diff toolboxes/MIRtoolbox1.3.2/somtoolbox/som_plotplane.m @ 0:e9a9cd732c1e tip

first hg version after svn

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/toolboxes/MIRtoolbox1.3.2/somtoolbox/som_plotplane.m	Tue Feb 10 15:05:51 2015 +0000
@@ -0,0 +1,285 @@
+function h=som_plotplane(varargin)
+
+%SOM_PLOTPLANE  Visualize the map prototype vectors as line graphs
+%
+% h=som_plotplane(lattice, msize, data, [color], [scaling], [pos])
+% h=som_plotplane(topol, data, [color], [scaling], [pos])
+%
+%  som_plotplane('hexa',[5 5], rand(25,4), jet(25)) 
+%  som_plotplane(sM, sM.codebook)
+%
+% Input and output arguments ([]'s are optional)
+%  lattice   (string) grid 'hexa' or 'rect'
+%  msize     (vector) size 1x2, defines the grid size 
+%            (matrix) size Mx2, defines explicit coordinates: in 
+%             this case the first argument does not matter 
+%  topol     (struct) map or topology struct
+%  data      (matrix) Mxd matrix, M=prod(msize) 
+%  [color]   (matrix) size Mx3, gives an individual color for each graph
+%            (string) ColorSpec gives the same color for each
+%             graph, default is 'k' (black)
+%  [scaling] (string) 'on' or 'off', default is 'on' 
+%  [pos]     (vector) 1x2 vector that determines translation. 
+%             Default is no translation.
+%
+%  h         (vector) the object handles for the LINE objects
+%
+%  If scaling is set on, the data will be linearly scaled in each
+%  unit so that min and max values span from lower to upper edge
+%  in each unit. If scaling is 'off', the proper scaling is left to 
+%  the user: values in range [-.5,.5] will be plotted within the limits of the 
+%  unit while values exceeding this range will be out of the unit. 
+%  Axis are set as in SOM_CPLANE.
+%
+% For more help, try 'type som_plotplane' or check out online documentation.
+% See also SOM_PLANE, SOM_PIEPLANE, SOM_BARPLANE
+
+%%%%%%%%%%%%% DETAILED DESCRIPTION %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
+%
+% som_plotplane
+%
+% PURPOSE
+% 
+% Visualizes the map prototype vectors as line graph
+%
+% SYNTAX
+%
+%  h = som_plotplane(topol, data)
+%  h = som_plotplane(lattice, msize, data)
+%  h = som_plotplane(..., color)
+%  h = som_plotplane(..., color, scaling)
+%  h = som_plotplane(..., color, scaling, pos)
+%
+% DESCRIPTION
+%
+%  Visualizes the map prototype vectors as line graph
+%
+% KNOWN BUGS
+%
+%  It is not possible to specify explicit coordinates for map
+%  consistig of just one unit as then the msize is interpreted as
+%  map size.
+%
+% FEATURES
+%
+%  - the colors are fixed: changing colormap in the figure (see
+%    COLORMAP) will not affect the coloring of the plots
+%
+% REQUIRED INPUT ARGUMENTS
+% 
+% lattice  The basic topology
+%
+%   (string) 'hexa' or 'rect' positions the plots according to hexagonal or 
+%            rectangular map lattice.
+%
+% msize    The size of the map grid     
+%         
+%   (vector) [n1 n2] vector defines the map size (height n1 units, width n2 
+%            units, total M=n1 x n2 units). The units will be placed to their 
+%            topological locations in order to form a uniform hexagonal or 
+%            rectangular grid.   
+%   (matrix) Mx2 matrix defines arbitary coordinates for the M units.
+%            In this case the argument 'lattice' has no effect.
+% 
+% topol    Topology of the map grid
+%
+%   (struct) map or topology struct from which the topology is taken
+% 
+% data     The data to be visualized
+%
+%   (matrix) Mxd matrix of data vectors. 
+% 
+% OPTIONAL INPUT ARGUMENTS
+%
+% If unspecified or given empty values ('' or []), default values
+% will be used for optional input arguments.
+% 
+% color    The color of the plots
+%
+%    (string) Matlab's ColorSpec (see help plot) string gives the same color 
+%             for each line.
+%
+%    (matrix) Mx3 matrix assigns an RGB color determined by the Nth row of
+%             the matrix to the Nth plot. 
+%
+%    (vector) 1x3 RGB vector gives the same color for each line.
+%
+% scaling  The data scaling mode
+%
+%    (string) 'on or 'off': if scaling is set on, the data will be
+%             linearly scaled in each unit so that min and max values span from 
+%             lower to upper edge in each unit. If scaling is 'off', the proper 
+%             scaling is left to the user: values in range [-.5,.5] will be plotted 
+%             within the limits of the unit while values exceeding this
+%             range will be out of the unit.
+%
+% pos      Position of the origin          
+%
+%    (vector) This is meant for drawing the plane in arbitary location in a 
+%             figure. Note the operation: if this argument is given, the
+%             axis limits setting part in the routine is skipped and the limits
+%             setting will be left to be done by MATLAB's
+%             defaults. By default no translation is done.
+%
+% OUTPUT ARGUMENTS
+%
+%  h (scalar)  Handle to the created patch object
+%
+% OBJECT TAG     
+%
+% Object property 'Tag' is set to 'planePlot'.       
