diff toolboxes/FullBNT-1.0.7/KPMstats/parzenC.c @ 0:e9a9cd732c1e tip

first hg version after svn

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/toolboxes/FullBNT-1.0.7/KPMstats/parzenC.c	Tue Feb 10 15:05:51 2015 +0000
@@ -0,0 +1,116 @@
+/* C mex version of parzen.m
+[B,B2] = parzen(feat, mu,  Sigma, Nproto); 
+*/
+#include "mex.h"
+#include <stdio.h>
+#include <math.h>
+
+#define PI 3.141592654
+
+void mexFunction(int nlhs, mxArray *plhs[], int nrhs, const mxArray *prhs[]){
+  int    D, M, Q, T, d, m, q, t;
+  double *data, *mu, *SigmaPtr, *N, Sigma;
+  double *B, *dist, *B2, tmp;
+  const int* dim_mu;
+  double const1, const2, sum_m, sum_d, diff;
+  int Dt, DMq, Dm, MQt, Mq;
+  int dims_B2[3];
+
+  int ndim_mu, i, save_B2;
+  
+  data = mxGetPr(prhs[0]);
+  mu = mxGetPr(prhs[1]);
+  SigmaPtr = mxGetPr(prhs[2]);
+  Sigma = *SigmaPtr;
+  N = mxGetPr(prhs[3]);
+  
+  D = mxGetM(prhs[0]);
+  T = mxGetN(prhs[0]);
+
+  ndim_mu = mxGetNumberOfDimensions(prhs[1]);
+  dim_mu = mxGetDimensions(prhs[1]);
+  D = dim_mu[0];
+  M = dim_mu[1];
+  /* printf("parzenC: nlhs=%d, D=%d, M=%d, T=%d\n", nlhs, D, M, T);  */
+
+  /* If mu is mu(d,m,o,p), then [d M Q] = size(mu) in matlab sets Q=o*p,
+     i.e.. the size of all conditioning variabeles */
+  Q = 1;
+  for (i = 2; i < ndim_mu; i++) {
+    /* printf("dim_mu[%d]=%d\n", i, dim_mu[i]); */
+    Q = Q*dim_mu[i];
+  }
+
+  /* M = max(N) */
+  M = -1000000;
+  for (i=0; i < Q; i++) {
+    /* printf("N[%d]=%d\n", i, (int) N[i]); */
+    if (N[i] > M) {
+      M = (int) N[i];
+    }
+  }
+
+  /*  printf("parzenC: nlhs=%d, D=%d, Q=%d, M=%d, T=%d\n", nlhs, D, Q, M, T); */
+
+  plhs[0] = mxCreateDoubleMatrix(Q,T, mxREAL);
+  B = mxGetPr(plhs[0]);
+
+  if (nlhs >= 2)
+    save_B2 = 1;
+  else
+    save_B2 = 0;
+  
+  if (save_B2) {
+    /* printf("parzenC saving B2\n");  */
+    /*plhs[1] = mxCreateDoubleMatrix(M*Q*T,1, mxREAL);*/
+    dims_B2[0] = M;
+    dims_B2[1] = Q;
+    dims_B2[2] = T;
+    plhs[1] = mxCreateNumericArray(3, dims_B2, mxDOUBLE_CLASS, mxREAL);
+    B2 = mxGetPr(plhs[1]);
+  } else {
+    /* printf("parzenC not saving B2\n"); */
+  }
+  /*
+  plhs[2] = mxCreateDoubleMatrix(M*Q*T,1, mxREAL);
+  dist = mxGetPr(plhs[2]);
+  */
+  const1 = pow(2*PI*Sigma, -D/2.0);
+  const2 = -(1/(2*Sigma));
+ 
+  for (t=0; t < T; t++) {
+    /* printf("t=%d!\n",t); */
+    Dt  = D*t;
+    MQt = M*Q*t;
+    for (q=0; q < Q; q++) {
+      sum_m = 0;
+      DMq = D*M*q;
+      Mq = M*q;
+
+      for (m=0; m < (int)N[q]; m++) {
+	sum_d = 0;
+	Dm = D*m;
+	for (d=0; d < D; d++) {
+	  /* diff = data(d,t) - mu(d,m,q) */
+	  /*diff = data[d + D*t] - mu[d + D*m + D*M*q]; */
+	  diff = data[d + Dt] - mu[d + Dm + DMq];
+	  sum_d = sum_d + diff*diff;
+	}
+	/* dist[m,q,t] = dist[m + M*q + M*Q*t] = dist[m + Mq + MQt] = sum_d */
+	tmp = const1 * exp(const2*sum_d);
+	sum_m = sum_m + tmp;
+	if (save_B2)
+	  B2[m + Mq + MQt] = tmp;
+      }
+
+      if (N[q]>0) {
+	B[q + Q*t] = (1.0/N[q]) *  sum_m;
+      } else {
+	B[q + Q*t] = 0.0;
+      }
+    }
+  }
+}
+
+
+