diff toolboxes/graph_visualisation/graphViz4Matlab/util/processArgs.m @ 0:e9a9cd732c1e tip

first hg version after svn

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/toolboxes/graph_visualisation/graphViz4Matlab/util/processArgs.m	Tue Feb 10 15:05:51 2015 +0000
@@ -0,0 +1,346 @@
+function varargout = processArgs(userArgs, varargin)    
+% Process function arguments, allowing args to be passed by
+% the user either as name/value pairs, or positionally, or both. 
+%
+% This function also provides optional enforcement of required inputs, and 
+% optional type checking. Argument names must start with the '-'
+% character and not precede any positional arguments. 
+%
+% Matthew Dunham
+% University of British Columbia
+% Last updated January 14th, 2010
+%
+%% USAGE:
+%
+% [out1,out2,...,outN] = processArgs(userArgs ,...
+% '-name1' , default1                         ,...
+% '-name2' , default2                         ,...
+% '-nameN' , defaultN                         );
+% 
+% The 'userArgs' input is a cell array and in normal usage is simply the
+% varargin cell array from the calling function. It contains 0 to N values
+% or 0 to N name/value pairs. It may also contain a combination of
+% positional and named arguments as long as no named argument precedes a
+% positional one. 
+%
+% Note, this function is CASE INSENSITIVE. 
+%
+%% ENFORCING REQUIRED ARGUMENTS
+%
+% To ensure that certain arguments are passed in, (and error if not), add a
+% '*' character to the corresponding name as in
+%
+% [out1,...] = processArgs(userArgs,'*-name1',default1,...
+%
+%
+% Providing empty values, (e.g. {},[],'') for required arguments also
+% errors unless these were explicitly passed as named arguments. 
+%% TYPE CHECKING
+%
+% To enforce that the input type, (class) is the same type as the default
+% value, add a '+' character to the corresponding name as in
+%
+% [out1,...] = processArgs(userArgs,'+-name1',default1,...
+%
+% '+' and '*' can be combined as in
+%
+% [out1,...] = processArgs(userArgs,'*+-name1',default1,...
+%
+% or equivalently
+%
+% [out1,...] = processArgs(userArgs,'+*-name1',default1,...
+%% OTHER CONSIDERATIONS
+%
+% If the user passes in arguments in positional mode, and uses [], {}, or
+% '' as place holders, the default values are used in their place. When the
+% user passes in values via name/value pairs, this behavior does not
+% occur; the explicit value the user specified, (even if [], {}, '') is
+% always used. 
+%
+%% ADVANCED
+% The programmer must specify the same number of output arguments as
+% possible input arguments, OR exactly one output. If exactly one output
+% is used, the outputs are all bundled into a single cell array and
+% returned with each arg value preceded by its name. This can be useful for
+% relaying some or all of the arguments to subsequent functions as is done
+% with the extractArgs function.
+%
+%% DEPENDENCIES
+%
+% None
+%
+%% EXAMPLES
+% These are all valid usages. Note that here the first and second arguments
+% are required and the types of the second and fourth arguments are
+% checked. 
+%
+% outerFunction(obj,...
+%                 '-first'  , 1         ,...
+%                 '-second' , MvnDist() ,...
+%                 '-third'  , 22        ,...
+%                 '-fourth' , 10        ); 
+%
+% outerFunction(obj,'-fourth',3,'-second',MvnDist(),'-first',12);
+% outerFunction(obj,1,MvnDist(),3);
+% outerFunction(obj,1,MvnDist(),3,[]);                           
+% outerFunction(obj,'-first',1,'-second',DiscreteDist(),'-third',[]);
+% outerFunction(obj,1,MvnDist(),'-fourth',10);                           
+% 
+% 
+% function [a,b,c,d] = outerFunction(obj,varargin)
+%   [a,b,c,d] = processArgs(varargin ,...
+%   '*-first'       , []             ,...
+%   '*+-second'     , MvnDist()      ,...
+%   '-third'        , 18             ,...
+%   '+-fourth'      , 23             );
+% end 
+%%  CONSTANTS
+    PREFIX = '-';  % prefix that must precede the names of arguments. 