+%
+% EXAMPLES
+%
+% %%% Create the data and make a map 
+%    
+% data=rand(1000,20); map=som_make(data);
+% 
+% %%% Create a 'gray' colormap that has 64 levels
+%    
+% color_map=gray(64);
+% 
+% %%% Draw plots using red color
+%    
+% som_plotplane(map, map.codebook,'r');
+%
+% %%% Calculate hits on the map and calculate colors so that
+%     black = min. number of hits and white = max. number of hits
+%
+% hit=som_hits(map,data); color=som_normcolor(hit(:),color_map);
+%
+% %%% Draw plots again. Now the gray level indicates the number of hits to 
+%     each node
+%
+% som_plotplane(map, map.codebook, color);
+%
+% SEE ALSO  
+%
+% som_cplane     Visualize a 2D component plane, u-matrix or color plane
+% som_barplane   Visualize the map prototype vectors as bar diagrams.
+% som_pieplane   Visualize the map prototype vectors as pie charts
+
+% Copyright (c) 1999-2000 by the SOM toolbox programming team.
+% http://www.cis.hut.fi/projects/somtoolbox/             
+
+% Version 2.0beta Johan 160799 juuso 151199 070600
+
+%%% Init & Check arguments %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
+
+[nargin, lattice, msize, data, color, scaling, pos] = vis_planeGetArgs(varargin{:});
+error(nargchk(3, 5, nargin));  % check no. of input args is correct
+
+s=0.8; % size of plot
+
+if nargin < 6 | isempty(pos)
+  pos=NaN; 
+end
+
+if nargin < 5 | isempty(scaling)
+  scaling='on'; 
+elseif ~vis_valuetype(scaling,{'string'}) | ...
+      ~any(strcmp(scaling,{'on','off'})),
+  error('Scaling should be string ''on'' or ''off''.');
+end
+
+l=size(data,2);
+
+if ~isnumeric(msize) | ndims(msize) ~= 2 | size(msize,2)~=2, 
+  error('msize has to be 1x2 grid size vector or a Nx2 coordinate matrix.');
+elseif size(msize,1) == 1,
+   xdim=msize(2);
+   ydim=msize(1);
+   N=xdim*ydim;
+   y=repmat(repmat([1:ydim]',xdim,1),1,l);
+   x=reshape(repmat([1:xdim],ydim*l,1),l,N)';
+else
+   x=repmat(msize(:,1),1,l);y=repmat(msize(:,2),1,l);
+   N=size(msize,1);
+   lattice='rect'; 
+   if isnan(pos),
+      pos=[0 0];
+   end
+end
+
+switch lattice
+case {'hexa', 'rect'}
+  ;
+otherwise
+  error(['Lattice' lattice ' not implemented!']);
+end  
+
+if ~isnumeric(data) | size(data,1) ~= N
+  error('Data matrix is invalid or has wrong size!');
+end
+
+if nargin < 4 | isempty(color),
+  color='k';
+elseif vis_valuetype(color, {'colorstyle',[N 3]}),
+  if ischar(color) & strcmp(color,'none'),
+    error('Colorstyle ''none'' not allowed in som_plotplane.');
+  end
+elseif vis_valuetype(color,{'1x3rgb'})
+  ;
+elseif ~vis_valuetype(color,{'nx3rgb',[N 3]},'all'), 
+  error('The color matrix has wrong size or contains invalid RGB values or colorstyle.');
+end
+
+[linesx, linesy]=vis_line(data,scaling);
+
+%%%% Action %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
+
+% Making the lattice.
+% Command view([0 90]) shows the map in 2D properly oriented
+
+switch lattice
+case 'hexa'
+  t=find(rem(y(:,1),2));                  % move even rows by .5
+  x(t,:)=x(t,:)-.5; 
+  x=(x./s+linesx).*s+.5; y=(y./s+linesy).*s;      % scale with s
+case 'rect' 
+  x=(x./s+linesx).*s; y=(y./s+linesy).*s;         % scale with s
+end
+
+%% Draw the map! ...
+
+h_=plot(x',y');
+
+if size(color,1) == 1
+  set(h_,'Color',color);
+else
+  for i=1:N,
+    set(h_(i,:),'Color',color(i,:));
+  end
+end
+
+if ~isnan(pos)
+  x=x+pos(1);y=y+pos(2);                    % move upper left corner 
+end                                         % to pos(1),pos(2)
+
+%% Set axes properties  
+
+ax=gca;           
+vis_PlaneAxisProperties(ax, lattice, msize, pos);
+
+%%% Build output %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
+
+set(h_,'Tag','planePlot');                % tag the lineobject 
+
+if nargout>0, h=h_; end                   % Set h only, 
+                                          % if there really is output
+                                          
+%% Subfuntion %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
+                                          
+function [x,y]=vis_line(data, scaling)
+
+s=size(data);
+% normalization between [0,1] if scaling is on
+if strcmp(scaling,'on')
+  mn=repmat(min(data,[],2),1,s(2));  
+  mx=repmat(max(data,[],2),1,s(2));
+  y=-((data-mn)./(mx-mn))+.5;        
+else                       % -sign is beacuse we do axis ij
+  y=-data;
+end
+
+x=repmat(linspace(-.5, .5, size(data,2)), size(data,1),1);