diff toolboxes/MIRtoolbox1.3.2/somtoolbox/sompak_train.m @ 0:e9a9cd732c1e tip

first hg version after svn

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/toolboxes/MIRtoolbox1.3.2/somtoolbox/sompak_train.m	Tue Feb 10 15:05:51 2015 +0000
@@ -0,0 +1,243 @@
+function sMap=sompak_train(sMap,ft,cout,ct,din,dt,rlen,alpha,radius)
+
+%SOMPAK_TRAIN Call SOM_PAK training program from Matlab.
+%
+% sMap=sompak_train(sMap,ft,cout,ct,din,dt,rlen,alpha,radius)
+%
+% ARGUMENTS ([]'s are optional and can be given as empty: [] or '')
+%  sMap   (struct) map struct 
+%         (string) filename
+%  [ft]   (string) 'pak' or 'box'. Argument must be defined, if input file
+%                  is used.
+%  [cout] (string) filename for output SOM, if argument is not defined
+%                  (i.e. argument is '[]') temporary file '__abcdef' is
+%                  used in operations and *it_is_removed* after 
+%                  operations!!!
+%   [ct]  (string) 'pak' or 'box'. Argument must be defined, if output
+%                  file is used.
+%   din   (struct) data struct to be used in teaching
+%         (matrix) data matrix
+%         (string) filename
+%                  If argument is not a filename or file is .mat -file, 
+%                   temporary file '__din' is used in operations
+%                   and *it_is_removed* after operations!!!
+%  [dt]   (string) 'pak' or 'box'. Argument must be defined, if input file
+%                  is used.
+%  rlen   (scalar) running length of teaching
+%  alpha  (float)  initial alpha value
+%  radius (float)  initial radius of neighborhood
+% 
+% RETURNS
+%  sMap   (struct) map struct
+%
+% Calls SOM_PAK training program (vsom) from Matlab. Notice that to
+% use this function, the SOM_PAK programs must be in your search path,
+% or the variable 'SOM_PAKDIR' which is a string containing the
+% program path, must be defined in the workspace. SOM_PAK programs can
+% be found from: http://www.cis.hut.fi/research/som_lvq_pak.shtml
+%
+% See also SOMPAK_TRAIN, SOMPAK_SAMMON, SOMPAK_TRAIN_GUI,
+%          SOMPAK_GUI, SOM_SEQTRAIN.
+
+% Contributed to SOM Toolbox vs2, February 2nd, 2000 by Juha Parhankangas
+% Copyright (c) by Juha Parhankangas
+% http://www.cis.hut.fi/projects/somtoolbox/
+
+% Juha Parhankangas 050100
+
+
+nargchk(9,9,nargin);
+
+NO_FILE=0;
+DIN_FILE = 0;
+
+if ~isstruct(sMap) & ~isstr(sMap)
+  error('Argument ''sMap'' must be a struct or string.');
+end
+
+if isstr(sMap)
+  if isempty(ft)
+    error('Argument ''ft'' must be defined.');
+  end
+  if strcmp(ft,'pak')
+    sMap=som_read_cod(sMap);
+  elseif strcmp(ft,'box')
+    new_var=diff_varname;
+    varnames=evalin('base','who');
+    loadname=eval(cat(2,'who(''-file'',''',sMap,''')'));
+    if any(strcmp(loadname{1},evalin('base','who')))
+      assignin('base',new_var,evalin('base',loadname{1}));
+      evalin('base',cat(2,'load(''',sMap,''');'));
+      new_var2=diff_varname;
+
+      assignin('base',new_var2,evalin('base',loadname{1}));
+      assignin('base',loadname{1},evalin('base',new_var));
+      evalin('base',cat(2,'clear ',new_var));
+      sMap=evalin('base',new_var2);
+      evalin('base',cat(2,'clear ',new_var2));
+    else
+      evalin('base',cat(2,'load(''',sMap,''');'));
+      sMap=evalin('base',loadname{1});
+      evalin('base',cat(2,'clear ',loadname{1}));
+    end
+
+  end
+end
+if ~isstr(cout) & isempty(cout)
+  cout = '__abcdef';
+  NO_FILE = 1;
+elseif ~isstr(cout) | (isstr(cout) & isempty(cout))
+  error('Argument ''cout'' must be a string or ''[]''.');
+end
+
+if ~NO_FILE & (isempty(ct) | ~(~isempty(ct) & ...
