diff toolboxes/FullBNT-1.0.7/bnt/inference/static/@jtree_limid_inf_engine/jtree_limid_inf_engine.m @ 0:e9a9cd732c1e tip

first hg version after svn

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/toolboxes/FullBNT-1.0.7/bnt/inference/static/@jtree_limid_inf_engine/jtree_limid_inf_engine.m	Tue Feb 10 15:05:51 2015 +0000
@@ -0,0 +1,52 @@
+function engine = jtree_limid_inf_engine(bnet)
+% JTREE_LIMID_INF_ENGINE Make a junction tree engine for use by solve_limid
+% engine = jtree_limid_inf_engine(bnet)
+%
+% This engine is designed to compute marginals on decision nodes
+
+
+MG = moralize(bnet.dag);
+% We do not remove the utility nodes, because that complicates the book-keeping.
+% Leaving them in will not introduce any un-necessary triangulation arcs, because they are always leaves.
+% Also, since utility nodes have size 1, they do not increase the size of the potentials.
+
+ns = bnet.node_sizes;
+elim_order = best_first_elim_order(MG, ns);
+[MTG, engine.cliques]  = triangulate(MG, elim_order);
+[engine.jtree, root, B, w] = cliques_to_jtree(engine.cliques, ns);
+
+% A node can be a member of many cliques, but is assigned to exactly one, to avoid
+% double-counting its CPD. We assign node i to clique c if c is the "lightest" clique that
+% contains i's family, so it can accomodate its CPD.
+N = length(bnet.dag);
+engine.clq_ass_to_node = zeros(1, N);
+for i=1:N
+  clqs_containing_family = find(all(B(:,family(bnet.dag, i)), 2)); % all selected columns must be 1
+  c = clqs_containing_family(argmin(w(clqs_containing_family)));  
+  engine.clq_ass_to_node(i) = c; 
+end
+
+
+% Compute the separators between connected cliques.
+[is,js] = find(engine.jtree > 0);
+num_cliques = length(engine.cliques);
+engine.separator = cell(num_cliques, num_cliques);
+for k=1:length(is)
+  i = is(k); j = js(k);
+  engine.separator{i,j} = find(B(i,:) & B(j,:)); % intersect(cliques{i}, cliques{j});
+end
+
+
+% create |D| different rooted jtree's
+engine.rooted_jtree = cell(1, N);
+engine.preorder = cell(1, N);
+engine.postorder = cell(1, N);
+for d=bnet.decision_nodes(:)'
+  root = engine.clq_ass_to_node(d);
+  [engine.rooted_jtree{d}, engine.preorder{d}, engine.postorder{d}] = mk_rooted_tree(engine.jtree, root);
+end
+
+engine.exclude = [];
+engine.evidence = [];
+
+engine = class(engine, 'jtree_limid_inf_engine', inf_engine(bnet));