diff toolboxes/FullBNT-1.0.7/KPMstats/logist2.m @ 0:e9a9cd732c1e tip

first hg version after svn

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/toolboxes/FullBNT-1.0.7/KPMstats/logist2.m	Tue Feb 10 15:05:51 2015 +0000
@@ -0,0 +1,115 @@
+function [beta,p,lli] = logist2(y,x,w)
+% [beta,p,lli] = logist2(y,x) 
+%
+% 2-class logistic regression.  
+%
+% INPUT
+% 	y 	Nx1 colum vector of 0|1 class assignments
+% 	x 	NxK matrix of input vectors as rows
+% 	[w]	Nx1 vector of sample weights 
+%
+% OUTPUT
+% 	beta 	Kx1 column vector of model coefficients
+% 	p 	Nx1 column vector of fitted class 1 posteriors
+% 	lli 	log likelihood
+%
+% Class 1 posterior is 1 / (1 + exp(-x*beta))
+%
+% David Martin <[e-mail]> 
+% April 16, 2002
+
+% Copyright (C) 2002 David R. Martin <[e-mail]>
+%
+% This program is free software; you can redistribute it and/or
+% modify it under the terms of the GNU General Public License as
+% published by the Free Software Foundation; either version 2 of the
+% License, or (at your option) any later version.
+% 
+
+% This program is distributed in the hope that it will be useful, but
+% WITHOUT ANY WARRANTY; without even the implied warranty of
+% MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+% General Public License for more details.
+% 
+% You should have received a copy of the GNU General Public License
+% along with this program; if not, write to the Free Software
+% Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA
+% 02111-1307, USA, or see http://www.gnu.org/copyleft/gpl.html.
+
+error(nargchk(2,3,nargin));
+
+% check inputs
+if size(y,2) ~= 1,
+  error('Input y not a column vector.');
+end
+if size(y,1) ~= size(x,1), 
+  error('Input x,y sizes mismatched.'); 
+end
+
+% get sizes
+[N,k] = size(x);
+
+% if sample weights weren't specified, set them to 1
+if nargin < 3, 
+  w = 1;
+end
+
+% normalize sample weights so max is 1
+w = w / max(w);
+
+% initial guess for beta: all zeros
+beta = zeros(k,1);
+
+% Newton-Raphson via IRLS,
+% taken from Hastie/Tibshirani/Friedman Section 4.4.
+iter = 0;
+lli = 0;
+while 1==1,
+  iter = iter + 1;
+  
+  % fitted probabilities
+  p = 1 ./ (1 + exp(-x*beta));	
+  
+  % log likelihood
+  lli_prev = lli;
+  lli = sum( w .* (y.*log(p+eps) + (1-y).*log(1-p+eps)) );
+
+  % least-squares weights
+  wt = w .* p .* (1-p);		
+
+  % derivatives of likelihood w.r.t. beta
+  deriv = x'*(w.*(y-p));
+
+  % Hessian of likelihood w.r.t. beta
+  % hessian = x'Wx, where W=diag(w)
+  % Do it this way to be memory efficient and fast.
+  hess = zeros(k,k);
+  for i = 1:k,
+    wxi = wt .* x(:,i);
+    for j = i:k,
+      hij = wxi' * x(:,j);
+      hess(i,j) = -hij;
+      hess(j,i) = -hij;
+    end
+  end
+
+  % make sure Hessian is well conditioned
+  if (rcond(hess) < eps), 
+    error(['Stopped at iteration ' num2str(iter) ...
+           ' because Hessian is poorly conditioned.']);
+    break; 
+  end;
+
+  % Newton-Raphson update step
+  step = hess\deriv;
+  beta = beta - step;
+
+  % termination criterion based on derivatives
+  tol = 1e-6;
+  if abs(deriv'*step/k) < tol, break; end;
+
+  % termination criterion based on log likelihood
+%   tol = 1e-4;
+%   if abs((lli-lli_prev)/(lli+lli_prev)) < 0.5*tol, break; end;
+end;
+