+   (strcmp(ct,'pak') | strcmp(ct,'box'))))
+  error('Argument ''ct'' must be string ''pak'' or ''box''.');
+end
+
+map_name=sMap.name;
+som_write_cod(sMap,cout);
+
+if ~isempty(din)
+  som_write_data(din, '__din');
+  DIN_FILE = 1;
+  din = '__din';
+else
+  DIN_FILE=0;
+end
+
+if ~DIN_FILE
+  if isempty(dt) | ~isstr(dt) | ~(strcmp(dt,'box') | strcmp(dt,'pak'))
+    error('Argument ''dt'' must be string ''pak'' or ''box''.');
+  end
+  if strcmp(dt,'box');
+    DIN_FILE = 1;
+    din_var=diff_varname;
+    varnames=evalin('base','who');
+    loadname=eval(cat(2,'who(''-file'',''',din,''')'));
+    if any(strcmp(loadname{1},evalin('base','who')))
+      assignin('base',din_var,evalin('base',loadname{1}));
+      evalin('base',cat(2,'load(''',din,''');'));
+      din_var2=diff_varname;
+
+      assignin('base',new_var2,evalin('base',loadname{1}));
+      assignin('base',loadname{1},evalin('base',din_var));
+      evalin('base',cat(2,'clear ',din_var));
+      din=evalin('base',din_var2);
+    else
+      evalin('base',cat(2,'load(''',din,''')'));
+      din=evalin('base',loadname{1});
+      evalin('base',cat(2,'clear ',loadname{1}));
+    end
+    som_write_data(din,'__din');
+    din = '__din';
+  end
+end
+if ~is_positive_integer(rlen)
+  error('Argument ''rlen'' must be positive integer.');
+end
+
+if ~(isreal(alpha) & all(size(alpha)==1))
+  error('Argument ''alpha'' must be a floating point number.');
+end
+
+if ~(isreal(radius) & all(size(radius)==1) & radius > 0)
+  error('Argument ''radius'' must be a positive floating point number.');
+end
+
+if any(strcmp('SOM_PAKDIR',evalin('base','who')))
+  traincommand=cat(2,evalin('base','SOM_PAKDIR'),'vsom ');
+else
+  traincommand='vsom ';
+end
+
+str=cat(2,traincommand,sprintf('-cin %s -din %s -cout %s ',cout,din,cout),...
+                  sprintf(' -rlen %d -alpha %f -radius %f',rlen,alpha,radius));
+if isunix
+  unix(str);
+else
+  dos(str);
+end
+
+sMap=som_read_cod(cout);
+sMap.name=map_name;
+
+if ~NO_FILE
+  if isunix
+    unix(cat(2,'/bin/rm ',cout));
+  else
+    dos(cat(2,'del ',cout));
+  end
+  if isempty(ct) | ~isstr(ct) | ~(strcmp(ct,'pak') | strcmp(ct,'box'))
+    error('Argument ''ct'' must be string ''pak'' or ''box''.');
+  elseif strcmp(ct,'box');
+    eval(cat(2,'save ',cout,' sMap'));
+    disp(cat(2,'Output written to the file ',sprintf('''%s.mat''.',cout)));
+  else
+    som_write_cod(sMap,cout);
+  end
+else
+  if isunix
+    unix('/bin/rm __abcdef');
+  else
+    dos('del __abcdef');
+  end
+end 
+
+if DIN_FILE
+  if isunix
+    unix('/bin/rm __din');
+  else
+    dos('del __abcdef');
+  end
+end
+
+
+%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
+
+function bool = is_positive_integer(x)
+
+bool = ~isempty(x) & isreal(x) & all(size(x) == 1) & x > 0;
+if ~isempty(bool)
+  if bool & x~=round(x)
+    bool = 0;
+  end
+else
+  bool = 0;
+end
+
+%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
+
+%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
+
+function str = diff_varname();
+
+array=evalin('base','who');
+
+if isempty(array)
+  str='a';
+  return;
+end
+
+for i=1:length(array)
+  lens(i)=length(array{i});
+end
+
+
+ind=max(lens);
+
+str(1:ind+1)='a';
+
+%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
+
+
+
+
+
+
+
+
+
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+