+    REQ    = '*';  % require the argument
+    TYPE   = '+';  % check the type of the arg against the default type
+    
+    % set to true for more exhaustive error checking or false for faster
+    % execution.
+    FULL_ERROR_CHECK = true; 
+
+%% PROCESS VARARGIN - PASSED BY PROGRAMMER
+    
+    %% Check Initial Inputs
+    if ~iscell(userArgs)                                                   ,throwAsCaller(MException('PROCESSARGS:noUserArgs','PROGRAMMER ERROR - you must pass in the user''s arguments in a cell array as in processArgs(varargin,''-name'',val,...)'));end
+    if isempty(varargin)                                                   ,throwAsCaller(MException('PROCESSARGS:emptyVarargin','PROGRAMMER ERROR - you have not passed in any name/default pairs to processArgs'));  end
+    %% Extract Programmer Argument Names and Markers
+    progArgNames  = varargin(1:2:end);
+    maxNargs  = numel(progArgNames);
+    required  = cellfun(@(c)any(REQ==c(1:min(3,end))),progArgNames);
+    typecheck = cellfun(@(c)any(TYPE==c(1:min(3,end))),progArgNames); 
+    if ~iscellstr(progArgNames)                                            ,throwAsCaller(MException('PROCESSARGS:notCellStr ',sprintf('PROGRAMMER ERROR - you must pass to processArgs name/default pairs'))); end
+    %% Remove * and + Markers
+    try
+    progArgNames(required | typecheck)  =    ...
+        cellfuncell(@(c)c(c~=REQ & c~=TYPE) ,...
+             progArgNames(required | typecheck));
+    catch ME
+       if strcmp(ME.identifier,'MATLAB:UndefinedFunction')
+                                                                           err = MException('PROCESSARGS:missingExternalFunctions','ProcessArgs requires the following external functions available in PMTK2: catString, cellfuncell, interweave, isprefix. Please add these to your MATLAB path.'); 
+           throw(addCause(err,ME));
+       else
+           rethrow(ME);
+       end
+    end
+    %% Set Default Values
+    defaults = varargin(2:2:end);
+    varargout = defaults;
+    %% Check Programmer Supplied Arguments
+    if mod(numel(varargin),2)                                              ,throwAsCaller(MException('PROCESSARGS:oddNumArgs',sprintf('PROGRAMMER ERROR - you have passed in an odd number of arguments to processArgs, which requires name/default pairs')));  end
+    if any(cellfun(@isempty,progArgNames))                                 ,throwAsCaller(MException('PROCESSARGS:emptyStrName ',sprintf('PROGRAMMER ERROR - empty-string names are not allowed')));end
+    if nargout ~= 1 && nargout ~= maxNargs                                 ,throwAsCaller(MException('PROCESSARGS:wrongNumOutputs',sprintf('PROGRAMMER ERROR - processArgs requires the same number of output arguments as named/default input pairs'))); end
+    if ~isempty(PREFIX)             && ...
+       ~all(cellfun(@(c)~isempty(c) &&...
+        c(1)==PREFIX,progArgNames)) 
+                                                                            throwAsCaller(MException('PROCESSARGS:missingPrefix',sprintf('PROGRAMMER ERROR - processArgs requires that each argument name begin with the prefix %s',PREFIX))); 
+    end
+    if FULL_ERROR_CHECK  && ...
+       numel(unique(progArgNames)) ~= numel(progArgNames)                  ,throwAsCaller(MException('PROCESSARGS:duplicateName',sprintf('PROGRAMMER ERROR - you can not use the same argument name twice')));end
+%% PROCESS USERARGS
+
+    %% Error Check User Args
+    if numel(userArgs) == 0 && nargout > 1
+        if any(required)                                                   ,throwAsCaller(MException('PROCESSARGS:missingReqArgs',sprintf('The following required arguments were not specified:\n%s',catString(progArgNames(required))))); 
+        else  return;
+        end
+    end
+    if FULL_ERROR_CHECK 
+     % slow, but helpful in transition from process_options to processArgs
+     % checks for missing '-' 
+        if ~isempty(PREFIX)
+            userstrings = lower(...
+                userArgs(cellfun(@(c)ischar(c) && size(c,1)==1,userArgs)));
+            problem = ismember(...
