wolffd@0: % Make the HHMM in Figure 1 of the NIPS'01 paper
wolffd@0: 
wolffd@0: Qsize = [2 3 2];
wolffd@0: Qnodes = 1:3;
wolffd@0: D = 3;
wolffd@0: transprob = cell(1,D);
wolffd@0: termprob = cell(1,D);
wolffd@0: startprob = cell(1,D);
wolffd@0: clear A;
wolffd@0: 
wolffd@0: % transprob{d}(i,k,j), transprob{1}(i,j)
wolffd@0: % termprob{d}(k,j), termprob{1}(1,j)
wolffd@0: % startprob{d}(k,j), startprob{1}(1,j)
wolffd@0: 
wolffd@0: 
wolffd@0: % LEVEL 1
wolffd@0: 
wolffd@0: %       1 2 e
wolffd@0: A{1} = [0 0 1;
wolffd@0: 	0 0 1];
wolffd@0: [transprob{1}, termprob{1}] = remove_hhmm_end_state(A{1});
wolffd@0: startprob{1} = [0.5 0.5];
wolffd@0: 
wolffd@0: % LEVEL 2
wolffd@0: A{2} = zeros(Qsize(2), Qsize(1), Qsize(2)+1);
wolffd@0: 
wolffd@0: %              1 2 3 e
wolffd@0: A{2}(:,1,:) = [0 1 0 0  % Q1=1 => model below state 0
wolffd@0: 	       0 0 1 0
wolffd@0: 	       0 0 0 1];
wolffd@0: 
wolffd@0: %              1 2 3 e
wolffd@0: A{2}(:,2,:) = [0 1 0 0 % Q1=2 => model below state 1
wolffd@0: 	       0 0 1 0
wolffd@0: 	       0 0 0 1];
wolffd@0: 
wolffd@0: [transprob{2}, termprob{2}] = remove_hhmm_end_state(A{2});	       
wolffd@0: 
wolffd@0: % always enter level 2 in state 1
wolffd@0: startprob{2} = [1 0 0
wolffd@0: 		1 0 0];
wolffd@0: 
wolffd@0: % LEVEL 3
wolffd@0: 
wolffd@0: A{3} = zeros([Qsize(3) Qsize(2) Qsize(3)+1]);
wolffd@0: endstate = Qsize(3)+1;
wolffd@0: %    Qt-1(3) Qt(2) Qt(3)
wolffd@0: %                        1   2   e
wolffd@0: A{3}(1,      1,    endstate) = 1.0; % Q2=1 => model below state 2/5
wolffd@0: A{3}(:,      2,    :) = [0.0 1.0 0.0 % Q2=2 => model below state 3/6
wolffd@0:             	         0.5 0.0 0.5]; 
wolffd@0: A{3}(1,      3,    endstate) = 1.0; % Q2=3 => model below state 4/7
wolffd@0: 
wolffd@0: [transprob{3}, termprob{3}] = remove_hhmm_end_state(A{3});	       
wolffd@0: 
wolffd@0: startprob{3} = 'leftstart';
wolffd@0: 
wolffd@0: 
wolffd@0: 
wolffd@0: % OBS LEVEl
wolffd@0: 
wolffd@0: chars = ['a', 'b', 'c', 'd', 'x', 'y'];
wolffd@0: Osize = length(chars);
wolffd@0: 
wolffd@0: obsprob = zeros([Qsize Osize]);
wolffd@0: %       1 2 3 O
wolffd@0: obsprob(1,1,1,find(chars == 'a')) =  1.0;
wolffd@0: 
wolffd@0: obsprob(1,2,1,find(chars == 'x')) =  1.0;
wolffd@0: obsprob(1,2,2,find(chars == 'y')) =  1.0;
wolffd@0: 
wolffd@0: obsprob(1,3,1,find(chars == 'b')) =  1.0;
wolffd@0: 
wolffd@0: obsprob(2,1,1,find(chars == 'c')) =  1.0;
wolffd@0: 
wolffd@0: obsprob(2,2,1,find(chars == 'x')) =  1.0;
wolffd@0: obsprob(2,2,2,find(chars == 'y')) =  1.0;
wolffd@0: 
wolffd@0: obsprob(2,3,1,find(chars == 'd')) =  1.0;
wolffd@0: 
wolffd@0: Oargs = {'CPT', obsprob};
wolffd@0: 
wolffd@0: bnet = mk_hhmm('Qsizes', Qsize, 'Osize', Osize, 'discrete_obs', 1, ...
wolffd@0: 	       'Oargs', Oargs, 'Ops', Qnodes(1:3), ...
wolffd@0: 	       'startprob', startprob, 'transprob', transprob, 'termprob', termprob);
wolffd@0: 
wolffd@0: 
wolffd@0: Q1 = 1; Q2 = 2; Q3 = 3; F3 = 4; F2 = 5; Onode = 6;
wolffd@0: Qnodes = [Q1 Q2 Q3]; Fnodes = [F2 F3];
wolffd@0: 
wolffd@0: for seqi=1:3
wolffd@0:   evidence = sample_dbn(bnet, 'stop_test', 'is_F2_true_D3');      
wolffd@0:   ev = cell2num(evidence);
wolffd@0:   chars(ev(end,:))
wolffd@0:   %T = size(evidence, 2)
wolffd@0:   %pretty_print_hhmm_parse(evidence, Qnodes, Fnodes, Onode, chars);
wolffd@0: end