diff toolboxes/FullBNT-1.0.7/KPMtools/subv2indKPM.c @ 0:e9a9cd732c1e tip

first hg version after svn

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/toolboxes/FullBNT-1.0.7/KPMtools/subv2indKPM.c	Tue Feb 10 15:05:51 2015 +0000
@@ -0,0 +1,89 @@
+/* C mex version of subv2ind*/
+/* 2 inputs, 1 output       */
+/* siz, subv                */
+/* ndx                      */
+#include "mex.h"
+
+void mexFunction(int nlhs, mxArray *plhs[], int nrhs, const mxArray *prhs[]){
+	int    i, j, k, nCol, nRow, binary, temp;
+	double *pSize, *pSubv, *pr;
+	int    *cumprod;
+
+	pSize = mxGetPr(prhs[0]);
+	pSubv = mxGetPr(prhs[1]);
+	nCol  = mxGetNumberOfElements(prhs[0]);
+	nRow  = mxGetM(prhs[1]);
+
+	
+	if(mxIsEmpty(prhs[1])){
+		plhs[0] = mxCreateDoubleMatrix(0, 0, mxREAL);
+		return;
+	}
+
+	if(mxIsEmpty(prhs[0])){
+		plhs[0] = mxCreateDoubleMatrix(1, 1, mxREAL);
+		*mxGetPr(plhs[0]) = 1;
+		return;
+	}
+
+	binary = 2;
+	for (i = 0; i < nCol; i++){
+		if (pSize[i] > 2.0){
+			binary = 0;
+			break;
+		}
+		else if(pSize[i] == 1.0){
+			binary = 1;
+		}
+	}
+
+	plhs[0] = mxCreateDoubleMatrix(nRow, 1, mxREAL);
+	pr = mxGetPr(plhs[0]);
+	for(i=0; i<nRow; i++){
+		pr[i] = 1.0;
+	}
+
+	if (binary == 2){
+		for(j=0; j<nCol; j++){
+			temp = j * nRow;
+			for(i=0; i<nRow; i++){
+				pr[i] += ((int)pSubv[temp + i] - 1) << j;
+			}
+		}
+	}
+	else if(binary == 1){	
+		cumprod = malloc(nCol * sizeof(int));
+		cumprod[0] = 1;
+		for(i=1; i<nCol; i++){
+			k = (int)pSize[i-1] - 1;
+			cumprod[i] = cumprod[i-1] << k;
+		}
+		for(j=0; j<nCol; j++){
+			temp = j * nRow;
+			for(i=0; i<nRow; i++){
+				k = (int)pSubv[temp + i] - 1;
+				if(k)pr[i] += cumprod[j];
+			}
+		}
+		free(cumprod);
+	}
+	else {
+		cumprod = malloc(nCol * sizeof(int));
+		cumprod[0] = 1;
+		for(i=1; i<nCol; i++){
+			k = (int)pSize[i-1];
+			cumprod[i] = cumprod[i-1] * k;
+		}
+		for(j=0; j<nCol; j++){
+			temp = j * nRow;
+			for(i=0; i<nRow; i++){
+				k = (int)pSubv[temp + i] - 1;
+				pr[i] += cumprod[j] * k;
+			}
+		}
+		free(cumprod);
+	}
+}
+
+
+