+                userstrings,cellfuncell(@(c)c(2:end),progArgNames));
+            if any(problem)
+                if sum(problem) == 1,                                       warning('processArgs:missingPrefix','The specified value ''%s'', matches an argument name, except for a missing prefix %s. It will be interpreted as a value, not a name.',userstrings{problem},PREFIX)
+                else                                                        warning('processArgs:missingPrefix','The following values match an argument name, except for missing prefixes %s:\n\n%s\n\nThey will be interpreted as values, not names.',PREFIX,catString(userstrings(problem)));
+                end
+            end
+        end
+    end
+    %% Find User Arg Names
+    userArgNamesNDX = find(cellfun(@(c)ischar(c)  &&...
+                                      ~isempty(c) &&...
+                                      c(1)==PREFIX,userArgs));
+    %% Check User Arg Names                                  
+    if ~isempty(userArgNamesNDX) && ...
+       ~isequal(userArgNamesNDX,userArgNamesNDX(1):2:numel(userArgs)-1)
+        if isempty(PREFIX),                                                 throwAsCaller(MException('PROCESSARGS:missingVal',sprintf('\n(1) every named argument must be followed by its value\n(2) no positional argument may be used after the first named argument\n')));
+        else                                                                throwAsCaller(MException('PROCESSARGS:posArgAfterNamedArg',sprintf('\n(1) every named argument must be followed by its value\n(2) no positional argument may be used after the first named argument\n(3) every argument name must begin with the ''%s'' character\n(4) values cannot be strings beginning with the %s character\n',PREFIX,PREFIX))); 
+        end
+    end
+     if FULL_ERROR_CHECK          && ...
+        ~isempty(userArgNamesNDX) && ...
+         numel(unique(userArgs(userArgNamesNDX))) ~= numel(userArgNamesNDX)
+                                                                            throwAsCaller(MException('PROCESSARGS:duplicateUserArg',sprintf('You have specified the same argument name twice')));
+     end
+    %% Extract Positional Args 
+    argsProvided = false(1,maxNargs);
+    if isempty(userArgNamesNDX)
+        positionalArgs = userArgs;
+    elseif userArgNamesNDX(1) == 1
+        positionalArgs = {};
+    else
+        positionalArgs = userArgs(1:userArgNamesNDX(1)-1); 
+    end
+    %% Check For Too Many Inputs
+    if numel(positionalArgs) + numel(userArgNamesNDX) > maxNargs           ,throwAsCaller(MException('PROCESSARGS:tooManyInputs',sprintf('You have specified %d too many arguments to the function',numel(positionalArgs)+numel(userArgNamesNDX)- maxNargs)));end
+    %% Process Positional Args
+    for i=1:numel(positionalArgs)
+    % don't overwrite default value if positional arg is 
+    % empty, i.e. '',{},[]    
+        if ~isempty(userArgs{i})  
+           argsProvided(i) = true;
+           if typecheck(i) && ~isa(userArgs{i},class(defaults{i}))         ,throwAsCaller(MException('PROCESSARGS:argWrongType',sprintf('Argument %d must be of type %s',i,class(defaults{i}))));  end
+           varargout{i} = userArgs{i};
+        end
+    end
+    %% Process Named Args
+    userArgNames = userArgs(userArgNamesNDX);
+    userProgMap = zeros(1,numel(userArgNames));
+    usedProgArgNames = false(1,numel(progArgNames));
+    for i=1:numel(userArgNames)
+       for j=1:numel(progArgNames)
+          if ~usedProgArgNames(j) && strcmpi(userArgNames{i},progArgNames{j})
+              userProgMap(i) = j;
+              usedProgArgNames(j) = true;
+              break;
+          end
+       end
+    end
+    %% Error Check User Args
+    if any(~userProgMap)                                                   ,throwAsCaller(MException('PROCESSARGS:invalidArgNames',sprintf('The following argument names are invalid: %s',catString(userArgNames(userProgMap == 0),' , ')))); end
+    if any(userProgMap  <= numel(positionalArgs))                          ,throwAsCaller(MException('PROCESSARGS:bothPosAndName' ,sprintf('You cannot specify an argument positionally, and by name in the same function call.')));end
+    %% Extract User Values
+    userValues = userArgs(userArgNamesNDX + 1);
+    %% Type Check User Args
+    if any(typecheck)
+       for i=1:numel(userArgNamesNDX)
+          if typecheck(userProgMap(i)) && ...
