diff toolboxes/FullBNT-1.0.7/bnt/inference/dynamic/@pearl_dbn_inf_engine/Old/smooth_evidence.m @ 0:e9a9cd732c1e tip

first hg version after svn

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/toolboxes/FullBNT-1.0.7/bnt/inference/dynamic/@pearl_dbn_inf_engine/Old/smooth_evidence.m	Tue Feb 10 15:05:51 2015 +0000
@@ -0,0 +1,181 @@
+function [marginal, msg, loglik] = smooth_evidence(engine, evidence)
+
+[ss T] = size(evidence);
+bnet = bnet_from_engine(engine);
+onodes = engine.onodes;
+hnodes = mysetdiff(1:ss, onodes);
+hnodes = hnodes(:)';
+
+ns = bnet.node_sizes(:);
+onodes2 = [onodes(:); onodes(:)+ss];
+ns(onodes2) = 1;
+	   
+verbose = 0;
+pot_type = 'd';
+niter = engine.max_iter;
+
+if verbose, fprintf('new smooth\n'); end
+
+% msg(i1,t1,i2,j2) (i1,t1) -> (i2,t2)
+%lambda_msg = cell(ss,T,ss,T);
+%pi_msg = cell(ss,T,ss,T);
+
+% intra_lambda_msg(i,j,t) (i,t) -> (j,t), i is child
+% inter_lambda_msg(i,j,t) (i,t+1) -> (j,t), i is child
+% inter_pi_msg(i,j,t) (i,t-1) -> (j,t), i is parent
+intra_lambda_msg = cell(ss,ss,T);
+inter_lambda_msg = cell(ss,ss,T);
+inter_pi_msg = cell(ss,ss,T);
+
+lambda = cell(ss,T);
+pi = cell(ss,T);
+
+for t=1:T
+  for i=1:ss
+    lambda{i,t} = ones(ns(i), 1);
+    pi{i,t} = ones(ns(i), 1);
+    
+    cs = children(bnet.intra, i);
+    for c=cs(:)'
+      intra_lambda_msg{c,i,t} = ones(ns(i),1);
+    end
+    
+    cs = children(bnet.inter, i);
+    for c=cs(:)'
+      inter_lambda_msg{c,i,t} = ones(ns(i),1);
+    end
+    
+    ps = parents(bnet.inter, i);
+    for p=ps(:)'
+      inter_pi_msg{p,i,t} = ones(ns(i), 1); % not used for t==1
+    end
+  end
+end
+
+
+% each hidden node absorbs lambda from its observed child (if any)
+for t=1:T
+  for i=hnodes
+    c = engine.obschild(i);
+    if c > 0
+      if t==1
+	fam = family(bnet.dag, c);
+	e = bnet.equiv_class(c, 1);
+	CPDpot = CPD_to_pot(pot_type, bnet.CPD{e}, fam, bnet.node_sizes(:), bnet.cnodes(:), evidence(:,1));
+      else
+	fam = family(bnet.dag, c, 2); % within 2 slice network
+	e = bnet.equiv_class(c, 2);
+	CPDpot = CPD_to_pot(pot_type, bnet.CPD{e}, fam, bnet.node_sizes(:), bnet.cnodes(:), evidence(:,t-1:t));
+      end
+      temp = pot_to_marginal(CPDpot);
+      lam_msg = normalise(temp.T);
+      intra_lambda_msg{c,i,t} = lam_msg;
+    end
+  end
+end
+
+for iter=1:engine.max_iter
+  % FORWARD
+  for t=1:T
+    % update pi
+    for i=hnodes
+      if t==1
+	e = bnet.equiv_class(i,1);
+	CPD = struct(bnet.CPD{e});
+	pi{i,t} = CPD.CPT;
+      else
+	e = bnet.equiv_class(i,2);
+	CPD = struct(bnet.CPD{e});
+	ps = parents(bnet.inter, i);
+	dom = [ps i+ss];
+	pot = dpot(dom, ns(dom), CPD.CPT);
+	for p=ps(:)'
+	  temp = dpot(p, ns(p), inter_pi_msg{p,i,t});
+	  pot = multiply_by_pot(pot, temp);
+	end
+	pot = marginalize_pot(pot, i+ss);
+	temp = pot_to_marginal(pot);
+	pi{i,t} = temp.T;
+      end
+      if verbose, fprintf('%d updates pi\n', i+(t-1)*ss); disp(pi{i,t}); end
+    end
+    
+    % send pi msg to children 
+    for i=hnodes
+      cs = children(bnet.inter, i);
+      for c=cs(:)'
+	pot = pi{i,t};
+	for k=cs(:)'
+	  if k ~= c
+	    pot = pot .* inter_lambda_msg{k,i,t};
+	  end
+	end
+	cs2 = children(bnet.intra, i);
+	for k=cs2(:)'
+	  pot = pot .* intra_lambda_msg{k,i,t};
+	end
+	inter_pi_msg{i,c,t+1} = normalise(pot);
+	if verbose, fprintf('%d sends pi to %d\n', i+(t-1)*ss, c+t*ss); disp(inter_pi_msg{i,c,t+1}); end
+      end
+    end
+  end
+
+  if verbose, fprintf('backwards\n'); end
+  % BACKWARD
+  for t=T:-1:1
+    % update lambda
+    for i=hnodes
+      pot = ones(ns(i), 1);
+      cs = children(bnet.inter, i);
+      for c=cs(:)'
+	pot = pot .* inter_lambda_msg{c,i,t};
+      end
+      cs = children(bnet.intra, i);
+      for c=cs(:)'
+	pot = pot .* intra_lambda_msg{c,i,t};
+      end
+      lambda{i,t} = normalise(pot);
+      if verbose, fprintf('%d computes lambda\n', i+(t-1)*ss); disp(lambda{i,t}); end
+    end
+    
+    % send lambda msgs to hidden parents in prev slcie
+    for i=hnodes
+      ps = parents(bnet.inter, i);
+      if t > 1
+	e = bnet.equiv_class(i, 2);
+	CPD = struct(bnet.CPD{e});
+	fam = [ps i+ss];
+	for p=ps(:)'
+	  pot = dpot(fam, ns(fam), CPD.CPT);
+	  temp = dpot(i+ss, ns(i), lambda{i,t});
+	  pot = multiply_by_pot(pot, temp);
+	  for k=ps(:)'
+	    if k ~= p
+	      temp = dpot(k, ns(k), inter_pi_msg{k,i,t});
+	      pot = multiply_by_pot(pot, temp);
+	    end
+	  end
+	  pot = marginalize_pot(pot, p);
+	  temp = pot_to_marginal(pot);
+	  inter_lambda_msg{i,p,t-1} = normalise(temp.T);
+	  if verbose, fprintf('%d sends lambda to %d\n', i+(t-1)*ss, p+(t-2)*ss); disp(inter_lambda_msg{i,p,t-1}); end
+	end
+      end
+    end
+  end
+end
+
+
+
+marginal = cell(ss,T);
+for t=1:T
+  for i=hnodes
+    marginal{i,t} = normalise(pi{i,t} .* lambda{i,t});     
+  end
+end
+
+loglik = 0;
+
+msg.inter_pi_msg = inter_pi_msg;
+msg.inter_lambda_msg = inter_lambda_msg;
+msg.intra_lambda_msg = intra_lambda_msg;