diff toolboxes/FullBNT-1.0.7/KPMstats/mixgauss_em.m @ 0:e9a9cd732c1e tip

first hg version after svn

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/toolboxes/FullBNT-1.0.7/KPMstats/mixgauss_em.m	Tue Feb 10 15:05:51 2015 +0000
@@ -0,0 +1,74 @@
+function [mu, Sigma, prior] = mixgauss_em(Y, nc, varargin)
+% MIXGAUSS_EM Fit the parameters of a mixture of Gaussians using EM
+% function [mu, Sigma, prior] = mixgauss_em(data, nc, varargin)
+%
+% data(:, t) is the t'th data point
+% nc is the number of clusters
+
+% Kevin Murphy, 13 May 2003
+
+[max_iter, thresh, cov_type, mu, Sigma, method, ...
+ cov_prior, verbose, prune_thresh] = process_options(...
+    varargin, 'max_iter', 10, 'thresh', 1e-2, 'cov_type', 'full', ...
+    'mu', [], 'Sigma', [],  'method', 'kmeans', ...
+    'cov_prior', [], 'verbose', 0, 'prune_thresh', 0);
+
+[ny T] = size(Y);
+
+if nc==1
+  % No latent variable, so there is a closed-form solution
+  mu = mean(Y')';
+  Sigma = cov(Y');
+  if strcmp(cov_type, 'diag')
+    Sigma = diag(diag(Sigma));
+  end
+  prior = 1;
+  return;
+end
+
+if isempty(mu)
+  [mu, Sigma, prior] = mixgauss_init(nc, Y, cov_type, method);
+end
+
+previous_loglik = -inf;
+num_iter = 1;
+converged = 0;
+
+%if verbose, fprintf('starting em\n'); end
+
+while (num_iter <= max_iter) & ~converged
+  % E step
+  probY = mixgauss_prob(Y, mu, Sigma, prior); % probY(q,t)
+  [post, lik] = normalize(probY .* repmat(prior, 1, T), 1); % post(q,t)
+  loglik = log(sum(lik));
+ 
+  % extract expected sufficient statistics
+  w = sum(post,2);  % w(c) = sum_t post(c,t)
+  WYY = zeros(ny, ny, nc);  % WYY(:,:,c) = sum_t post(c,t) Y(:,t) Y(:,t)'
+  WY = zeros(ny, nc);  % WY(:,c) = sum_t post(c,t) Y(:,t)
+  WYTY = zeros(nc,1); % WYTY(c) = sum_t post(c,t) Y(:,t)' Y(:,t)
+  for c=1:nc
+    weights = repmat(post(c,:), ny, 1); % weights(:,t) = post(c,t)
+    WYbig = Y .* weights; % WYbig(:,t) = post(c,t) * Y(:,t)
+    WYY(:,:,c) = WYbig * Y';
+    WY(:,c) = sum(WYbig, 2); 
+    WYTY(c) = sum(diag(WYbig' * Y)); 
+  end
+  
+  % M step
+  prior = normalize(w);
+  [mu, Sigma] = mixgauss_Mstep(w, WY, WYY, WYTY, 'cov_type', cov_type, 'cov_prior', cov_prior);
+  
+  if verbose, fprintf(1, 'iteration %d, loglik = %f\n', num_iter, loglik); end
+  num_iter =  num_iter + 1;
+  converged = em_converged(loglik, previous_loglik, thresh);
+  previous_loglik = loglik;
+  
+end
+
+if prune_thresh > 0
+  ndx = find(prior < prune_thresh);
+  mu(:,ndx) = [];
+  Sigma(:,:,ndx) = [];
+  prior(ndx) = [];
+end