+             ~isa(userArgs{userArgNamesNDX(i)+1},...
+              class(defaults{userProgMap(i)}))
+                                                                            throwAsCaller(MException('PROCESSARGS:wrongType',sprintf('Argument %s must be of type %s',userArgs{userArgNamesNDX(i)},class(defaults{userProgMap(i)})))); 
+          end
+       end
+    end    
+    varargout(userProgMap) = userValues;
+    %% Check Required Args
+    argsProvided(userProgMap) = true;
+    if any(~argsProvided & required)                                       ,throwAsCaller(MException('PROCESSARGS:emptyVals',sprintf('The following required arguments were either not specified, or were given empty values:\n%s',catString(progArgNames(~argsProvided & required))))); end
+    %% Relay Mode
+    if nargout == 1 && (numel(varargin) > 2 || (numel(varargin) == 1 && isprefix('-',varargin{1})))
+        varargout = {interweave(progArgNames,varargout)};
+    end 
+    
+end
+
+
+function s = catString(c,delim)
+% Converts a cell array of strings to a single string, (i.e. single-row
+% character array). The specified delimiter, delim, is added between each
+% entry. Include any spaces you want in delim. If delim is not specified,
+% ', ' is used instead. If c is already a string, it is just returned. If c
+% is empty, s = ''. 
+%
+% EXAMPLE:
+%
+% s = catString({'touch /tmp/foo';'touch /tmp foo2';'mkdir /tmp/test'},' && ')
+% s =
+% touch /tmp/foo && touch /tmp foo2 && mkdir /tmp/test
+
+   if nargin == 0; s = ''; return; end
+   if ischar(c), s=c; 
+        if strcmp(s,','),s = '';end
+       return; 
+   end
+   if isempty(c),s=''; return;end
+   if nargin < 2, delim = ',  '; end
+   s = '';
+   for i=1:numel(c)
+      s = [s, rowvec(c{i}),rowvec(delim)]; %#ok
+   end
+    s(end-numel(delim)+1:end) = [];
+    if strcmp(s,','),s = '';end
+end
+    
+    
+function out = cellfuncell(fun, C, varargin)
+    out = cellfun(fun, C, varargin{:},'UniformOutput',false);
+end
+    
+function C = interweave(A,B)
+% If A, B are two cell arrays of length N1, N2, C is a cell array of length
+% N1 + N2 where where C(1) = A(1), C(2) = B(1), C(3) = A(2), C(4) = B(2), ... etc
+% Note, C is always a row vector. If one cell array is longer than the 
+% other the remaining elements of the longer cell array are added to the
+% end of C. A and B are first converted to column vectors. 
+    A = A(:); B = B(:);
+    C = cell(length(A)+length(B),1);
+    counter = 1;
+    while true
+       if ~isempty(A)
+          C(counter) = A(1); A(1) = [];
+          counter = counter + 1;
+       end
+       if ~isempty(B)
+           C(counter) = B(1); B(1) = [];
+           counter = counter + 1;
+       end
+       if isempty(A) && isempty(B)
+           break;
+       end
+    end
+    C = C';
+end    
+    
+function p = isprefix(short,long)
+% ISPREFIX Tests if the first arg is a prefix of the second. 
+% The second arg may also be a cell array of strings, in which case, each
+% is tested. CASE SENSITIVE!
+%
+% If the second argument is not a string, p = false, it does not error. 
+%
+% EXAMPLES:
+% 
+% isprefix('foo','foobar')
+% ans =
+%      1
+%
+%isprefix('test_',{'test_MvnDist','test_DiscreteDist','UnitTest'})
+%ans =
+%     1     1     0
+    error(nargchk(2,2,nargin));
+    if ischar(long)
+        p = strncmp(long,short,length(short));
+    elseif iscell(long)
+        p = cellfun(@(c)isprefix(short,c),long);
+    else
+        p  = false;
+    end
+end    
+    
+    
+function x = rowvec(x)
+    x = x(:)';
+end    
+    
+function x = colvec(x)
+    x = x(:);
+end
+
+
+
+
+
+
+
+
+
+
+