1
wolffd@0: mildew1
wolffd@0: reveal1
wolffd@0: viterbi1
wolffd@0: water1
wolffd@0: 
wolffd@0: 
wolffd@0: % HHMMs
wolffd@0: abcd_hhmm
wolffd@0: sample_square_hhmm_discrete
wolffd@0: %learn_square_hhmm_cts
wolffd@0: sample_motif_hhmm
wolffd@0: 
wolffd@0: %sparse jtree engine & ndx 2TBN engine
wolffd@0: if exist('@jtree_sparse_inf_engine/init_pot','file')
wolffd@0:   % only exists if installC has been run
wolffd@0:   discrete2
wolffd@0:   discrete3 
wolffd@0:   filter_test1
wolffd@0:   water2
wolffd@0: end
wolffd@0: 
wolffd@0: %find . -path '*.m' -exec wc -l {} \; | ~/count.pl
wolffd@0: 
wolffd@0: % we cannot use tic;toc to time test_BNT, since functions within this script
wolffd@0: % reset the tic;toc timer. Hence we use the following:
wolffd@0: %clock0=clock; cpu0 = cputime; test_BNT; cpu=cputime-cpu0; elapsed=etime(clock, clock0)