diff toolboxes/MIRtoolbox1.3.2/somtoolbox/som_normcolor.m @ 0:e9a9cd732c1e tip

first hg version after svn

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/toolboxes/MIRtoolbox1.3.2/somtoolbox/som_normcolor.m	Tue Feb 10 15:05:51 2015 +0000
@@ -0,0 +1,89 @@
+function color = som_normcolor(data, clrmap)
+
+%SOM_NORMCOLOR RGB values of indexed colors for a given dataset and colormap 
+%  
+% color = som_normcolor(data, [clrmap])
+%
+%  color = som_normcolor(data);
+%  color = som_normcolor(data,jet(64));
+%
+%  Input and output arguments ([]'s are optional):
+%   data     (struct) map or data struct
+%            (matrix) size N x dim
+%   [clrmap] (matrix) size N x 3, a valid colormap (an RGB value matrix)
+%                     Default is current colormap. See COLORMAP.
+%
+%   color    (matrix) size N x 3 x dim, RGB matrix 
+%
+% Purpose of this function is to calculate fixed RGB colors that are similar
+% to indexed colors with the specified colormap. This is because some
+% SOM Toolbox visualization functions (as SOM_GRID) do not use indexed colors 
+% if the underlying Matlab function (e.g. PLOT) do not use indexed colors
+%
+% EXAMPLE
+%
+% %%% Visualize three variables in a map using som_grid:
+% %%% Give coordinates for the markers according to variables 1 and 2, and 
+% %%% 'indexed colors' according to variable 3. 
+%
+% som_grid(map.topol.lattice,map.topol.msize,'Coord',map.codebook(:,1:2), ...
+%          'markercolor', som_normcolor(map.codebook(:,3)));
+
+% Contributed to SOM Toolbox 2.0, February 11th, 2000 by Johan Himberg
+% Copyright (c) by Johan Himberg
+% http://www.cis.hut.fi/projects/somtoolbox/
+
+% juha 150799 johan 010999
+
+%%%% check possible errors %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
+
+error(nargchk(1,2,nargin));
+
+if nargin < 2| isempty(clrmap),
+  clrmap=colormap;
+elseif ~vis_valuetype(clrmap,{'nx3rgb'}),
+  error('The specified colormap is invalid!');
+end
+
+d=size(clrmap,1);
+
+if isstruct(data),
+  m_names={'type';'codebook';'topol';'labels';'neigh';'mask';'trainhist';...
+           'name';'comp_names';'comp_norm'};
+  d_names=fieldnames(vis_struct);
+  if length(fieldnames(data)) ~= length(d_names)  % data is not som_data_struct
+    if length(fieldnames(data)) ~= length(m_names) % and not som_map_struct 
+      error('Input argument is not a ''som_vis'' or ''som_map'' struct.')
+    elseif ~all(strcmp(fieldnames(data),m_names))
+      error('Input argument is not a ''som_vis'' or ''som_map'' struct.')
+    else
+      data=data.codebook;
+    end
+  elseif ~all(strcmp(fieldnames(data),dnames))
+    error('Input argument is not a ''som_vis'' or ''som_map'' struct.')
+  else
+    data=data.data;
+  end
+end
+
+if ~isnumeric(data) | ndims(data) ~= 2
+  error('Data is not 2 dimensional numeric matrix.');
+end
+
+%%% action %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
+
+data=som_normalize(data,'range');
+
+for i=1:size(data,2),
+  inds=~isnan(data(:,i));
+  color(inds,:,i)=clrmap(round(data(inds,i)*(d-1))+1,:);
+  color(~inds,:,i)=NaN;
+end
+
+  
+
+
+
+
+
+