diff toolboxes/FullBNT-1.0.7/graph/Old/dag_to_jtree.m @ 0:e9a9cd732c1e tip

first hg version after svn

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/toolboxes/FullBNT-1.0.7/graph/Old/dag_to_jtree.m	Tue Feb 10 15:05:51 2015 +0000
@@ -0,0 +1,55 @@
+function [jtree, root, cliques, B, w, elim_order, moral_edges, fill_in_edges, strong] = ...
+    dag_to_jtree(dag, node_sizes, partial_order, stages, clusters)
+% DAG_TO_JTREE Moralize and triangulate a DAG, and make a junction tree from its cliques.
+% [jtree, root, cliques, B, w, elim_order, moral_edges, fill_in_edges, strong] = ...
+%    dag_to_jtree(dag, node_sizes, partial_order, stages, clusters)
+%
+% Input:
+% dag(i,j) 
+% jtree(i,j) = 1 iff there is an arc between clique i and clique j 
+% root = the root clique
+% cliques{i} = the nodes in clique i
+% B(i,j) = 1 iff node j occurs in clique i
+% w(i) = weight of clique i
+
+N = length(bnet.dag);
+if nargin < 2, obs_nodes = []; end
+if nargin < 3, stages = { 1:N }; end
+if nargin < 4, clusters = {}; end
+
+[MG, moral_edges]  = moralize(bnet.dag);
+
+% Add extra arcs between nodes in each cluster to ensure they occur in the same clique
+for i=1:length(clusters)
+  c = clusters{i};
+  MG(c,c) = 1;
+end
+MG = setdiag(MG, 0);
+
+% Find an optimal elimination ordering (NP-hard problem!)
+ns = bnet.node_sizes(:);
+ns(obs_nodes) = 1; % observed nodes have only 1 possible value
+partial_order = determine_elim_constraints(bnet, obs_nodes);
+
+if isempty(partial_order)
+  strong = 0;
+  elim_order = best_first_elim_order(MG, ns, stages);
+else
+  strong = 1;
+  elim_order = strong_elim_order(MG, ns, partial_order);
+end
+
+[MTG, cliques, fill_in_edges]  = triangulate(MG, elim_order);
+
+% Connect the cliques up into a jtree,
+[jtree, root, B, w] = cliques_to_jtree(cliques, ns);
+
+if 0
+  disp('testing dag to jtree');
+  % Find the cliques containing each node, and check they form a connected subtree
+  clqs_con_node = cell(1,N);
+  for i=1:N
+    clqs_con_node{i} = find(B(:,i))';
+  end
+  check_jtree_property(clqs_con_node, jtree);
+end